Jatropha Genome Database

JcCA0297911.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0297911.10 - phase: 0 
         (100 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S129_RICCO (tr|B9S129) 60S ribosomal protein L18a, putative OS...   104   2e-21
A5AX92_VITVI (tr|A5AX92) Putative uncharacterized protein OS=Vit...    75   3e-12
B9SVW7_RICCO (tr|B9SVW7) 60S ribosomal protein L18a, plant, puta...    68   4e-10
A5AGA5_VITVI (tr|A5AGA5) Putative uncharacterized protein OS=Vit...    65   3e-09
D7SX30_VITVI (tr|D7SX30) Whole genome shotgun sequence of line P...    65   4e-09
A9PFR6_POPTR (tr|A9PFR6) Predicted protein OS=Populus trichocarp...    64   7e-09
Q9SHG7_ARATH (tr|Q9SHG7) At1g17080/F6I1.24 OS=Arabidopsis thalia...    63   1e-08
D7KEP1_ARALY (tr|D7KEP1) 60S ribosomal protein L18A-1 OS=Arabido...    58   3e-07
A8MRF3_ARATH (tr|A8MRF3) Uncharacterized protein At1g29970.2 OS=...    57   5e-07
Q0WNX5_ARATH (tr|Q0WNX5) 60S ribosomal protein L18A like OS=Arab...    57   7e-07
A7Y7F4_LUPAL (tr|A7Y7F4) Putative uncharacterized protein OS=Lup...    57   8e-07
B8LRJ9_PICSI (tr|B8LRJ9) Putative uncharacterized protein OS=Pic...    56   1e-06
A9NSW1_PICSI (tr|A9NSW1) Putative uncharacterized protein OS=Pic...    55   3e-06

>B9S129_RICCO (tr|B9S129) 60S ribosomal protein L18a, putative OS=Ricinus
           communis GN=RCOM_0632990 PE=4 SV=1
          Length = 303

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 65/100 (65%), Gaps = 8/100 (8%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M++EGKNRGV  TGNPQ +YYGTFQGVANYY                     + PHGS  
Sbjct: 1   MSDEGKNRGV--TGNPQGEYYGTFQGVANYYPSVPPPSLHPIVGFPQP----VPPHGSNP 54

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           NP Y+ H  N+  TGYAVIE RP+ EHRLPCCGLGMGWFL
Sbjct: 55  NPYYYVH--NTIPTGYAVIEARPLIEHRLPCCGLGMGWFL 92


>A5AX92_VITVI (tr|A5AX92) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_011978 PE=4 SV=1
          Length = 145

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/100 (45%), Positives = 56/100 (56%), Gaps = 12/100 (12%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M+EEGK+RG++   + Q  Y GTFQGVANY                      I     + 
Sbjct: 1   MSEEGKSRGLSGQQSNQIPY-GTFQGVANY----------PPLPPAHHPQPVIGIPQPVP 49

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
            P Y+ HGY +   GYAV+EGRPVRE RLPCCG+G+GW L
Sbjct: 50  PPGYYSHGYQT-VPGYAVVEGRPVRERRLPCCGIGIGWLL 88


>B9SVW7_RICCO (tr|B9SVW7) 60S ribosomal protein L18a, plant, putative OS=Ricinus
           communis GN=RCOM_0747380 PE=4 SV=1
          Length = 166

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 8/80 (10%)

Query: 21  YGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIANPQYFPHGYNSFATGYAVIE 80
           YGTFQGVANY                      + P G+ + P  +PHGY +   GYAV E
Sbjct: 38  YGTFQGVANY------PPPHPPQHPVIGFPQPVPPPGA-SEPPAYPHGYQT-VPGYAVAE 89

Query: 81  GRPVREHRLPCCGLGMGWFL 100
           GRPVRE RLPCCG+G+GWFL
Sbjct: 90  GRPVRERRLPCCGIGVGWFL 109


>A5AGA5_VITVI (tr|A5AGA5) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_044171 PE=4 SV=1
          Length = 141

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M+EE KNR          Q+YGTFQGV  Y                              
Sbjct: 1   MSEESKNRS--------DQHYGTFQGVPTY----SQPPAVGFPQPVPPPGAAEPSAPPPP 48

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
            PQY+ HGY +   GYAV EG PVRE RLPCCG+G+GWFL
Sbjct: 49  PPQYYAHGYQA-VPGYAVAEGTPVRERRLPCCGIGLGWFL 87


>D7SX30_VITVI (tr|D7SX30) Whole genome shotgun sequence of line PN40024,
           scaffold_135.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00000482001 PE=4 SV=1
          Length = 143

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIA 60
           M+EE KNR          Q+YGTFQGV  Y                              
Sbjct: 1   MSEESKNR--------SDQHYGTFQGVPTY----SQPPAVGFPQPVPPPGAAEPSAPPPP 48

Query: 61  NPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
            PQY+ HGY +   GYAV EG PVRE RLPCCG+G+GWFL
Sbjct: 49  PPQYYAHGYQA-VPGYAVAEGTPVRERRLPCCGIGLGWFL 87


>A9PFR6_POPTR (tr|A9PFR6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_815816 PE=2 SV=1
          Length = 156

 Score = 63.5 bits (153), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 52/110 (47%), Gaps = 21/110 (19%)

Query: 1   MTEEGKNRGVNVTGNPQTQY----------YGTFQGVANYYXXXXXXXXXXXXXXXXXXX 50
           M+++ KNRGV V                  YGTFQGVANY                    
Sbjct: 1   MSDQEKNRGVVVDHRHHEDQPPPPPPPQPQYGTFQGVANY--------PPPSQSHVIGFP 52

Query: 51  XXIAPHGSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
             + P G  A P  +  GY +   GYAV EGRPVR+ RLPCCG G+GWFL
Sbjct: 53  QPVPPPGITAEP--YAQGYQT-VPGYAVAEGRPVRQRRLPCCGCGVGWFL 99


>Q9SHG7_ARATH (tr|Q9SHG7) At1g17080/F6I1.24 OS=Arabidopsis thaliana GN=At1g17080
           PE=2 SV=1
          Length = 154

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 8/99 (8%)

Query: 3   EEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSI-AN 61
           EE K++G       Q   YGTFQGV+NY                       AP G   + 
Sbjct: 5   EEDKSKGFASEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPS-------APPGVYDSG 57

Query: 62  PQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
             Y+ HGY +      V EGRPVR+ RLPCCG+G+GWFL
Sbjct: 58  APYYAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFL 96


>D7KEP1_ARALY (tr|D7KEP1) 60S ribosomal protein L18A-1 OS=Arabidopsis lyrata
           subsp. lyrata GN=RPL18AA PE=4 SV=1
          Length = 314

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/105 (38%), Positives = 47/105 (44%), Gaps = 12/105 (11%)

Query: 3   EEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIANP 62
           E  K R   V    Q   YGTFQGVAN+                        P  +  N 
Sbjct: 4   EAAKPRESTVNQQQQQYLYGTFQGVANFPPPTPPPQFLQPHHPIATF-----PGHAYQNL 58

Query: 63  QYFPHGYNSFATG-------YAVIEGRPVREHRLPCCGLGMGWFL 100
           Q F  G+ ++A G       Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 59  QGFYGGFVNYAQGFPVVVLDYTVVEVRPMIEHELPCCGLGMGWFL 103


>A8MRF3_ARATH (tr|A8MRF3) Uncharacterized protein At1g29970.2 OS=Arabidopsis
           thaliana GN=At1g29970 PE=4 SV=1
          Length = 312

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXX----XXXXIAPH 56
           M EE      +        YYGTFQGVAN+                          +  H
Sbjct: 1   MDEEAAKPRDSTVNQQHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGH 60

Query: 57  GSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           G   N   +  G+      Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 61  GGGVN---YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFL 101


>Q0WNX5_ARATH (tr|Q0WNX5) 60S ribosomal protein L18A like OS=Arabidopsis thaliana
           GN=At1g29970 PE=2 SV=1
          Length = 158

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 1   MTEEGKNRGVNVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXX----XXXXIAPH 56
           M EE      +        YYGTFQGVAN+                          +  H
Sbjct: 1   MDEEAAKPRDSTVNQQHQYYYGTFQGVANFPTPTPPPQFMQPQHPITTFPGHAYQNLQGH 60

Query: 57  GSIANPQYFPHGYNSFATGYAVIEGRPVREHRLPCCGLGMGWFL 100
           G   N   +  G+      Y V+E RP+ EH LPCCGLGMGWFL
Sbjct: 61  GGGVN---YAQGFPVVVPDYTVVEVRPMIEHELPCCGLGMGWFL 101


>A7Y7F4_LUPAL (tr|A7Y7F4) Putative uncharacterized protein OS=Lupinus albus PE=2
           SV=1
          Length = 163

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 22  GTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHG----SIANPQYFPHGYNSFATGYA 77
           GTFQGV+NY                        PHG    S   P Y+ HGY +   GYA
Sbjct: 32  GTFQGVSNYPPPPPDLHPAIGFPQPA------PPHGFTNQSPPPPPYYTHGYQA-VPGYA 84

Query: 78  VIEGRPVREHRLPCCGLGMGWFL 100
           V EGRPV E RLP CGLG GWFL
Sbjct: 85  VAEGRPVSERRLPFCGLGCGWFL 107


>B8LRJ9_PICSI (tr|B8LRJ9) Putative uncharacterized protein OS=Picea sitchensis
           PE=2 SV=1
          Length = 151

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 19/97 (19%)

Query: 11  NVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIANPQYFPHGYN 70
           N    P   YYGTFQG  NY                      + P G++ +  Y+PHGY 
Sbjct: 10  NTRVVPGQAYYGTFQGAENY-----------PQQPVMGIPQPVPPPGAVGSEAYYPHGYQ 58

Query: 71  SFATGYA-------VIEGRPVREHRLPCCGLGMGWFL 100
           +   GY        V+E   VRE RLPCCG+G+GW L
Sbjct: 59  A-VPGYPSPQVYPPVVEADVVRERRLPCCGIGLGWAL 94


>A9NSW1_PICSI (tr|A9NSW1) Putative uncharacterized protein OS=Picea sitchensis
           PE=2 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 21/99 (21%)

Query: 11  NVTGNPQTQYYGTFQGVANYYXXXXXXXXXXXXXXXXXXXXXIAPHGSIANPQYFPHGYN 70
           N    P   YYGTFQG  NY                      + P G++ +  Y+PHGY 
Sbjct: 10  NTRVVPGQAYYGTFQGADNY-----------PQQPVMGIPQPVPPPGAVGSETYYPHGYQ 58

Query: 71  SFATGYA-------VIEGR--PVREHRLPCCGLGMGWFL 100
           +   GY        V+E    PVRE RLPCCG+G+GW L
Sbjct: 59  A-VPGYPSPQVYPPVVEADVVPVRERRLPCCGIGLGWAL 96