Jatropha Genome Database

JcCA0287661.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0287661.10 - phase: 0 /pseudo
         (74 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S397_RICCO (tr|B9S397) Ubiquitin-protein ligase, putative OS=R...    59   2e-07

>B9S397_RICCO (tr|B9S397) Ubiquitin-protein ligase, putative OS=Ricinus
          communis GN=RCOM_0731710 PE=4 SV=1
          Length = 358

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 1  MANLHSDLITEILLFLPVKPLWHLRCVSKQFCNLIDSPNFKKAHLN*KIH 50
          M++L  D+I ++LL LPVK L   RC+SK +C LID+P+F KAHL+  I 
Sbjct: 1  MSSLFPDIIFDVLLRLPVKTLLRFRCISKSYCTLIDNPDFIKAHLDTSIQ 50