Jatropha Genome Database

JcCA0302361.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0302361.20 + phase: 0 
         (232 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RF41_RICCO (tr|B9RF41) Putative uncharacterized protein OS=Ric...   155   2e-36
Q84KA4_CUCME (tr|Q84KA4) Ctp OS=Cucumis melo GN=Ctp PE=4 SV=1          71   1e-10

>B9RF41_RICCO (tr|B9RF41) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1431200 PE=4 SV=1
          Length = 236

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/226 (44%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 1   MPMPFDFKFQPPLPKYSPLLNAIGKIIVSYHQ----RVDXXXXXXXXXXXXXXXHQTQIW 56
           MP  F FK QP + K    LN I KII++Y Q                      H+T I 
Sbjct: 1   MPTTFHFKSQPFISKGLLGLNPIEKIIITYPQCNSFSFSSKSPLFYSWPLVSLSHKTHIP 60

Query: 57  NPIVCASKKRRGSGSQKLSKIVPKLVYIAASNLKILPEPFNLVIAEXXXXXXXXXXXXXX 116
            P++CA KKRRGSG QKL KI+PKL  IAASNLKILPEPFNLVIAE              
Sbjct: 61  KPVLCARKKRRGSGFQKLKKILPKLASIAASNLKILPEPFNLVIAEFSGGGGGGDGGGGS 120

Query: 117 XXXXNSDGWRR-RKNTNXXXXXXXXXXXXXXXXXXREQLKCEVFLCGVLASGLLVTVLIK 175
                 DGWRR RKN N                  ++ LK + F  GVLA G  +T+LIK
Sbjct: 121 WFWRGFDGWRRKRKNINFWFLGFLIVCGLGKVLLGKD-LKKDAFY-GVLALGSSLTILIK 178

Query: 176 GNKKRLKNWVLGICLVGALMGLRLRRKEMQQWLHRLSVCLPALELV 221
           G +K +K  VL +C VGALMGLRL+R++MQQW+ ++  C PA +L 
Sbjct: 179 GFRKAVKYLVLELCFVGALMGLRLKRQDMQQWVQKVRDCTPAFQLA 224


>Q84KA4_CUCME (tr|Q84KA4) Ctp OS=Cucumis melo GN=Ctp PE=4 SV=1
          Length = 225

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 10/178 (5%)

Query: 60  VCASKKRRGSGSQKLSKIVPKLVYIAASNLKILPEPFNLVIAEXXXXXXXXXXXXX--XX 117
           +CA KK+R  G Q+ +K+V +L  + ASN+KILP P +LV+AE                 
Sbjct: 53  ICARKKKRSPGFQRSTKLVLELASLLASNIKILPPPLDLVVAELSGGDGNGGGSRLWRGF 112

Query: 118 XXXNSDGWR-RRKNTNXXXXXXXXXXXXXXXXXXREQLKCEVFLCGVLASGLLVTVLIKG 176
              + DGWR +RK T                    E  +    +CG+L   +    LI+ 
Sbjct: 113 GEGDYDGWRGKRKKTPLFIGFLMVCGLVLLFVTDFEINE----VCGILGFAVFSVALIQL 168

Query: 177 NKK--RLKNWVLGICLVGALMGLRLRRKEMQQWLHRLSVCLPALELVKGKGRNGRRVL 232
            +K    K++VLG  L G L+ L LRR E+Q+W+ +L    P ++ ++ K + GRR+ 
Sbjct: 169 WQKIGISKHFVLGFGLFGILIALGLRRSEVQKWVRKLGFYSPKMKSLRRKLK-GRRIF 225