Jatropha Genome Database

JcCA0302891.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302891.20 + phase: 1 /TE/pseudo/partial
         (236 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5B326_VITVI (tr|A5B326) Putative uncharacterized protein OS=Vit...   139   3e-31
A5AVY5_VITVI (tr|A5AVY5) Putative uncharacterized protein OS=Vit...   134   7e-30
A5AJD0_VITVI (tr|A5AJD0) Putative uncharacterized protein OS=Vit...   130   8e-29
A5ATZ0_VITVI (tr|A5ATZ0) Putative uncharacterized protein OS=Vit...    92   3e-17
B9T4C3_RICCO (tr|B9T4C3) Putative uncharacterized protein OS=Ric...    69   5e-10
B9SNM0_RICCO (tr|B9SNM0) Putative uncharacterized protein OS=Ric...    68   9e-10
B9RLF3_RICCO (tr|B9RLF3) Putative uncharacterized protein OS=Ric...    67   2e-09
Q9C7H8_ARATH (tr|Q9C7H8) Gypsy/Ty3 element polyprotein, putative...    66   3e-09
B9SUW3_RICCO (tr|B9SUW3) Putative uncharacterized protein OS=Ric...    61   9e-08
B9R6V1_RICCO (tr|B9R6V1) Putative uncharacterized protein OS=Ric...    61   1e-07
A5C5K2_VITVI (tr|A5C5K2) Putative uncharacterized protein OS=Vit...    61   1e-07
Q9LHM4_ARATH (tr|Q9LHM4) Gypsy/Ty-3 retroelement polyprotein; 69...    61   1e-07
A5BEK1_VITVI (tr|A5BEK1) Putative uncharacterized protein OS=Vit...    60   2e-07
A5ADJ3_VITVI (tr|A5ADJ3) Putative uncharacterized protein OS=Vit...    59   6e-07
B9SQM0_RICCO (tr|B9SQM0) Putative uncharacterized protein OS=Ric...    55   6e-06

>A5B326_VITVI (tr|A5B326) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_011880 PE=4 SV=1
          Length = 1378

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/246 (35%), Positives = 116/246 (47%), Gaps = 40/246 (16%)

Query: 1   RVHPKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAE 60
           R  P+ +V++AAL  +GKA+QWH G++K +G   Y +W EYV  LNARF    FDDP+A+
Sbjct: 154 RTPPEARVRLAALHLEGKAIQWHQGYIKTRGNEAYLDWSEYVIALNARFGQHVFDDPIAD 213

Query: 61  LRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSGRXIADAHXDVXTXXXXXXXXXX 120
           LRNLRQ  SLQ Y+D F+ELYP+A I E+ ALSFFLSG                      
Sbjct: 214 LRNLRQTGSLQSYMDEFDELYPRADIKESHALSFFLSG-------------LIDELQMPV 260

Query: 121 XXXKFNCCCNPTEIKTXQISISLTILQPKSNVLXPKPKLSVTDPQNSNSEPTYHSLXXXX 180
              K     +   +   Q  I++  LQ K     PKP      P +  +   YH      
Sbjct: 261 RMFKPQTLADAYSLARLQ-EIAVAALQNK-----PKPVSKGPSPYSPTTN-HYHKATPIT 313

Query: 181 XXXXXXXXXWIVTNPKTNSSSRFP--------------------TLTSKEIDERRAKKQC 220
                       T PKT ++   P                      +++++DERRAK  C
Sbjct: 314 SISQYATNLSNTTFPKTTNAGLLPLPPSTNIPKTNPGITTRNHRNFSNRDLDERRAKGLC 373

Query: 221 FWCDEK 226
           FWCDEK
Sbjct: 374 FWCDEK 379


>A5AVY5_VITVI (tr|A5AVY5) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_042679 PE=4 SV=1
          Length = 1412

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/246 (35%), Positives = 117/246 (47%), Gaps = 40/246 (16%)

Query: 1   RVHPKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAE 60
           R  P+ +V++AAL  +GKA+QWH G++K +G   Y +W E V  LNARF    FDDP+A+
Sbjct: 102 RTPPEARVRLAALHLEGKAIQWHQGYIKTRGNEAYLDWSEXVIALNARFGQHVFDDPIAD 161

Query: 61  LRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSGRXIADAHXDVXTXXXXXXXXXX 120
           LRNLRQ  SLQ Y+D F+ELYP+A I E+ ALSFFLSG                      
Sbjct: 162 LRNLRQTGSLQSYMDEFDELYPRADIKESHALSFFLSG-------------LIDELXMPV 208

Query: 121 XXXKFNCCCNPTEIKTXQISISLTILQPKSNVLXPKPKLSVTDPQNSNSEPTYHSLXXXX 180
              K     +   +   Q  I++  LQ K     PKP +S      S +   YH      
Sbjct: 209 RMFKPQTLADAYSLARLQ-EIAVAALQNK-----PKP-VSKGPSLYSPTTNHYHXATPIT 261

Query: 181 XXXXXXXXXWIVTNPKTNSSSRFP--------------------TLTSKEIDERRAKKQC 220
                       T PKT ++   P                      +++++DERRAK  C
Sbjct: 262 SISQNATNLSNTTFPKTTNAGLLPLPPSTNIPKTNPGITTRNHRNFSNRDLDERRAKGLC 321

Query: 221 FWCDEK 226
           FWCDEK
Sbjct: 322 FWCDEK 327


>A5AJD0_VITVI (tr|A5AJD0) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_012031 PE=4 SV=1
          Length = 1371

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 89/246 (36%), Positives = 113/246 (45%), Gaps = 40/246 (16%)

Query: 1   RVHPKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAE 60
           R  P+ +V++AAL  +GKA+QWH G++K +G   Y +W EYV  LNARF    FBDP+A+
Sbjct: 102 RTPPEARVRLAALHLEGKAIQWHQGYIKTRGNEAYLDWSEYVIALNARFGQHVFBDPIAD 161

Query: 61  LRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSGRXIADAHXDVXTXXXXXXXXXX 120
           LRNLRQ  SLQ Y+D F+ELYP+A I E+ ALSFFLS                       
Sbjct: 162 LRNLRQTGSLQSYMDEFDELYPRADIKESHALSFFLS-------------XLIDELQMPV 208

Query: 121 XXXKFNCCCNPTEIKTXQISISLTILQPKSNVLXPKPKLSVTDPQNSNSEPTYHSLXXXX 180
              K     +   +   Q  I+   LQ K     PKP +S      S +   YH      
Sbjct: 209 RMFKPQTLADAYSLARLQ-EIAXAALQNK-----PKP-VSKGPSLYSPTTNHYHKATPIT 261

Query: 181 XXXXXXXXXWIVTNPKTNSSSRFPTLTSKEI--------------------DERRAKKQC 220
                       T PKT ++   P   S  I                    DERRAK  C
Sbjct: 262 SISQNATNLSNTTFPKTTNAGLLPLPPSTNIPKTNPGITTRNHXNFSNRDLDERRAKGLC 321

Query: 221 FWCDEK 226
           FWCDEK
Sbjct: 322 FWCDEK 327


>A5ATZ0_VITVI (tr|A5ATZ0) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_013041 PE=4 SV=1
          Length = 1357

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 61/98 (62%), Gaps = 23/98 (23%)

Query: 1   RVHPKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAE 60
           R  P+ +V++AAL  +GKA+QWH GF    G+ V                   FDDP+A+
Sbjct: 102 RTPPEARVRLAALHLEGKAIQWHSGF----GQHV-------------------FDDPIAD 138

Query: 61  LRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
           LRNLRQ  SLQ Y+D F+ELYP+A I E+ ALSFFLSG
Sbjct: 139 LRNLRQTGSLQSYMDEFDELYPRADIKESHALSFFLSG 176


>B9T4C3_RICCO (tr|B9T4C3) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0356800 PE=4 SV=1
          Length = 167

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           +VK+A +  +G+ +QWH  F+K +G      WEEYVK L +RF  +A++DP+ +L++L Q
Sbjct: 89  QVKLATIHMEGRTLQWHQSFIKNRGTTDEPPWEEYVKALKSRFREKAYEDPIVDLKSLAQ 148

Query: 67  NNSLQQYLDSFNEL 80
              LQ Y++ F+ L
Sbjct: 149 IGPLQDYMEEFDIL 162


>B9SNM0_RICCO (tr|B9SNM0) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1758780 PE=4 SV=1
          Length = 322

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 10/92 (10%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLRQ 66
           ++K+A++  +G+A+       KL GE     WEEYV  L  RF  +A++DP+A+L+ L Q
Sbjct: 163 RMKLASIHMEGRALN------KL-GE---PPWEEYVLALKGRFGEKAYEDPMADLKGLIQ 212

Query: 67  NNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
             +LQ+Y++SF  L  K  ++E+ +LS FLSG
Sbjct: 213 TGTLQEYMESFEVLSHKVTLSEDYSLSCFLSG 244


>B9RLF3_RICCO (tr|B9RLF3) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1466360 PE=4 SV=1
          Length = 188

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 53/78 (67%)

Query: 6   NKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           ++VK+A++  +G+A+QWH  F+K +GE     W++YV+ +  RF  +A++DP+A+L+ L 
Sbjct: 72  SQVKLASIHLEGRALQWHQTFIKNRGELGEPPWDDYVRAIKCRFGVRAYEDPMADLKMLV 131

Query: 66  QNNSLQQYLDSFNELYPK 83
           Q  S+  YL+ F+ L  K
Sbjct: 132 QIGSVSDYLEEFDVLSHK 149


>Q9C7H8_ARATH (tr|Q9C7H8) Gypsy/Ty3 element polyprotein, putative OS=Arabidopsis
           thaliana GN=T9I1.13 PE=4 SV=1
          Length = 1447

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLK-GEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           KVK+ A+  D  A  WH  F++   G  V+ NW EYVK L  RF   A DDP+AEL+ L+
Sbjct: 148 KVKMVAIHFDSHAATWHHSFIQSGIGLDVFFNWPEYVKLLKDRF-EDACDDPMAELKKLQ 206

Query: 66  QNNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
           + + + +Y   F  +  +  ++E   +S +L+G
Sbjct: 207 ETDGIVEYHQQFELIKVRLNLSEEYLVSVYLAG 239


>B9SUW3_RICCO (tr|B9SUW3) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0251410 PE=4 SV=1
          Length = 295

 Score = 61.2 bits (147), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query: 6   NKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNLR 65
           ++VK+A +  +G+A+QWH  F+K +GE     W +YV+ +  RF  + + DP+A+L+ L 
Sbjct: 144 SQVKLALIHLEGRALQWHQTFIKNRGELGEPPWNDYVRAIKCRFRVRTYKDPMADLKMLV 203

Query: 66  QNNSLQQYLDSFNELYPK 83
           Q  S+  YL+ F+ L  K
Sbjct: 204 QIGSVSDYLEEFDVLSHK 221


>B9R6V1_RICCO (tr|B9R6V1) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1585960 PE=4 SV=1
          Length = 181

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 43/60 (71%)

Query: 39 EEYVKFLNARFXNQAFDDPLAELRNLRQNNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
          +EY++ L  RF  + ++DP+A+L+ L Q  +LQ+YL++F+ L  K  + E+ +L+FFLSG
Sbjct: 10 DEYIEALKGRFGEKIYEDPMADLKGLMQTGTLQEYLEAFDSLSHKVTLPEDYSLNFFLSG 69


>A5C5K2_VITVI (tr|A5C5K2) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_039388 PE=4 SV=1
          Length = 1360

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 33/232 (14%)

Query: 2   VHPKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAEL 61
           + P  +V++A+   +G A+QWH    K +G      W+E+ K +  RF    ++DP   L
Sbjct: 111 ITPGQQVQLASFHLEGIALQWHRWLTKFRGP---LTWDEFTKAVQLRFGPTDYEDPSEAL 167

Query: 62  RNLRQNNSLQQYLDSFNELYPKA-GITENQALSFFLSGRXIADAHXDVXTXXXXXXXXXX 120
             L+Q  ++  Y ++F +L  +  G+ EN  +  F++G    +   DV            
Sbjct: 168 TRLKQTTTVAAYQEAFEKLSHRVDGLPENFLIGCFIAGL-QDEIRIDVKIKQPRTLADTI 226

Query: 121 XXXKFNCCCNPTEIK-TXQISISLTILQPKSNVLXPKPKLSVTDPQNSNSEPTYHSLXXX 179
              +     N  + K T Q       + PK++   P P   V  P      PT H     
Sbjct: 227 GVARLIEERNQLQRKPTQQTRFQPASVTPKAS---PNPTAGVLGP-----PPTQH----- 273

Query: 180 XXXXXXXXXXWIVTNPKTNSS-SRFPTLTSKEIDERRAKKQCFWCDEKNLRG 230
                         N  +N+  + F  +T++E  ERR K  C++CDEK + G
Sbjct: 274 -------------MNQSSNAQPATFHRITNQEARERREKGLCYYCDEKFVAG 312


>Q9LHM4_ARATH (tr|Q9LHM4) Gypsy/Ty-3 retroelement polyprotein; 69905-74404
           OS=Arabidopsis thaliana GN=T21B14.24 PE=4 SV=1
          Length = 1499

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)

Query: 7   KVKIAALQSDGKAMQWHXGFLKLKGEG--VYTNWEEYVKFLNARFXNQAFDDPLAELRNL 64
           KVK+AA+  D  A  WH  F++  G G  V  +W+ YVK L  RF +   DDP+AEL++L
Sbjct: 143 KVKMAAIHFDSHASTWHQSFIQ-SGVGLEVLYDWKGYVKLLKERFEDDC-DDPMAELKHL 200

Query: 65  RQNNSLQQYLDSFNELYPKAGITENQALSFFLSG 98
           ++ + +  Y   F  +  +  ++E   +S +L+G
Sbjct: 201 QETDGIIDYHQKFELIKTRVNLSEEYLVSVYLAG 234


>A5BEK1_VITVI (tr|A5BEK1) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_026680 PE=4 SV=1
          Length = 1469

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 4   PKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRN 63
           P ++V +A+   +GKA+ W   F  ++  G  ++WE +V+ L  RF +  ++DP+  L  
Sbjct: 119 PHHRVLLASFHMEGKALVW---FQDIEAAGGISSWEGFVRALQTRFGSSPYEDPMEALIR 175

Query: 64  LRQNNSLQQYLDSFNELYPKA-GITENQALSFFLSG 98
           L+Q ++++ Y   F  L  +  G+ E+  LS FLSG
Sbjct: 176 LKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSG 211


>A5ADJ3_VITVI (tr|A5ADJ3) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_017554 PE=4 SV=1
          Length = 2822

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 4/96 (4%)

Query: 4   PKNKVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRN 63
           P ++V +A+   +GKA+ W   F  ++  G  ++WE +V+ L  RF +  +++P+  L  
Sbjct: 84  PHHRVLLASFHMEGKALVW---FQDIEAAGGISSWEGFVRALQTRFGSSPYENPMEALIR 140

Query: 64  LRQNNSLQQYLDSFNELYPKA-GITENQALSFFLSG 98
           L+Q ++++ Y   F  L  +  G+ E+  LS FLSG
Sbjct: 141 LKQTSTVEDYKSQFEALSNQLRGLAESYKLSCFLSG 176


>B9SQM0_RICCO (tr|B9SQM0) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0456620 PE=4 SV=1
          Length = 247

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%)

Query: 7  KVKIAALQSDGKAMQWHXGFLKLKGEGVYTNWEEYVKFLNARFXNQAFDDPLAELRNL 64
          KVK+AA+  +G+A+QWH  F+K + +     W EYV+ L  RF  + ++DP+A+L++L
Sbjct: 39 KVKLAAIHMEGRALQWHKSFIKNRNKLEEPPWVEYVEALKGRFGEKVYEDPMADLKSL 96