Jatropha Genome Database
- JcCA0306451.20
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0306451.20 - phase: 0
(115 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9HIQ4_POPTR (tr|B9HIQ4) DNA-directed RNA polymerase subunit OS=... 160 5e-38
B9RZN6_RICCO (tr|B9RZN6) DNA-directed RNA polymerase subunit OS=... 157 5e-37
Q6NLH0_ARATH (tr|Q6NLH0) DNA-directed RNA polymerase subunit OS=... 154 2e-36
Q2HU21_MEDTR (tr|Q2HU21) DNA-directed RNA polymerase subunit OS=... 154 3e-36
D7L697_ARALY (tr|D7L697) Putative uncharacterized protein OS=Ara... 154 4e-36
Q8L5V0_ARATH (tr|Q8L5V0) DNA-directed RNA polymerase subunit OS=... 152 8e-36
D7M9X1_ARALY (tr|D7M9X1) Putative uncharacterized protein OS=Ara... 152 8e-36
C6SXF5_SOYBN (tr|C6SXF5) DNA-directed RNA polymerase subunit OS=... 151 3e-35
A5AGZ7_VITVI (tr|A5AGZ7) DNA-directed RNA polymerase subunit OS=... 150 3e-35
Q2QNM4_ORYSJ (tr|Q2QNM4) DNA-directed RNA polymerase subunit OS=... 148 2e-34
A2ZLM4_ORYSI (tr|A2ZLM4) DNA-directed RNA polymerase subunit OS=... 148 2e-34
Q0IMM9_ORYSJ (tr|Q0IMM9) Os12g0560400 protein (Fragment) OS=Oryz... 147 3e-34
B6T3H5_MAIZE (tr|B6T3H5) DNA-directed RNA polymerase subunit OS=... 146 7e-34
C5YC89_SORBI (tr|C5YC89) DNA-directed RNA polymerase subunit OS=... 145 1e-33
C5YZB6_SORBI (tr|C5YZB6) DNA-directed RNA polymerase subunit OS=... 145 1e-33
A9TUT9_PHYPA (tr|A9TUT9) DNA-directed RNA polymerase subunit OS=... 145 2e-33
B6TRW3_MAIZE (tr|B6TRW3) DNA-directed RNA polymerase subunit OS=... 142 8e-33
C5YPS4_SORBI (tr|C5YPS4) DNA-directed RNA polymerase subunit OS=... 142 1e-32
Q10T39_ORYSJ (tr|Q10T39) DNA-directed RNA polymerase subunit OS=... 137 4e-31
Q10T38_ORYSJ (tr|Q10T38) DNA-directed RNA polymerase subunit OS=... 134 3e-30
B8AL10_ORYSI (tr|B8AL10) DNA-directed RNA polymerase subunit OS=... 134 3e-30
C5Y7V5_SORBI (tr|C5Y7V5) Putative uncharacterized protein Sb05g0... 129 1e-28
B9HWY2_POPTR (tr|B9HWY2) DNA-directed RNA polymerase subunit OS=... 126 8e-28
Q8GSD5_ORYSJ (tr|Q8GSD5) Putative RNA Polymerase II subunit 14.5... 108 2e-22
B6UEU6_MAIZE (tr|B6UEU6) DNA-directed RNA polymerase II 14.5 kDa... 104 4e-21
D3YYI3_MOUSE (tr|D3YYI3) DNA-directed RNA polymerase subunit OS=... 103 8e-21
B6U7D6_MAIZE (tr|B6U7D6) DNA-directed RNA polymerase II 14.5 kDa... 102 1e-20
D4A531_RAT (tr|D4A531) DNA-directed RNA polymerase subunit OS=Ra... 102 1e-20
D2HFU4_AILME (tr|D2HFU4) DNA-directed RNA polymerase subunit (Fr... 102 1e-20
B5FX75_TAEGU (tr|B5FX75) DNA-directed RNA polymerase subunit OS=... 102 1e-20
C3XRA2_BRAFL (tr|C3XRA2) DNA-directed RNA polymerase subunit OS=... 101 2e-20
C5XE10_SORBI (tr|C5XE10) Putative uncharacterized protein Sb02g0... 99 1e-19
Q55GG8_DICDI (tr|Q55GG8) DNA-directed RNA polymerase subunit OS=... 99 1e-19
Q0D4N8_ORYSJ (tr|Q0D4N8) Os07g0615800 protein OS=Oryza sativa su... 99 1e-19
B7PRG9_IXOSC (tr|B7PRG9) DNA-directed RNA polymerase subunit OS=... 99 1e-19
B0W4J8_CULQU (tr|B0W4J8) DNA-directed RNA polymerase subunit OS=... 99 2e-19
B6U3L3_MAIZE (tr|B6U3L3) DNA-directed RNA polymerase II 14.5 kDa... 98 2e-19
Q1LVK2_DANRE (tr|Q1LVK2) DNA-directed RNA polymerase subunit OS=... 98 2e-19
Q5EAU6_XENLA (tr|Q5EAU6) DNA-directed RNA polymerase subunit OS=... 98 3e-19
Q4S925_TETNG (tr|Q4S925) DNA-directed RNA polymerase subunit (Fr... 97 4e-19
C1BGM4_ONCMY (tr|C1BGM4) DNA-directed RNA polymerase subunit OS=... 97 4e-19
B4KC63_DROMO (tr|B4KC63) DNA-directed RNA polymerase subunit OS=... 97 6e-19
C4WT20_ACYPI (tr|C4WT20) DNA-directed RNA polymerase subunit OS=... 97 7e-19
Q1HRD6_AEDAE (tr|Q1HRD6) DNA-directed RNA polymerase subunit OS=... 97 8e-19
B3LZX4_DROAN (tr|B3LZX4) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B7FNR6_DROME (tr|B7FNR6) DNA-directed RNA polymerase subunit (Fr... 96 1e-18
B4JS70_DROGR (tr|B4JS70) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4MBD3_DROVI (tr|B4MBD3) DNA-directed RNA polymerase subunit OS=... 96 1e-18
Q299B2_DROPS (tr|Q299B2) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4G4Z3_DROPE (tr|B4G4Z3) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4NAN1_DROWI (tr|B4NAN1) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4QZW6_DROSI (tr|B4QZW6) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4PT93_DROYA (tr|B4PT93) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B4HEP4_DROSE (tr|B4HEP4) DNA-directed RNA polymerase subunit OS=... 96 1e-18
B3P0P5_DROER (tr|B3P0P5) DNA-directed RNA polymerase subunit OS=... 96 1e-18
Q5XJ93_DANRE (tr|Q5XJ93) DNA-directed RNA polymerase subunit OS=... 96 1e-18
C1BH34_ONCMY (tr|C1BH34) DNA-directed RNA polymerase subunit OS=... 94 3e-18
D3BKZ5_POLPA (tr|D3BKZ5) RNA polymerase II core subunit OS=Polys... 94 4e-18
Q6QAQ8_PIG (tr|Q6QAQ8) DNA-directed RNA polymerase subunit (Frag... 94 5e-18
Q7Q4H0_ANOGA (tr|Q7Q4H0) DNA-directed RNA polymerase subunit (Fr... 94 5e-18
C1BNL8_9MAXI (tr|C1BNL8) DNA-directed RNA polymerase subunit OS=... 94 5e-18
D2A4H0_TRICA (tr|D2A4H0) DNA-directed RNA polymerase subunit OS=... 94 6e-18
A7SXH3_NEMVE (tr|A7SXH3) DNA-directed RNA polymerase subunit OS=... 93 9e-18
B4FHU6_MAIZE (tr|B4FHU6) Putative uncharacterized protein OS=Zea... 92 2e-17
D7M9S4_ARALY (tr|D7M9S4) Putative uncharacterized protein OS=Ara... 91 5e-17
A8QDP3_BRUMA (tr|A8QDP3) DNA-directed RNA polymerase subunit OS=... 89 1e-16
B3RJJ7_TRIAD (tr|B3RJJ7) DNA-directed RNA polymerase subunit OS=... 87 5e-16
Q965S0_CAEEL (tr|Q965S0) DNA-directed RNA polymerase subunit OS=... 84 5e-15
A4RSQ4_OSTLU (tr|A4RSQ4) DNA-directed RNA polymerase subunit OS=... 83 1e-14
C1LZL1_SCHMA (tr|C1LZL1) DNA-directed RNA polymerase subunit OS=... 80 6e-14
Q5DAX2_SCHJA (tr|Q5DAX2) DNA-directed RNA polymerase subunit OS=... 80 7e-14
C1FE61_9CHLO (tr|C1FE61) DNA-directed RNA polymerase subunit OS=... 80 8e-14
C7Z7Z8_NECH7 (tr|C7Z7Z8) DNA-directed RNA polymerase subunit OS=... 78 3e-13
C9SDJ5_VERA1 (tr|C9SDJ5) DNA-directed RNA polymerase subunit OS=... 77 6e-13
C1MJZ9_MICPS (tr|C1MJZ9) Predicted protein OS=Micromonas pusilla... 75 2e-12
A8XD45_CAEBR (tr|A8XD45) DNA-directed RNA polymerase subunit OS=... 74 4e-12
D3Z3Z8_MOUSE (tr|D3Z3Z8) Putative uncharacterized protein Polr2i... 74 6e-12
B6H263_PENCW (tr|B6H263) DNA-directed RNA polymerase subunit OS=... 70 9e-11
B6Q946_PENMQ (tr|B6Q946) DNA-directed RNA polymerase subunit OS=... 70 1e-10
C6H4I7_AJECH (tr|C6H4I7) DNA-directed RNA polymerase subunit OS=... 69 1e-10
C0NM38_AJECG (tr|C0NM38) DNA-directed RNA polymerase subunit OS=... 69 1e-10
Q4UDQ7_THEAN (tr|Q4UDQ7) DNA-directed RNA polymerase 2 subunit, ... 69 1e-10
Q4N5T6_THEPA (tr|Q4N5T6) DNA-directed RNA polymerase II subunit,... 69 1e-10
C5PHU6_COCP7 (tr|C5PHU6) DNA-directed RNA polymerase subunit OS=... 69 2e-10
B8NBS3_ASPFN (tr|B8NBS3) DNA-directed RNA polymerase subunit OS=... 68 3e-10
A2QZ75_ASPNC (tr|A2QZ75) Contig An12c0110, complete genome. OS=A... 68 3e-10
C1GD69_PARBD (tr|C1GD69) DNA-directed RNA polymerase subunit OS=... 67 7e-10
C0SHR0_PARBP (tr|C0SHR0) DNA-directed RNA polymerase subunit OS=... 67 7e-10
Q4X1W6_ASPFU (tr|Q4X1W6) DNA-directed RNA polymerase subunit OS=... 67 8e-10
D5GJJ3_9PEZI (tr|D5GJJ3) DNA-directed RNA polymerase subunit OS=... 66 1e-09
B6JXI0_SCHJY (tr|B6JXI0) DNA-directed RNA polymerase subunit OS=... 65 2e-09
B2WH54_PYRTR (tr|B2WH54) DNA-directed RNA polymerase subunit OS=... 64 5e-09
A7AUU3_BABBO (tr|A7AUU3) DNA-directed RNA polymerase subunit OS=... 63 9e-09
B6Q947_PENMQ (tr|B6Q947) DNA-directed RNA polymerase subunit OS=... 63 1e-08
B7FQG9_PHATR (tr|B7FQG9) Predicted protein OS=Phaeodactylum tric... 63 1e-08
A3LYD6_PICST (tr|A3LYD6) DNA-directed RNA polymerase subunit OS=... 61 4e-08
A4R9M8_MAGGR (tr|A4R9M8) DNA-directed RNA polymerase subunit OS=... 60 7e-08
A8IJY1_CHLRE (tr|A8IJY1) DNA-directed RNA polymerase subunit OS=... 60 8e-08
B9HWY4_POPTR (tr|B9HWY4) Predicted protein OS=Populus trichocarp... 60 8e-08
C5E010_ZYGRC (tr|C5E010) DNA-directed RNA polymerase subunit OS=... 60 1e-07
Q6BK95_DEBHA (tr|Q6BK95) DNA-directed RNA polymerase subunit OS=... 60 1e-07
Q59Z24_CANAL (tr|Q59Z24) DNA-directed RNA polymerase subunit OS=... 59 1e-07
B8BIJ1_ORYSI (tr|B8BIJ1) Putative uncharacterized protein OS=Ory... 59 2e-07
B9WC06_CANDC (tr|B9WC06) DNA-directed RNA polymerase subunit OS=... 59 2e-07
A5DAZ0_PICGU (tr|A5DAZ0) DNA-directed RNA polymerase subunit OS=... 59 2e-07
B0D4Y9_LACBS (tr|B0D4Y9) DNA-directed RNA polymerase subunit OS=... 59 3e-07
C4YCH6_CLAL4 (tr|C4YCH6) DNA-directed RNA polymerase subunit OS=... 58 3e-07
D6VU72_YEAST (tr|D6VU72) B12.6 OS=Saccharomyces cerevisiae S288c... 58 4e-07
C8Z8H7_YEAS8 (tr|C8Z8H7) DNA-directed RNA polymerase subunit OS=... 58 4e-07
C7GW42_YEAS2 (tr|C7GW42) DNA-directed RNA polymerase subunit OS=... 58 4e-07
B3LHD8_YEAS1 (tr|B3LHD8) DNA-directed RNA polymerase subunit OS=... 58 4e-07
A6ZUA7_YEAS7 (tr|A6ZUA7) DNA-directed RNA polymerase subunit OS=... 58 4e-07
Q6CS79_KLULA (tr|Q6CS79) DNA-directed RNA polymerase subunit OS=... 57 5e-07
C4QY79_PICPG (tr|C4QY79) DNA-directed RNA polymerase subunit OS=... 57 6e-07
A7TJ44_VANPO (tr|A7TJ44) DNA-directed RNA polymerase subunit OS=... 57 6e-07
A8NUD2_COPC7 (tr|A8NUD2) DNA-directed RNA polymerase subunit OS=... 57 8e-07
A5DYL7_LODEL (tr|A5DYL7) DNA-directed RNA polymerase subunit OS=... 56 1e-06
C5M7A5_CANTT (tr|C5M7A5) DNA-directed RNA polymerase subunit OS=... 56 1e-06
C5E2E3_LACTC (tr|C5E2E3) DNA-directed RNA polymerase subunit OS=... 56 1e-06
B8BUI2_THAPS (tr|B8BUI2) Predicted protein OS=Thalassiosira pseu... 56 2e-06
A8AAT2_IGNH4 (tr|A8AAT2) DNA-directed RNA polymerase, subunit M ... 54 7e-06
>B9HIQ4_POPTR (tr|B9HIQ4) DNA-directed RNA polymerase subunit OS=Populus
trichocarpa GN=POPTRDRAFT_820572 PE=3 SV=1
Length = 114
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/80 (91%), Positives = 77/80 (96%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE AD+NCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAV+C VCKH EAVFFQAT+RGE
Sbjct: 35 QEIADDNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVTCTVCKHPEAVFFQATSRGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCGHRWR+
Sbjct: 95 EGMTLFFVCCNPNCGHRWRD 114
>B9RZN6_RICCO (tr|B9RZN6) DNA-directed RNA polymerase subunit OS=Ricinus communis
GN=RCOM_1000040 PE=3 SV=1
Length = 266
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/80 (90%), Positives = 75/80 (93%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A++NCVYRNEVHHS AERTQVLQDVAADPTLPRTKAV CQVCKH EAVFFQATARGE
Sbjct: 187 QEIAESNCVYRNEVHHSAAERTQVLQDVAADPTLPRTKAVECQVCKHPEAVFFQATARGE 246
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP CGHRWR+
Sbjct: 247 EGMTLFFVCCNPICGHRWRD 266
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 45/55 (81%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA 90
QE AD+N VYRNE+HHSV+E TQ+LQDVA+DPTLPRTK+V C C H EAVF Q
Sbjct: 35 QEVADSNRVYRNEIHHSVSEHTQILQDVASDPTLPRTKSVRCSACGHGEAVFLQG 89
>Q6NLH0_ARATH (tr|Q6NLH0) DNA-directed RNA polymerase subunit OS=Arabidopsis
thaliana GN=At3g16980 PE=3 SV=1
Length = 114
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 75/80 (93%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADN+CVYRNEVHHSV+ERTQ+L DVA+DPTLPRTKAV C C+H+EAVFFQATARGE
Sbjct: 35 QEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKAVRCSKCQHREAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCGHRWRE
Sbjct: 95 EGMTLFFVCCNPNCGHRWRE 114
>Q2HU21_MEDTR (tr|Q2HU21) DNA-directed RNA polymerase subunit OS=Medicago
truncatula GN=MtrDRAFT_AC149491g5v2 PE=3 SV=1
Length = 114
Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/80 (90%), Positives = 74/80 (92%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QEAADN CVYRNE+HHSVAERTQVLQDVAADPTLPRTKAV C C H EAVFFQATARGE
Sbjct: 35 QEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCGHRWR+
Sbjct: 95 EGMTLFFVCCNPNCGHRWRD 114
>D7L697_ARALY (tr|D7L697) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_318462 PE=4 SV=1
Length = 114
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADN+CVYRNEVHHSV+ERTQ+L DVA+DPTLPRTKAV C C+H EAVFFQATARGE
Sbjct: 35 QEVADNSCVYRNEVHHSVSERTQILTDVASDPTLPRTKAVRCAKCQHSEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCGHRWRE
Sbjct: 95 EGMTLFFVCCNPNCGHRWRE 114
>Q8L5V0_ARATH (tr|Q8L5V0) DNA-directed RNA polymerase subunit OS=Arabidopsis
thaliana GN=At4g16265 PE=3 SV=1
Length = 114
Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QEAADNNCVYRNEVHHSV+E+TQ+L DVA+DPTLPRTKAV C C+H EAVFFQATARGE
Sbjct: 35 QEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNC HRWRE
Sbjct: 95 EGMTLFFVCCNPNCSHRWRE 114
>D7M9X1_ARALY (tr|D7M9X1) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_493259 PE=4 SV=1
Length = 114
Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 74/80 (92%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QEAADNNCVYRNEVHHSV+E+TQ+L DVA+DPTLPRTKAV C C+H EAVFFQATARGE
Sbjct: 35 QEAADNNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNC HRWRE
Sbjct: 95 EGMTLFFVCCNPNCSHRWRE 114
>C6SXF5_SOYBN (tr|C6SXF5) DNA-directed RNA polymerase subunit OS=Glycine max PE=3
SV=1
Length = 114
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 72/80 (90%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADN CVYRNE+HHSV ERTQVLQDVAADPTLPRTK+V C C H EAVFFQATARGE
Sbjct: 35 QEVADNFCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCSQCNHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCGHRWR+
Sbjct: 95 EGMTLFFVCCNPNCGHRWRD 114
>A5AGZ7_VITVI (tr|A5AGZ7) DNA-directed RNA polymerase subunit OS=Vitis vinifera
GN=VITISV_024186 PE=3 SV=1
Length = 114
Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/80 (85%), Positives = 73/80 (91%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A+NNCVYRNE+HHSV ERTQVLQDVAADPTLPRTK+V C C H EAVFFQATARGE
Sbjct: 35 QEVAENNCVYRNEIHHSVGERTQVLQDVAADPTLPRTKSVRCAQCNHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCG+RWR+
Sbjct: 95 EGMTLFFVCCNPNCGYRWRD 114
>Q2QNM4_ORYSJ (tr|Q2QNM4) DNA-directed RNA polymerase subunit OS=Oryza sativa
subsp. japonica GN=LOC_Os12g37370 PE=3 SV=1
Length = 114
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 70/80 (87%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTKAV C VC H EAVFFQATARGE
Sbjct: 35 QEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP+CGHRWRE
Sbjct: 95 EGMTLFFVCCNPSCGHRWRE 114
>A2ZLM4_ORYSI (tr|A2ZLM4) DNA-directed RNA polymerase subunit OS=Oryza sativa
subsp. indica GN=OsI_38722 PE=3 SV=1
Length = 114
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 70/80 (87%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTKAV C VC H EAVFFQATARGE
Sbjct: 35 QEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP+CGHRWRE
Sbjct: 95 EGMTLFFVCCNPSCGHRWRE 114
>Q0IMM9_ORYSJ (tr|Q0IMM9) Os12g0560400 protein (Fragment) OS=Oryza sativa subsp.
japonica GN=Os12g0560400 PE=4 SV=1
Length = 104
Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/80 (86%), Positives = 70/80 (87%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTKAV C VC H EAVFFQATARGE
Sbjct: 25 QEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKAVRCAVCGHGEAVFFQATARGE 84
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP+CGHRWRE
Sbjct: 85 EGMTLFFVCCNPSCGHRWRE 104
>B6T3H5_MAIZE (tr|B6T3H5) DNA-directed RNA polymerase subunit OS=Zea mays PE=3
SV=1
Length = 114
Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 71/80 (88%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE +DNNCVYRNEVHH+ ERTQVLQDVA+DPTLPRTK V C +C H EAVFFQA ARGE
Sbjct: 35 QEVSDNNCVYRNEVHHTAGERTQVLQDVASDPTLPRTKTVRCNLCGHGEAVFFQAAARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCC+P+CGHRWRE
Sbjct: 95 EGMTLFFVCCSPDCGHRWRE 114
>C5YC89_SORBI (tr|C5YC89) DNA-directed RNA polymerase subunit OS=Sorghum bicolor
GN=Sb06g001670 PE=3 SV=1
Length = 114
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 71/80 (88%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE +DNNCVYRNEVHH+ ERTQVLQDVA+DPTLPRTK V C C H EAVFFQATARGE
Sbjct: 35 QEVSDNNCVYRNEVHHTAGERTQVLQDVASDPTLPRTKTVRCNACGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCC+P+CG+RWRE
Sbjct: 95 EGMTLFFVCCSPDCGNRWRE 114
>C5YZB6_SORBI (tr|C5YZB6) DNA-directed RNA polymerase subunit OS=Sorghum bicolor
GN=Sb09g022760 PE=3 SV=1
Length = 114
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/80 (81%), Positives = 71/80 (88%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE +DNNCVYRNEVHH+ ERTQVLQDVA+DPTLPRTK V C C H EAVFFQATARGE
Sbjct: 35 QEVSDNNCVYRNEVHHTAGERTQVLQDVASDPTLPRTKTVRCSACGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCC+P+CG+RWRE
Sbjct: 95 EGMTLFFVCCSPDCGNRWRE 114
>A9TUT9_PHYPA (tr|A9TUT9) DNA-directed RNA polymerase subunit OS=Physcomitrella
patens subsp. patens GN=PHYPADRAFT_172071 PE=3 SV=1
Length = 114
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 71/80 (88%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRNEV HS ERTQVLQD+A+DPTLPRTK V C C+H EAVFFQATARGE
Sbjct: 35 QEVADNNCVYRNEVLHSADERTQVLQDIASDPTLPRTKNVRCANCQHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNPNCG+RWR+
Sbjct: 95 EGMTLFFVCCNPNCGYRWRD 114
>B6TRW3_MAIZE (tr|B6TRW3) DNA-directed RNA polymerase subunit OS=Zea mays PE=3
SV=1
Length = 114
Score = 142 bits (359), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 69/80 (86%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTK+V C C H EAVFFQATARGE
Sbjct: 35 QEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKSVRCSSCGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP+CG+RWRE
Sbjct: 95 EGMTLFFVCCNPSCGNRWRE 114
>C5YPS4_SORBI (tr|C5YPS4) DNA-directed RNA polymerase subunit OS=Sorghum bicolor
GN=Sb08g018130 PE=3 SV=1
Length = 114
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/80 (82%), Positives = 69/80 (86%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTK+V C C H EAVFFQATARGE
Sbjct: 35 QEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKSVRCASCGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCNP+CG+RWRE
Sbjct: 95 EGMTLFFVCCNPSCGNRWRE 114
>Q10T39_ORYSJ (tr|Q10T39) DNA-directed RNA polymerase subunit OS=Oryza sativa
subsp. japonica GN=LOC_Os03g01230 PE=3 SV=1
Length = 136
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 75/104 (72%), Gaps = 5/104 (4%)
Query: 17 EHNIYILASVLSFFFSNSL-----QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPR 71
EH ++ L + + +L QE +++ CVYRNEV H+ ERTQVLQDVA+DPTLPR
Sbjct: 33 EHQVHTLIISIRLWRRRNLKKQQQQEVSESKCVYRNEVAHAAGERTQVLQDVASDPTLPR 92
Query: 72 TKAVSCQVCKHQEAVFFQATARGEEGMTLFFVCCNPNCGHRWRE 115
TK V C C H EAVFFQATARGEEGMTLFFVCCN C HRWRE
Sbjct: 93 TKTVRCAACGHGEAVFFQATARGEEGMTLFFVCCNLTCAHRWRE 136
>Q10T38_ORYSJ (tr|Q10T38) DNA-directed RNA polymerase subunit OS=Oryza sativa
subsp. japonica GN=Os03g0102200 PE=3 SV=1
Length = 114
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 66/80 (82%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE +++ CVYRNEV H+ ERTQVLQDVA+DPTLPRTK V C C H EAVFFQATARGE
Sbjct: 35 QEVSESKCVYRNEVAHAAGERTQVLQDVASDPTLPRTKTVRCAACGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCN C HRWRE
Sbjct: 95 EGMTLFFVCCNLTCAHRWRE 114
>B8AL10_ORYSI (tr|B8AL10) DNA-directed RNA polymerase subunit OS=Oryza sativa
subsp. indica GN=OsI_09622 PE=3 SV=1
Length = 114
Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/80 (76%), Positives = 66/80 (82%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE +++ CVYRNEV H+ ERTQVLQDVA+DPTLPRTK V C C H EAVFFQATARGE
Sbjct: 35 QEVSESKCVYRNEVAHAAGERTQVLQDVASDPTLPRTKTVRCAACGHGEAVFFQATARGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMTLFFVCCN C HRWRE
Sbjct: 95 EGMTLFFVCCNLTCAHRWRE 114
>C5Y7V5_SORBI (tr|C5Y7V5) Putative uncharacterized protein Sb05g026420 OS=Sorghum
bicolor GN=Sb05g026420 PE=4 SV=1
Length = 109
Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVL-QDVAADPTLPRTKAVSCQVCKHQEAVFFQATARG 94
QE AD+NCVYRN V H E TQVL +DVA+DPTLPRTK+V C C H EAVFFQAT RG
Sbjct: 29 QEVADSNCVYRNVVDHDAGELTQVLSEDVASDPTLPRTKSVRCAACGHGEAVFFQATTRG 88
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
E+GM LFFVCCNP+CGHRWR+
Sbjct: 89 EDGMALFFVCCNPSCGHRWRD 109
>B9HWY2_POPTR (tr|B9HWY2) DNA-directed RNA polymerase subunit OS=Populus
trichocarpa GN=POPTRDRAFT_805257 PE=3 SV=1
Length = 113
Score = 126 bits (316), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A NN VYRNE++H AE TQVLQDVA+DP LPRTK+V C VC + EAVF QATA G+
Sbjct: 35 QEVAGNNRVYRNEIYHHAAEYTQVLQDVASDPALPRTKSVCCAVCGYGEAVFLQATA-GD 93
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
EGMT+F+VCCNPNCGHRWR+
Sbjct: 94 EGMTMFYVCCNPNCGHRWRD 113
>Q8GSD5_ORYSJ (tr|Q8GSD5) Putative RNA Polymerase II subunit 14.5 kD OS=Oryza
sativa subsp. japonica GN=P0616D06.132 PE=4 SV=1
Length = 116
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A + CVY+ + E +L+D A DPTLPRT+++ C C H EA FFQA +GE
Sbjct: 37 QEPATDTCVYKRVLRKPAGEPKDILKDAATDPTLPRTRSIKCYNCGHPEAAFFQAPTKGE 96
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
+G+TL+F+CCNP+CGHRWR+
Sbjct: 97 KGLTLYFICCNPSCGHRWRD 116
>B6UEU6_MAIZE (tr|B6UEU6) DNA-directed RNA polymerase II 14.5 kDa polypeptide
OS=Zea mays PE=4 SV=1
Length = 114
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
+E A + CVY+ + E VL+D A DP+LPRT++V C C H EA FFQA +GE
Sbjct: 35 EEIATDTCVYKRVIRKPGGEPKDVLKDAATDPSLPRTRSVRCYNCNHPEAAFFQAPTKGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
+ MTL+F+CCNP+CGHRWR+
Sbjct: 95 QAMTLYFICCNPSCGHRWRD 114
>D3YYI3_MOUSE (tr|D3YYI3) DNA-directed RNA polymerase subunit OS=Mus musculus
GN=Polr2i PE=3 SV=1
Length = 103
Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ CQ C H+EAVFFQ+ +A
Sbjct: 21 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSA 80
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E+ M L++VC P+CGHRW E
Sbjct: 81 RAEDAMRLYYVCTAPHCGHRWTE 103
>B6U7D6_MAIZE (tr|B6U7D6) DNA-directed RNA polymerase II 14.5 kDa polypeptide
OS=Zea mays PE=4 SV=1
Length = 114
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 55/80 (68%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
+E A + CVY+ + E VL+D A DP+LPRT++V C C H EA FFQA +GE
Sbjct: 35 EEIATDTCVYKRVIRKPGGEPKDVLKDAATDPSLPRTRSVRCYNCNHPEAAFFQAPTKGE 94
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
+ MTL+F+CCNP CGHRWR+
Sbjct: 95 QAMTLYFICCNPICGHRWRD 114
>D4A531_RAT (tr|D4A531) DNA-directed RNA polymerase subunit OS=Rattus
norvegicus GN=Polr2i PE=3 SV=1
Length = 125
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ CQ C H+EAVFFQ+ +A
Sbjct: 43 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSA 102
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E+ M L++VC P+CGHRW E
Sbjct: 103 RAEDAMRLYYVCTAPHCGHRWTE 125
>D2HFU4_AILME (tr|D2HFU4) DNA-directed RNA polymerase subunit (Fragment)
OS=Ailuropoda melanoleuca GN=PANDA_009792 PE=3 SV=1
Length = 125
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ CQ C H+EAVFFQ+ +A
Sbjct: 43 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSA 102
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E+ M L++VC P+CGHRW E
Sbjct: 103 RAEDAMRLYYVCTAPHCGHRWTE 125
>B5FX75_TAEGU (tr|B5FX75) DNA-directed RNA polymerase subunit OS=Taeniopygia
guttata PE=2 SV=1
Length = 125
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ CQ C H+EAVFFQ+ +A
Sbjct: 43 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSA 102
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E+ M L++VC P+CGHRW E
Sbjct: 103 RAEDAMRLYYVCTAPHCGHRWTE 125
>C3XRA2_BRAFL (tr|C3XRA2) DNA-directed RNA polymerase subunit OS=Branchiostoma
floridae GN=BRAFLDRAFT_278052 PE=3 SV=1
Length = 125
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DVA DPTLPRT+ C C H+EAVFFQ+ T
Sbjct: 43 DYQQVADNSCIYVNKIMHEVDELTQIVADVAQDPTLPRTEDHQCPKCGHREAVFFQSQTT 102
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC PNCGHRW E
Sbjct: 103 KAEDAMRLYYVCTAPNCGHRWTE 125
>C5XE10_SORBI (tr|C5XE10) Putative uncharacterized protein Sb02g039195 (Fragment)
OS=Sorghum bicolor GN=Sb02g039195 PE=4 SV=1
Length = 72
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%)
Query: 44 VYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGMTLFFV 103
VY+ + V E VL+D A DP+LPRT++V C C H EA FFQA GE+ MTL+F+
Sbjct: 1 VYKRVIRKPVGEPKDVLKDAATDPSLPRTRSVRCYNCNHPEAAFFQAPTSGEQAMTLYFI 60
Query: 104 CCNPNCGHRWRE 115
CCNP+CGHRWR+
Sbjct: 61 CCNPSCGHRWRD 72
>Q55GG8_DICDI (tr|Q55GG8) DNA-directed RNA polymerase subunit OS=Dictyostelium
discoideum GN=rpb9 PE=3 SV=1
Length = 112
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
+E A NNCVYRNE+ HSV E+TQ+ QD+A+DPTLPRTKA C C +EA FFQ+
Sbjct: 32 KEEATNNCVYRNEIRHSVMEKTQISQDIASDPTLPRTKAAKCPSCGGREAAFFQSMT-AA 90
Query: 96 EGMTLFFVCCNPNCGHRW 113
GMTLF+VC +CG RW
Sbjct: 91 NGMTLFYVC--ASCGERW 106
>Q0D4N8_ORYSJ (tr|Q0D4N8) Os07g0615800 protein OS=Oryza sativa subsp. japonica
GN=Os07g0615800 PE=4 SV=1
Length = 117
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A + CVY+ + E +L+D A DPTLPRT+++ C C H EA FFQA +GE
Sbjct: 37 QEPATDTCVYKRVLRKPAGEPKDILKDAATDPTLPRTRSIKCYNCGHPEAAFFQAPTKGE 96
Query: 96 EGMTLFFVCCNPNCGH 111
+G+TL+F+CCNP+CGH
Sbjct: 97 KGLTLYFICCNPSCGH 112
>B7PRG9_IXOSC (tr|B7PRG9) DNA-directed RNA polymerase subunit OS=Ixodes
scapularis GN=IscW_ISCW007621 PE=3 SV=1
Length = 129
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATA- 92
Q+ ADNNC+Y N++ H V E TQ++ DV DPTLPRT+ +C C H+EAVFFQA +
Sbjct: 47 DYQQVADNNCIYVNKITHEVDELTQIVSDVVHDPTLPRTEDHTCPKCSHREAVFFQAQSR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E+ M L++VC N NC HRW E
Sbjct: 107 RAEDEMRLYYVCTNTNCTHRWTE 129
>B0W4J8_CULQU (tr|B0W4J8) DNA-directed RNA polymerase subunit OS=Culex
quinquefasciatus GN=CpipJ_CPIJ001855 PE=3 SV=1
Length = 127
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 45 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEEHACPKCAHREAVFFQAQTR 104
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC NPNC HRW E
Sbjct: 105 RAEEEMRLYYVCTNPNCCHRWTE 127
>B6U3L3_MAIZE (tr|B6U3L3) DNA-directed RNA polymerase II 14.5 kDa polypeptide
OS=Zea mays PE=4 SV=1
Length = 118
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFF----QAT 91
+E A + CVY+ + E VL+D A DP+LPRT++V C C H EA FF QA
Sbjct: 35 EEIATDTCVYKRVIRKPGGEPKDVLKDAATDPSLPRTRSVRCYNCXHPEAAFFQVCTQAP 94
Query: 92 ARGEEGMTLFFVCCNPNCGHRWRE 115
+GE+ MTL+F+CCNP+CGHRWR+
Sbjct: 95 TKGEQAMTLYFICCNPSCGHRWRD 118
>Q1LVK2_DANRE (tr|Q1LVK2) DNA-directed RNA polymerase subunit OS=Danio rerio
GN=polr2i PE=2 SV=1
Length = 126
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DVA DPTLPRT+ C C H+EAVFFQ+ +
Sbjct: 44 DYQQEADNSCIYVNKITHEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSM 103
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC P+CGHRW E
Sbjct: 104 KAEDAMRLYYVCTAPHCGHRWTE 126
>Q5EAU6_XENLA (tr|Q5EAU6) DNA-directed RNA polymerase subunit OS=Xenopus laevis
GN=polr2i PE=2 SV=1
Length = 125
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H + E TQ++ DVA +PTLPRT+ C C H+EAVFFQ+ +A
Sbjct: 43 DYQQEADNSCIYVNKITHEIDELTQIIADVAQEPTLPRTEDHPCSKCGHKEAVFFQSHSA 102
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC P+CGHRW E
Sbjct: 103 KSEDAMRLYYVCTAPHCGHRWTE 125
>Q4S925_TETNG (tr|Q4S925) DNA-directed RNA polymerase subunit (Fragment)
OS=Tetraodon nigroviridis GN=GSTENG00022088001 PE=3 SV=1
Length = 126
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C C H+EAVFFQ+ +
Sbjct: 44 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCPKCGHKEAVFFQSHSM 103
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC P+CGHRW E
Sbjct: 104 KAEDAMRLYYVCTAPHCGHRWTE 126
>C1BGM4_ONCMY (tr|C1BGM4) DNA-directed RNA polymerase subunit OS=Oncorhynchus
mykiss GN=RPB9 PE=2 SV=1
Length = 126
Score = 97.4 bits (241), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C C H+EAVFFQ+ +
Sbjct: 44 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCPKCGHKEAVFFQSHSM 103
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC P+CGHRW E
Sbjct: 104 KAEDAMRLYYVCTAPHCGHRWTE 126
>B4KC63_DROMO (tr|B4KC63) DNA-directed RNA polymerase subunit OS=Drosophila
mojavensis GN=GI10814 PE=3 SV=1
Length = 103
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 21 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 80
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 81 RAEEEMRLYYVCTNQNCTHRWTE 103
>C4WT20_ACYPI (tr|C4WT20) DNA-directed RNA polymerase subunit OS=Acyrthosiphon
pisum GN=ACYPI001520 PE=2 SV=1
Length = 130
Score = 96.7 bits (239), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARG 94
++ AD+NC+Y N++ H + E T ++ DV +DPTLPR++ C CKH+E+VFFQA T R
Sbjct: 47 RQMADSNCIYVNKIMHEINELTHIVSDVTSDPTLPRSEDHPCPKCKHRESVFFQAQTRRA 106
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
EE M L++VC NP+C HRW E
Sbjct: 107 EEEMRLYYVCTNPHCIHRWTE 127
>Q1HRD6_AEDAE (tr|Q1HRD6) DNA-directed RNA polymerase subunit OS=Aedes aegypti
GN=AAEL001831 PE=2 SV=1
Length = 128
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 46 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEEHACPKCTHREAVFFQAQTR 105
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC NP C HRW E
Sbjct: 106 RAEEEMRLYYVCTNPGCCHRWTE 128
>B3LZX4_DROAN (tr|B3LZX4) DNA-directed RNA polymerase subunit OS=Drosophila
ananassae GN=GF16163 PE=3 SV=1
Length = 129
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B7FNR6_DROME (tr|B7FNR6) DNA-directed RNA polymerase subunit (Fragment)
OS=Drosophila melanogaster GN=RpII15-RA PE=2 SV=1
Length = 136
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 54 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 113
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 114 RAEEEMRLYYVCTNQNCTHRWTE 136
>B4JS70_DROGR (tr|B4JS70) DNA-directed RNA polymerase subunit OS=Drosophila
grimshawi GN=GH18685 PE=3 SV=1
Length = 129
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4MBD3_DROVI (tr|B4MBD3) DNA-directed RNA polymerase subunit OS=Drosophila
virilis GN=GJ14413 PE=3 SV=1
Length = 129
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>Q299B2_DROPS (tr|Q299B2) DNA-directed RNA polymerase subunit OS=Drosophila
pseudoobscura pseudoobscura GN=GA17176 PE=3 SV=1
Length = 129
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4G4Z3_DROPE (tr|B4G4Z3) DNA-directed RNA polymerase subunit OS=Drosophila
persimilis GN=GL23270 PE=3 SV=1
Length = 129
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4NAN1_DROWI (tr|B4NAN1) DNA-directed RNA polymerase subunit OS=Drosophila
willistoni GN=GK11344 PE=3 SV=1
Length = 129
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4QZW6_DROSI (tr|B4QZW6) DNA-directed RNA polymerase subunit OS=Drosophila
simulans GN=GD18953 PE=3 SV=1
Length = 129
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4PT93_DROYA (tr|B4PT93) DNA-directed RNA polymerase subunit OS=Drosophila
yakuba GN=GE24228 PE=3 SV=1
Length = 129
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B4HEP4_DROSE (tr|B4HEP4) DNA-directed RNA polymerase subunit OS=Drosophila
sechellia GN=GM24158 PE=3 SV=1
Length = 129
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>B3P0P5_DROER (tr|B3P0P5) DNA-directed RNA polymerase subunit OS=Drosophila
erecta GN=GG16847 PE=3 SV=1
Length = 129
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 47 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTR 106
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N NC HRW E
Sbjct: 107 RAEEEMRLYYVCTNQNCTHRWTE 129
>Q5XJ93_DANRE (tr|Q5XJ93) DNA-directed RNA polymerase subunit OS=Danio rerio
GN=polr2i PE=2 SV=1
Length = 126
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C++ N++ H V E TQ++ DVA DPTLPRT+ C C H+EAVFFQ+ +
Sbjct: 44 DYQQEADNSCIHVNKITHEVDELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSM 103
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
+ E+ M L++VC P+CGHRW E
Sbjct: 104 KAEDAMRLYYVCTAPHCGHRWTE 126
>C1BH34_ONCMY (tr|C1BH34) DNA-directed RNA polymerase subunit OS=Oncorhynchus
mykiss GN=RPB9 PE=2 SV=1
Length = 126
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ C C H++AVFFQ+ +
Sbjct: 44 DYQQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCPKCGHKKAVFFQSHSM 103
Query: 93 RGEEGMTLFFVCCNPNCGHRW 113
+ E+ M L++VC P+CGHRW
Sbjct: 104 KAEDAMRLYYVCTAPHCGHRW 124
>D3BKZ5_POLPA (tr|D3BKZ5) RNA polymerase II core subunit OS=Polysphondylium
pallidum PN500 GN=rpb9 PE=4 SV=1
Length = 110
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
QE A NNCVYRNE+ HS+ ERTQ+ D+A+DPTLPRTK C C +EA+FFQ+ +
Sbjct: 32 QEKASNNCVYRNEIKHSIEERTQISHDIASDPTLPRTKGSKCPACGGREAIFFQSMGQKS 91
Query: 96 EGMTLFFV 103
+ MTLFF+
Sbjct: 92 DKMTLFFI 99
>Q6QAQ8_PIG (tr|Q6QAQ8) DNA-directed RNA polymerase subunit (Fragment) OS=Sus
scrofa PE=2 SV=1
Length = 105
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 26 VLSFFFSNSLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEA 85
+LS + Q+ DN+C+Y N++ V E TQ++ DV+ DPTLPR + CQ H+EA
Sbjct: 15 LLSVSRNCDYQQEGDNSCIYVNKITPEVGELTQIIADVSQDPTLPRNEDHPCQKRGHKEA 74
Query: 86 VFFQA-TARGEEGMTLFFVCCNPNCGHRWRE 115
VFFQ+ +AR E+ M L++VC P+CGHRW E
Sbjct: 75 VFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 105
>Q7Q4H0_ANOGA (tr|Q7Q4H0) DNA-directed RNA polymerase subunit (Fragment)
OS=Anopheles gambiae GN=AGAP008393 PE=3 SV=2
Length = 128
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+NC+Y N++ H + E T ++ DV +DPTLPRT+ +C C H+EAVFFQA T
Sbjct: 46 DYKQEADSNCIYVNKIMHEIDELTHIVPDVISDPTLPRTEEHACPKCSHREAVFFQAQTR 105
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC N +C HRW E
Sbjct: 106 RAEEEMRLYYVCTNSSCCHRWTE 128
>C1BNL8_9MAXI (tr|C1BNL8) DNA-directed RNA polymerase subunit OS=Caligus
rogercresseyi GN=RPB9 PE=2 SV=1
Length = 127
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-G 94
++ ADNNC+Y N++ H V E T ++ DV DPTLPR++ C CKH+EAVFFQ+ +R
Sbjct: 47 KQLADNNCIYVNKIMHEVDEVTNIVSDVIGDPTLPRSEDHPCPKCKHKEAVFFQSESRKA 106
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
++ M L++VC P C HRW E
Sbjct: 107 DDEMRLYYVCTYPQCAHRWTE 127
>D2A4H0_TRICA (tr|D2A4H0) DNA-directed RNA polymerase subunit OS=Tribolium
castaneum GN=GLEAN_15369 PE=3 SV=1
Length = 130
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TA 92
++ AD+ C+Y N++ H + E T ++ DV +DPTLPRT+ C C H+EAVFFQA T
Sbjct: 48 DYKQHADSKCIYVNKIMHEIDELTHIVPDVISDPTLPRTEDHHCPECNHREAVFFQAQTR 107
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R EE M L++VC NP C HRW E
Sbjct: 108 RAEEEMRLYYVCTNPMCAHRWTE 130
>A7SXH3_NEMVE (tr|A7SXH3) DNA-directed RNA polymerase subunit OS=Nematostella
vectensis GN=v1g247948 PE=3 SV=1
Length = 129
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGE 95
Q+ ADN+C+Y N++ H V E TQ++ DV ADPTLPRT+ C C H+E+VFFQ+ +
Sbjct: 50 QQEADNSCIYVNKITHEVNELTQIVGDVIADPTLPRTEDHECPRCGHRESVFFQSQSSKA 109
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
+ M L++VC + +CGH+W E
Sbjct: 110 DQMVLYYVCTSVDCGHKWTE 129
>B4FHU6_MAIZE (tr|B4FHU6) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 155
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 44/56 (78%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQ 89
S QE ADNNCVYRN VHHS E TQVLQDVA DPTLPRTK+V C C H EAVFFQ
Sbjct: 85 SPQEVADNNCVYRNVVHHSAGEFTQVLQDVAGDPTLPRTKSVRCSSCGHGEAVFFQ 140
>D7M9S4_ARALY (tr|D7M9S4) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_915072 PE=4 SV=1
Length = 84
Score = 90.5 bits (223), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 52/87 (59%), Gaps = 28/87 (32%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQ------ 89
QEAADNNCVYRNEVHHS V C C+H EAVFFQ
Sbjct: 19 QEAADNNCVYRNEVHHST---------------------VLCTKCQHGEAVFFQVNHYLK 57
Query: 90 -ATARGEEGMTLFFVCCNPNCGHRWRE 115
ATA+GEEGMTLFFVC NPNC HRWRE
Sbjct: 58 EATAKGEEGMTLFFVCYNPNCSHRWRE 84
>A8QDP3_BRUMA (tr|A8QDP3) DNA-directed RNA polymerase subunit OS=Brugia malayi
GN=Bm1_52995 PE=3 SV=1
Length = 121
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATA-RG 94
++ ++N C+Y N++ H V E TQ++ DV DPTLP+T+ C +C+ +EAVFFQA + R
Sbjct: 41 KQLSENPCIYVNKLMHEVDELTQIVADVVHDPTLPKTEDHPCPMCRGREAVFFQAQSRRA 100
Query: 95 EEGMTLFFVCCNPNCGHRW 113
EE M L++VC NP C HRW
Sbjct: 101 EEEMRLYYVCMNPTCAHRW 119
>B3RJJ7_TRIAD (tr|B3RJJ7) DNA-directed RNA polymerase subunit OS=Trichoplax
adhaerens GN=TRIADDRAFT_19600 PE=3 SV=1
Length = 129
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 25 SVLSFFFSN-SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQ 83
VL + N A+N C+Y N++ H + E TQ++ DV ADPTLPRT+ +C C +
Sbjct: 37 KVLRYMCRNCEYSRIAENPCIYVNKITHEINELTQIIADVVADPTLPRTREHACPKCMER 96
Query: 84 EAVFFQA-TARGEEGMTLFFVCCNPNCGHRWRE 115
EAVFFQA + E+ M L++VC CGHRW E
Sbjct: 97 EAVFFQAQSTLAEDNMKLYYVCSVQGCGHRWTE 129
>Q965S0_CAEEL (tr|Q965S0) DNA-directed RNA polymerase subunit OS=Caenorhabditis
elegans GN=rpb-9 PE=2 SV=1
Length = 167
Score = 84.0 bits (206), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARG 94
+E A N C+Y N++ H + E TQ++ D+ DPTLP+T+ C VC +AVFFQA T +
Sbjct: 87 REVAANPCIYVNKLVHEIDELTQIVGDIIHDPTLPKTEEHQCPVCGKSKAVFFQAQTKKA 146
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
EE M L++VC + +C HRW E
Sbjct: 147 EEEMRLYYVCASQDCQHRWTE 167
>A4RSQ4_OSTLU (tr|A4RSQ4) DNA-directed RNA polymerase subunit OS=Ostreococcus
lucimarinus (strain CCE9901) GN=Rpb9 PE=3 SV=1
Length = 124
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 52/78 (66%), Gaps = 4/78 (5%)
Query: 38 AADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEG 97
AA NCV+R + HS +E T V+ DV DPTLPR+K V C +C +EAVFF T EG
Sbjct: 46 AATENCVHRRTIFHSASEITAVIHDVRTDPTLPRSKDVQCSLCDAREAVFFSQTT--TEG 103
Query: 98 MTLFFVCCNPNCGHRWRE 115
M+LFF C NCG++W++
Sbjct: 104 MSLFFQCI--NCGNKWKD 119
>C1LZL1_SCHMA (tr|C1LZL1) DNA-directed RNA polymerase subunit OS=Schistosoma
mansoni GN=Smp_067090 PE=3 SV=1
Length = 126
Score = 80.1 bits (196), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARGE 95
+ ADN CVY N++ V E ++ DV DPTLPRT+ C+ C QEAVFFQ+ T + E
Sbjct: 47 QEADNPCVYINKLEQEVDELALIVPDVVHDPTLPRTEDHICRRCGKQEAVFFQSQTLKAE 106
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
E M L++VC N C H+W E
Sbjct: 107 ENMRLYYVCTNVECLHKWTE 126
>Q5DAX2_SCHJA (tr|Q5DAX2) DNA-directed RNA polymerase subunit OS=Schistosoma
japonicum PE=2 SV=1
Length = 126
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARGE 95
+ ADN CVY N++ V E ++ DV DPTLPRT+ C+ C QEAVFFQ+ T + E
Sbjct: 47 QEADNPCVYINKLEQEVDELALIVPDVVHDPTLPRTEDHICRRCGKQEAVFFQSQTLKAE 106
Query: 96 EGMTLFFVCCNPNCGHRWRE 115
E M L++VC N C H+W E
Sbjct: 107 ENMRLYYVCTNVECLHKWTE 126
>C1FE61_9CHLO (tr|C1FE61) DNA-directed RNA polymerase subunit OS=Micromonas sp.
RCC299 GN=MICPUN_51672 PE=3 SV=1
Length = 124
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 39 ADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGM 98
A ++CVYR+ +HH+ AE T ++QDV +DPTLPR+ V C C H EAVFF T EGM
Sbjct: 47 AIDHCVYRHSIHHTSAETTTIIQDVRSDPTLPRSSEVHCPSCDHGEAVFFSLTT--SEGM 104
Query: 99 TLFFVCCNPNCGHRWRE 115
+LFF C C +W++
Sbjct: 105 SLFFQCV--ACAGKWKD 119
>C7Z7Z8_NECH7 (tr|C7Z7Z8) DNA-directed RNA polymerase subunit OS=Nectria
haematococca (strain 77-13-4 / FGSC 9596 / MPVI)
GN=NECHADRAFT_68831 PE=3 SV=1
Length = 131
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CV+RN ++ S E V QDV +DPTLPR+ +C CKH+EAVFFQ+ R E
Sbjct: 56 EDAQSTCVFRNVLNTSAGETAGVTQDVGSDPTLPRSNK-TCPSCKHEEAVFFQSQQRSAE 114
Query: 96 EGMTLFFVCCNPNCGH 111
GM LF+VCC CGH
Sbjct: 115 TGMKLFYVCC--ECGH 128
>C9SDJ5_VERA1 (tr|C9SDJ5) DNA-directed RNA polymerase subunit OS=Verticillium
albo-atrum (strain VaMs.102) GN=VDBG_02525 PE=3 SV=1
Length = 132
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A ++CV+RN ++++ E V QDV +DPTLPR + +SC C H EAVFFQ+ R E
Sbjct: 54 EEAQSSCVFRNVMNNAAGETAGVTQDVGSDPTLPR-EIISCPSCSHNEAVFFQSQQRSAE 112
Query: 96 EGMTLFFVCCNPNCGHRWR 114
GM LF+VCC CGH ++
Sbjct: 113 TGMKLFYVCC--ECGHIFQ 129
>C1MJZ9_MICPS (tr|C1MJZ9) Predicted protein OS=Micromonas pusilla CCMP1545
GN=MICPUCDRAFT_64136 PE=4 SV=1
Length = 154
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 35 LQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARG 94
Q AD++CV+R+ VHH+ AE T V+QDV DPTLPR+ V C C++ +AVFF T
Sbjct: 55 FQVEADDHCVFRHLVHHTAAETTTVIQDVRTDPTLPRSSHVRCSRCENADAVFFSLTT-- 112
Query: 95 EEGMTLFF 102
EGM+LFF
Sbjct: 113 SEGMSLFF 120
>A8XD45_CAEBR (tr|A8XD45) DNA-directed RNA polymerase subunit OS=Caenorhabditis
briggsae GN=cbr-rpb-9 PE=3 SV=1
Length = 144
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARG 94
+E A N C+Y N++ H + E TQ++ D+ DPTLP+T+ SC C ++AVFFQA T +
Sbjct: 66 REVAANPCIYVNKLVHEIDELTQIVADIIHDPTLPKTEEHSCPKCTKRKAVFFQAQTKKA 125
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
EE M L++VC C RW E
Sbjct: 126 EEEMRLYYVCM--YCQFRWTE 144
>D3Z3Z8_MOUSE (tr|D3Z3Z8) Putative uncharacterized protein Polr2i OS=Mus
musculus GN=Polr2i PE=4 SV=1
Length = 83
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARG 94
Q+ ADN+C+Y N++ H V E TQ++ DV+ DPTLPRT+ CQ C H+EAVFFQ+ +AR
Sbjct: 23 QQEADNSCIYVNKITHEVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARA 82
Query: 95 E 95
E
Sbjct: 83 E 83
>B6H263_PENCW (tr|B6H263) DNA-directed RNA polymerase subunit OS=Penicillium
chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin
54-1255) GN=Pc13g04110 PE=3 SV=1
Length = 128
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A ++CVY+N +H V + V QDV +DPTLPR + C C EAVFFQ+ R E
Sbjct: 53 EPASSHCVYQNHLHSQVGDTAGVTQDVTSDPTLPRANKL-CPSCGETEAVFFQSQQRSAE 111
Query: 96 EGMTLFFVCCNPNCGHRW 113
GM L++VCC CG +
Sbjct: 112 TGMKLYYVCC--ACGQVY 127
>B6Q946_PENMQ (tr|B6Q946) DNA-directed RNA polymerase subunit OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_070860 PE=3 SV=1
Length = 129
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 35 LQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR- 93
+ E A + CVY+N ++ V E V QDV +DPTLPR+ + C C EAVFFQ+ R
Sbjct: 52 VSEPATSPCVYQNNLNTQVGETAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRS 110
Query: 94 GEEGMTLFFVCCNPNCGH 111
E GM L++VCC CG+
Sbjct: 111 AETGMKLYYVCC--TCGN 126
>C6H4I7_AJECH (tr|C6H4I7) DNA-directed RNA polymerase subunit OS=Ajellomyces
capsulata (strain H143) GN=HCDG_01426 PE=3 SV=1
Length = 129
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CVY+N++++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 54 EPASSPCVYQNKLNNQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRSAE 112
Query: 96 EGMTLFFVCCNPNCGH 111
GM L++VCC CG+
Sbjct: 113 TGMKLYYVCC--TCGN 126
>C0NM38_AJECG (tr|C0NM38) DNA-directed RNA polymerase subunit OS=Ajellomyces
capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC
2432) GN=HCBG_04568 PE=3 SV=1
Length = 129
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CVY+N++++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 54 EPASSPCVYQNKLNNQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRSAE 112
Query: 96 EGMTLFFVCCNPNCGH 111
GM L++VCC CG+
Sbjct: 113 TGMKLYYVCC--TCGN 126
>Q4UDQ7_THEAN (tr|Q4UDQ7) DNA-directed RNA polymerase 2 subunit, putative
OS=Theileria annulata GN=TA11880 PE=4 SV=1
Length = 167
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 22 ILASVLSFF-----FSN-SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAV 75
IL L +F FS S +++++NC+YR + + + E V V DPTL RT
Sbjct: 20 ILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFVSPMVVKDPTLGRTTRW 79
Query: 76 SCQVCKHQEAVFFQATAR-GEEGMTLFFVCCNPNCGH 111
C C HQ+AVFFQ R ++ M L FVCCNP CG+
Sbjct: 80 RCLKCGHQKAVFFQLPERVTDDAMMLVFVCCNPGCGY 116
>Q4N5T6_THEPA (tr|Q4N5T6) DNA-directed RNA polymerase II subunit, putative
OS=Theileria parva GN=TP02_0205 PE=4 SV=1
Length = 167
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 22 ILASVLSFF-----FSN-SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAV 75
IL L +F FS S +++++NC+YR + + + E V V DPTL RT
Sbjct: 20 ILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFVSPMVVKDPTLGRTTRW 79
Query: 76 SCQVCKHQEAVFFQATAR-GEEGMTLFFVCCNPNCGH 111
C C HQ+AVFFQ R ++ M L FVCCNP CG+
Sbjct: 80 RCLKCGHQKAVFFQLPERVTDDAMMLVFVCCNPGCGY 116
>C5PHU6_COCP7 (tr|C5PHU6) DNA-directed RNA polymerase subunit OS=Coccidioides
posadasii (strain C735) GN=CPC735_054690 PE=3 SV=1
Length = 129
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A ++CVY+N+++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 54 EPATSHCVYQNKLNSQVGDTAGVTQDVGSDPTLPRSNRL-CPSCGENEAVFFQSQQRSAE 112
Query: 96 EGMTLFFVCC 105
GM L++VCC
Sbjct: 113 TGMKLYYVCC 122
>B8NBS3_ASPFN (tr|B8NBS3) DNA-directed RNA polymerase subunit OS=Aspergillus
flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 /
JCM 12722 / SRRC 167) GN=AFLA_046480 PE=3 SV=1
Length = 128
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CVY+N+++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 53 EPASSYCVYQNKLNSQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGEAEAVFFQSQQRSAE 111
Query: 96 EGMTLFFVCC 105
GM L++VCC
Sbjct: 112 TGMKLYYVCC 121
>A2QZ75_ASPNC (tr|A2QZ75) Contig An12c0110, complete genome. OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=An12g03900 PE=4 SV=1
Length = 119
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CVY+N+++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 44 EPATSYCVYQNKLNTQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGEAEAVFFQSQQRSAE 102
Query: 96 EGMTLFFVCC 105
GM L++VCC
Sbjct: 103 TGMKLYYVCC 112
>C1GD69_PARBD (tr|C1GD69) DNA-directed RNA polymerase subunit OS=Paracoccidioides
brasiliensis (strain Pb18) GN=PADG_05205 PE=3 SV=1
Length = 128
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CV++N+++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 53 EPATSPCVFQNKLNTQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRSAE 111
Query: 96 EGMTLFFVCCNPNCGH 111
GM L++VCC CG
Sbjct: 112 TGMKLYYVCC--TCGK 125
>C0SHR0_PARBP (tr|C0SHR0) DNA-directed RNA polymerase subunit OS=Paracoccidioides
brasiliensis (strain Pb03) GN=PABG_07240 PE=3 SV=1
Length = 128
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CV++N+++ V + V QDV +DPTLPR+ + C C EAVFFQ+ R E
Sbjct: 53 EPATSPCVFQNKLNTQVGDTAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRSAE 111
Query: 96 EGMTLFFVCCNPNCGH 111
GM L++VCC CG
Sbjct: 112 TGMKLYYVCC--TCGK 125
>Q4X1W6_ASPFU (tr|Q4X1W6) DNA-directed RNA polymerase subunit OS=Aspergillus
fumigatus GN=AFUA_2G08540 PE=3 SV=1
Length = 128
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GE 95
E A + CVY+N+++ V + V QDV +DPTLPR+ C C EAVFFQ+ R E
Sbjct: 53 EPATSYCVYQNKLNSQVGDTAGVTQDVGSDPTLPRSNK-PCPSCGEAEAVFFQSQQRSAE 111
Query: 96 EGMTLFFVCC 105
GM L++VCC
Sbjct: 112 TGMKLYYVCC 121
>D5GJJ3_9PEZI (tr|D5GJJ3) DNA-directed RNA polymerase subunit OS=Tuber
melanosporum GN=GSTUM_00009040001 PE=3 SV=1
Length = 126
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 15 LHEHNIYILASVLSFFFSNSLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKA 74
L+ H I +++ + E+A NNCV+RN + S E V DV +DPTLPR+
Sbjct: 30 LYPHEDRINNTLMYRCRTCQATESASNNCVFRNTLGGSTGETAGVTTDVGSDPTLPRSMK 89
Query: 75 VSCQVCKHQEAVFFQATARGEE-GMTLFFVCCNPNCG 110
C C E VFFQ+ R E+ M LF VCC +CG
Sbjct: 90 -PCPKCGENECVFFQSQQRTEDTKMRLFHVCC--SCG 123
>B6JXI0_SCHJY (tr|B6JXI0) DNA-directed RNA polymerase subunit
OS=Schizosaccharomyces japonicus (strain yFS275 /
FY16936) GN=SJAG_00119 PE=3 SV=1
Length = 112
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATA-RGE 95
E A + VYR+E+ +S E V QDVA+DPTLPRT+ C+ C E VFFQ+ + R +
Sbjct: 36 EVAAGSMVYRHELMNSTGETAGVTQDVASDPTLPRTEK-ECKRCHQSECVFFQSQSRRAD 94
Query: 96 EGMTLFFVC 104
MTLFFVC
Sbjct: 95 TKMTLFFVC 103
>B2WH54_PYRTR (tr|B2WH54) DNA-directed RNA polymerase subunit OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=PTRG_09313 PE=3
SV=1
Length = 137
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A ++CV R+E+ +V V +VA DPTLPR + C C EAVFFQ+ R
Sbjct: 49 SFTEEAPSSCVMRHEIASTVGATAGVTAEVAQDPTLPRIQK-QCTECGENEAVFFQSQQR 107
Query: 94 -GEEGMTLFFVCCNPNCGHRWR 114
E GM L+FVC CGH R
Sbjct: 108 TAETGMALYFVCA--GCGHVSR 127
>A7AUU3_BABBO (tr|A7AUU3) DNA-directed RNA polymerase subunit OS=Babesia bovis
GN=BBOV_II007540 PE=3 SV=1
Length = 163
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 41 NNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARG-EEGMT 99
+NC+ R ++ E + + DPTL RT+ C C H EA FFQ R ++ M
Sbjct: 45 DNCINRTTYNYQTREDIIIPPLITKDPTLGRTRQWDCPRCGHTEATFFQLPERAYDDAMV 104
Query: 100 LFFVCCNPNCG 110
L FVCCNP CG
Sbjct: 105 LVFVCCNPGCG 115
>B6Q947_PENMQ (tr|B6Q947) DNA-directed RNA polymerase subunit OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_070860 PE=3 SV=1
Length = 145
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 35 LQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARG 94
+ E A + CVY+N ++ V E V QDV +DPTLPR+ + C C EAVFFQ+ R
Sbjct: 52 VSEPATSPCVYQNNLNTQVGETAGVTQDVGSDPTLPRSNKL-CPSCGENEAVFFQSQQRS 110
Query: 95 EEGMTLFFVC 104
E + FVC
Sbjct: 111 AETGMVIFVC 120
>B7FQG9_PHATR (tr|B7FQG9) Predicted protein OS=Phaeodactylum tricornutum CCAP
1055/1 GN=PHATRDRAFT_24922 PE=4 SV=1
Length = 111
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 35 LQEAADNNCVYRNEVHHSVAERTQ-VLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
++ A D +YRNE V V ++ DPTL R++ +C C EAVFFQ+
Sbjct: 32 VESAPDQPLIYRNERKKEVGNILHTVPSSISDDPTLARSQKANCANCGRHEAVFFQSDVA 91
Query: 94 GEEGMTLFFVCCNPNCGHRW 113
+ + L FVCC NCGH+W
Sbjct: 92 QSDSLALIFVCC--NCGHKW 109
>A3LYD6_PICST (tr|A3LYD6) DNA-directed RNA polymerase subunit OS=Pichia stipitis
GN=RPB9 PE=3 SV=1
Length = 112
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ E V+QD+ +DPTLPR+ C C ++E VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELITNIGETAGVVQDIGSDPTLPRSDK-ECTKCGNKECVFFQSQQRRKD 94
Query: 97 -GMTLFFVCCN 106
M LF+VC N
Sbjct: 95 TSMILFYVCLN 105
>A4R9M8_MAGGR (tr|A4R9M8) DNA-directed RNA polymerase subunit OS=Magnaporthe
grisea GN=MGG_07391 PE=3 SV=1
Length = 131
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 39 ADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR-GEEG 97
A N CV+RNE++ S + +++ + DPTLPR K +CQ C E VFFQA R E G
Sbjct: 57 ASNTCVFRNELNSSASLHAGIIEGMGKDPTLPRAKK-TCQYCGFDEMVFFQAQQRTAETG 115
Query: 98 MTLFFVC 104
M +VC
Sbjct: 116 MKQIYVC 122
>A8IJY1_CHLRE (tr|A8IJY1) DNA-directed RNA polymerase subunit OS=Chlamydomonas
reinhardtii GN=RPB9 PE=3 SV=1
Length = 118
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 10/76 (13%)
Query: 43 CVYRNEVHHSVAE---RTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGMT 99
CVY VH +V + + L DV ADPTLPRT+ V C C H EAVF E+GMT
Sbjct: 48 CVY---VHATVVDEKDKITTLYDVTADPTLPRTRDVRCPKCNHNEAVFVSEPT--EQGMT 102
Query: 100 LFFVCCNPNCGHRWRE 115
L+F C C +WR+
Sbjct: 103 LYFHCV--ACREKWRD 116
>B9HWY4_POPTR (tr|B9HWY4) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_566800 PE=4 SV=1
Length = 69
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/40 (72%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
Query: 52 SVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQAT 91
++AE+TQVL VAADPTLPRTKA +C VCKH EAVFFQ +
Sbjct: 25 NLAEKTQVLH-VAADPTLPRTKAATCTVCKHPEAVFFQVS 63
>C5E010_ZYGRC (tr|C5E010) DNA-directed RNA polymerase subunit
OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732
/ IFO 1130 / NBRC 1623 / NCYC 568) GN=ZYRO0G08800g PE=3
SV=1
Length = 122
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A N VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGNPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVC 104
++ M LFFVC
Sbjct: 92 RKDTSMVLFFVC 103
>Q6BK95_DEBHA (tr|Q6BK95) DNA-directed RNA polymerase subunit OS=Debaryomyces
hansenii GN=DEHA2F23760g PE=3 SV=1
Length = 112
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ E V+QD+ +DPTLPR+ + C C ++++VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELITNIGETAGVVQDIGSDPTLPRS-SKECPDCGNKDSVFFQSQQRRKD 94
Query: 97 -GMTLFFVC 104
M LF+VC
Sbjct: 95 TSMILFYVC 103
>Q59Z24_CANAL (tr|Q59Z24) DNA-directed RNA polymerase subunit OS=Candida albicans
GN=RPB9 PE=3 SV=1
Length = 112
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ V++D+ DPTLPR+ C C H E VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELMTNIGATAGVVEDIGNDPTLPRSDK-ECPDCGHHECVFFQSQQRRKD 94
Query: 97 -GMTLFFVCCNPNCGHRWR 114
M LFFVC NC H ++
Sbjct: 95 TSMILFFVCL--NCKHVFQ 111
>B8BIJ1_ORYSI (tr|B8BIJ1) Putative uncharacterized protein OS=Oryza sativa subsp.
indica GN=OsI_37007 PE=4 SV=1
Length = 128
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 30/51 (58%)
Query: 57 TQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEEGMTLFFVCCNP 107
TQVLQDVA DPTLPRTK+V C C H EAVFFQ A C P
Sbjct: 31 TQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQEVAGSRATARTITWCTTP 81
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/33 (78%), Positives = 27/33 (81%)
Query: 57 TQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQ 89
TQVLQDVA DPTLPRTK+V C C H EAVFFQ
Sbjct: 86 TQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQ 118
>B9WC06_CANDC (tr|B9WC06) DNA-directed RNA polymerase subunit OS=Candida
dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL
Y-17841) GN=CD36_21470 PE=3 SV=1
Length = 112
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ V++D+ DPTLPR+ C C H E VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELITNIGATAGVVEDIGNDPTLPRSDK-ECPDCGHHECVFFQSQQRRKD 94
Query: 97 -GMTLFFVCCNPNCGHRWR 114
M LFFVC NC H ++
Sbjct: 95 TSMILFFVCL--NCKHVFQ 111
>A5DAZ0_PICGU (tr|A5DAZ0) DNA-directed RNA polymerase subunit OS=Pichia
guilliermondii GN=PGUG_00445 PE=3 SV=1
Length = 112
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ E V+QD+ DPTLPR+ C C +++ VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELMTNIGETAGVVQDIGNDPTLPRSDK-ECPRCSNKDCVFFQSQQRRKD 94
Query: 97 -GMTLFFVC 104
M LF+VC
Sbjct: 95 TSMILFYVC 103
>B0D4Y9_LACBS (tr|B0D4Y9) DNA-directed RNA polymerase subunit OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_184025 PE=3 SV=1
Length = 126
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 36 QEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQ-ATARG 94
E +N CVYRN++ E+ V D+ ADPTL + + C C H++AVF+Q + R
Sbjct: 35 DEIGENKCVYRNDLLTVTKEQVGVTTDLGADPTLAHSN-ILCPRCGHEDAVFYQDQSKRK 93
Query: 95 EEGMTLFFVCCNPNCGHRWRE 115
E M LFFVC C H + +
Sbjct: 94 ETRMLLFFVCV--KCNHSFTD 112
>C4YCH6_CLAL4 (tr|C4YCH6) DNA-directed RNA polymerase subunit OS=Clavispora
lusitaniae (strain ATCC 42720) GN=CLUG_05815 PE=3 SV=1
Length = 112
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQA-TARGE 95
E A+N VYR+E+ ++ E V+QD+ +DPTLPR+ + C C + + VFFQ+ R +
Sbjct: 36 ELAENPKVYRHELITNIGETAGVVQDIGSDPTLPRSNKI-CPHCGNHDCVFFQSQQKRKD 94
Query: 96 EGMTLFFVC 104
M LF+VC
Sbjct: 95 TSMILFYVC 103
>D6VU72_YEAST (tr|D6VU72) B12.6 OS=Saccharomyces cerevisiae S288c GN=RPB9 PE=4
SV=1
Length = 122
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A + VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>C8Z8H7_YEAS8 (tr|C8Z8H7) DNA-directed RNA polymerase subunit OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=EC1118_1G1_2201g PE=3 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A + VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>C7GW42_YEAS2 (tr|C7GW42) DNA-directed RNA polymerase subunit OS=Saccharomyces
cerevisiae (strain JAY291) GN=RPB9 PE=3 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A + VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>B3LHD8_YEAS1 (tr|B3LHD8) DNA-directed RNA polymerase subunit OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=SCRG_01071 PE=3 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A + VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>A6ZUA7_YEAS7 (tr|A6ZUA7) DNA-directed RNA polymerase subunit OS=Saccharomyces
cerevisiae (strain YJM789) GN=RPB9 PE=3 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A + VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R
Sbjct: 33 SYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHSRENVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>Q6CS79_KLULA (tr|Q6CS79) DNA-directed RNA polymerase subunit OS=Kluyveromyces
lactis GN=KLLA0D03234g PE=3 SV=1
Length = 122
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A VYR+E+ ++ E V+QD+ +DPTLPR+ C C +E VFFQ+ R ++
Sbjct: 36 EEAGTPLVYRHELKTNIGETAGVVQDIGSDPTLPRSDK-ECPKCHSRENVFFQSQQRRKD 94
Query: 97 -GMTLFFVC 104
M LF+VC
Sbjct: 95 TSMVLFYVC 103
>C4QY79_PICPG (tr|C4QY79) DNA-directed RNA polymerase subunit OS=Pichia pastoris
(strain GS115) GN=PAS_chr1-4_0359 PE=3 SV=1
Length = 113
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A++ VYR+E+ ++ E ++ D+ DPTLPR+ C C ++ VFFQ+ R ++
Sbjct: 34 ELAEDPKVYRHELITNIGETAGIVDDIGQDPTLPRSDK-ECPECHSRDCVFFQSQQRRKD 92
Query: 97 -GMTLFFVCCNPNCGHRWRE 115
MTLF+VC NC +R+
Sbjct: 93 TNMTLFYVCL--NCKKTFRD 110
>A7TJ44_VANPO (tr|A7TJ44) DNA-directed RNA polymerase subunit OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294)
GN=Kpol_1033p49 PE=3 SV=1
Length = 122
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATAR 93
S E A ++ VYR+E+ ++ E V+QD+ +DPTLPR+ C C ++ VFFQ+ R
Sbjct: 33 SYVEEAGSSLVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPKCHTRDNVFFQSQQR 91
Query: 94 GEE-GMTLFFVCCNPNCGH 111
++ M LFFVC +C H
Sbjct: 92 RKDTSMVLFFVCL--SCSH 108
>A8NUD2_COPC7 (tr|A8NUD2) DNA-directed RNA polymerase subunit OS=Coprinopsis
cinerea (strain Okayama-7 / 130 / FGSC 9003)
GN=CC1G_07076 PE=3 SV=2
Length = 123
Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 34 SLQEAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQ-ATA 92
S +E +N CVY++++ E+ V D+ +DPTL + + C C H +AVF+Q +
Sbjct: 33 SYEEVVENKCVYKDDLLTVTKEQVGVTTDLGSDPTLAHSN-IPCPKCGHDDAVFYQDQSK 91
Query: 93 RGEEGMTLFFVCCNPNCGHRWRE 115
R E M LF+VC C H +++
Sbjct: 92 RKETRMILFYVCV--KCNHTFQD 112
>A5DYL7_LODEL (tr|A5DYL7) DNA-directed RNA polymerase subunit OS=Lodderomyces
elongisporus GN=LELG_02454 PE=3 SV=1
Length = 112
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E AD++ VYR+E+ ++ V++D+ DPTLPR+ C C +++ VFFQ+ R ++
Sbjct: 36 EIADDSKVYRHELMTNIGATAGVVEDIGNDPTLPRSNK-ECPQCYNRDCVFFQSQQRRKD 94
Query: 97 -GMTLFFVC 104
M LFFVC
Sbjct: 95 TSMILFFVC 103
>C5M7A5_CANTT (tr|C5M7A5) DNA-directed RNA polymerase subunit OS=Candida
tropicalis (strain ATCC MYA-3404 / T1) GN=CTRG_01737
PE=3 SV=1
Length = 112
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATARGEE 96
E A+N VYR+E+ ++ V+QD+ DPTLPR+ C C + E VFFQ+ R ++
Sbjct: 36 ELAENPKVYRHELITNIGATAGVVQDIGNDPTLPRSNK-ECPECGNHECVFFQSQQRRKD 94
Query: 97 -GMTLFFVC 104
M LFFVC
Sbjct: 95 TSMILFFVC 103
>C5E2E3_LACTC (tr|C5E2E3) DNA-directed RNA polymerase subunit OS=Lachancea
thermotolerans (strain CBS 6340) GN=KLTH0H04224g PE=3
SV=1
Length = 122
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVFFQATA-RGE 95
E A VYR+E+ ++ E V+QD+ +DPTLPR+ C C E VFFQ+ R +
Sbjct: 36 EEAGTPMVYRHELITNIGETAGVVQDIGSDPTLPRSDR-ECPRCHSHENVFFQSQQRRSD 94
Query: 96 EGMTLFFVC 104
M LFFVC
Sbjct: 95 TSMVLFFVC 103
>B8BUI2_THAPS (tr|B8BUI2) Predicted protein OS=Thalassiosira pseudonana
GN=THAPSDRAFT_39536 PE=4 SV=1
Length = 112
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 37 EAADNNCVYRNEVHHSVAERTQVLQD-VAADPTLPRTKAVSCQVCKHQEAVFFQATARG- 94
E A +Y+N + V + V+ DPTLPR++ C C H EAVFFQ+
Sbjct: 33 EYAPGQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDV 92
Query: 95 -EEGMTLFFVCCNPNCGHRW 113
+ + L FVCC NC H+W
Sbjct: 93 RNDTLALIFVCC--NCDHKW 110
>A8AAT2_IGNH4 (tr|A8AAT2) DNA-directed RNA polymerase, subunit M OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=Igni_0852 PE=3 SV=1
Length = 113
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 47 NEVHHSVAERTQVLQDVAADPTLPRTKAVSCQVCKHQEAVF-FQATARGEEGMTLFFVCC 105
++ HSV E+T V+ + TLP+T+ V C C H EA + F T G+E T F+ C
Sbjct: 44 KKIRHSVKEKTVVIDNNIKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKC- 102
Query: 106 NPNCGHRWRE 115
CGH WRE
Sbjct: 103 -TRCGHVWRE 111