Jatropha Genome Database

JcCA0302891.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302891.10 - phase: 0 /partial
         (93 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RW66_RICCO (tr|B9RW66) Putative uncharacterized protein OS=Ric...    67   4e-10

>B9RW66_RICCO (tr|B9RW66) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1176330 PE=4 SV=1
          Length = 310

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 23 KPSTLLIPGIATAIAVHRYKDVIVDGCTKALEARKRLSASP---FVAHSSAFPELSMSMS 79
          KP++L+ P +  A+A HRYK VIVDGCTK L  +   S S    F ++S   P LS+S +
Sbjct: 20 KPTSLISPAVVAALAAHRYKGVIVDGCTKILACKPSSSNSSTVGFESNSPFLPRLSLSRT 79

Query: 80 SQGSNQLLHVCSSK 93
          SQG NQ LH  SSK
Sbjct: 80 SQGYNQPLHASSSK 93