Jatropha Genome Database

JcCA0281201.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0281201.20 - phase: 0 /partial/short
         (34 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D7SW54_VITVI (tr|D7SW54) Whole genome shotgun sequence of line P...    58   3e-07
B9HFX9_POPTR (tr|B9HFX9) Predicted protein OS=Populus trichocarp...    56   2e-06
Q9LV91_ARATH (tr|Q9LV91) 4-alpha-glucanotransferase OS=Arabidops...    55   2e-06
D7MSK6_ARALY (tr|D7MSK6) Putative uncharacterized protein OS=Ara...    55   2e-06

>D7SW54_VITVI (tr|D7SW54) Whole genome shotgun sequence of line PN40024,
           scaffold_31.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00022223001 PE=4 SV=1
          Length = 585

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 2   GNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           GNWGWR+PSSMSFD +  EAK+LR LLS+YGR+
Sbjct: 553 GNWGWRLPSSMSFDDLESEAKKLRDLLSIYGRL 585


>B9HFX9_POPTR (tr|B9HFX9) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_1082701 PE=4 SV=1
          Length = 574

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 27/34 (79%)

Query: 1   FGNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           FGNW WRIPSSMSFD +  EA RL+ +LS YGR+
Sbjct: 541 FGNWRWRIPSSMSFDHLEDEATRLKDILSTYGRL 574


>Q9LV91_ARATH (tr|Q9LV91) 4-alpha-glucanotransferase OS=Arabidopsis thaliana
           GN=At5g64860 PE=2 SV=1
          Length = 576

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 2   GNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           GNWGWRIPSS SFD +  E+ RLR LLS+YGR+
Sbjct: 544 GNWGWRIPSSTSFDNLETESDRLRDLLSLYGRL 576


>D7MSK6_ARALY (tr|D7MSK6) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_496706 PE=4 SV=1
          Length = 564

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 27/33 (81%)

Query: 2   GNWGWRIPSSMSFDQMAKEAKRLRGLLSMYGRM 34
           GNWGWRIPSS SFD +  E+ RLR LLS+YGR+
Sbjct: 532 GNWGWRIPSSTSFDNLKTESDRLRDLLSLYGRL 564