Jatropha Genome Database

JcCA0293541.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0293541.20 - phase: 2 /partial
         (75 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RI81_RICCO (tr|B9RI81) Putative uncharacterized protein OS=Ric...    96   1e-18
B9GM98_POPTR (tr|B9GM98) Predicted protein OS=Populus trichocarp...    65   3e-09

>B9RI81_RICCO (tr|B9RI81) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1576960 PE=4 SV=1
          Length = 71

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 4  MVVLISFVHSSRTRFQGDAADQKTARATEDLGISYMIKSLGKDASGIIAKDSAREVPTGP 63
          M V +SFV+SSRTR Q   A+  TA  T+DL  S+++KSLGK AS I  +DSAREVPTGP
Sbjct: 1  MAVFLSFVYSSRTRLQIRVAEDHTANVTQDLD-SHLVKSLGKGASAIYVEDSAREVPTGP 59

Query: 64 DPLHHNNNPTRP 75
          DPLHHN NPTRP
Sbjct: 60 DPLHHNRNPTRP 71


>B9GM98_POPTR (tr|B9GM98) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_750766 PE=4 SV=1
          Length = 113

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 21/96 (21%)

Query: 1   VIFMVVLISFVHSSRT-----RFQGDAADQ-------------KTARAT-EDLGISYMIK 41
           +I   VL+  VHSSR+     RF   A +                ARA+ +D+  SY I 
Sbjct: 18  IILTFVLMPLVHSSRSSSLNIRFTNMACNLIMFAMHETTVAAGNRARASAQDIHQSYKIT 77

Query: 42  SLGKDASGIIA-KDSAREVPTGPDPLHHNNNP-TRP 75
            +GK AS ++  ++S REVPTGPDPLHHNNNP TRP
Sbjct: 78  RMGKGASSLVTDEESEREVPTGPDPLHHNNNPTTRP 113