Jatropha Genome Database

JcCA0286161.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0286161.20 - phase: 0 /pseudo/partial
         (111 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RF44_RICCO (tr|B9RF44) Protein binding protein, putative OS=Ri...    87   7e-16
A5BL96_VITVI (tr|A5BL96) Putative uncharacterized protein OS=Vit...    63   1e-08
D7U1Z0_VITVI (tr|D7U1Z0) Whole genome shotgun sequence of line P...    62   2e-08
B9NED4_POPTR (tr|B9NED4) Predicted protein OS=Populus trichocarp...    55   2e-06
B9MZU0_POPTR (tr|B9MZU0) Predicted protein OS=Populus trichocarp...    55   4e-06

>B9RF44_RICCO (tr|B9RF44) Protein binding protein, putative OS=Ricinus communis
           GN=RCOM_1431330 PE=4 SV=1
          Length = 276

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 42/52 (80%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           GFNIEAYD+VY QQLGWN P  TGE+AD EPS   P +PYLY FDDDSDET+
Sbjct: 225 GFNIEAYDEVYMQQLGWNAPTVTGEAADAEPSEQRPVIPYLYIFDDDSDETE 276


>A5BL96_VITVI (tr|A5BL96) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_015333 PE=4 SV=1
          Length = 262

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD+VY QQLGW NP AT E  + E +     VPYLY FD DSD TD
Sbjct: 212 GLNIEAYDEVYLQQLGWTNPMATTEGVE-EQNGHTHVVPYLYLFDYDSDGTD 262


>D7U1Z0_VITVI (tr|D7U1Z0) Whole genome shotgun sequence of line PN40024,
           scaffold_128.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00000035001 PE=4 SV=1
          Length = 299

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGATGESADVEPSVAIPAVPYLYSFDDDSDETD 111
           G NIEAYD+VY QQLGW NP AT E  + E +     VPYLY FD DSD TD
Sbjct: 249 GLNIEAYDEVYLQQLGWTNPMATTEGVE-EQNGHTHVVPYLYLFDYDSDGTD 299


>B9NED4_POPTR (tr|B9NED4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_939276 PE=4 SV=1
          Length = 182

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 8/52 (15%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGAT---GESADVEPSVAIPAVPYLYSFDDDSD 108
           G NIEAYD+VY QQ+GWN P  T   GES +       P VPYL+ FD DS+
Sbjct: 134 GLNIEAYDEVYLQQMGWNTPKTTEAAGESIEHN-----PVVPYLFIFDADSE 180


>B9MZU0_POPTR (tr|B9MZU0) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_595585 PE=4 SV=1
          Length = 271

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 33/52 (63%), Gaps = 8/52 (15%)

Query: 60  GFNIEAYDDVYTQQLGWNNPGAT---GESADVEPSVAIPAVPYLYSFDDDSD 108
           G NIEAYD+VY QQ+GWN P  T   GES +       P VPYLY FD +S+
Sbjct: 223 GLNIEAYDEVYLQQMGWNTPKTTEAGGESIEHN-----PVVPYLYIFDANSE 269