Jatropha Genome Database

JcCA0278741.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278741.10 - phase: 0 /pseudo
         (313 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9GFU2_POPTR (tr|B9GFU2) Predicted protein OS=Populus trichocarp...    63   4e-08
C6TAK5_SOYBN (tr|C6TAK5) Putative uncharacterized protein OS=Gly...    62   7e-08
B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarp...    62   8e-08
D7UBP9_VITVI (tr|D7UBP9) Whole genome shotgun sequence of line P...    61   2e-07
B9N0S7_POPTR (tr|B9N0S7) Predicted protein OS=Populus trichocarp...    59   1e-06
B9RWC6_RICCO (tr|B9RWC6) Ubiquitin-protein ligase, putative OS=R...    58   1e-06
B9SIL6_RICCO (tr|B9SIL6) Putative uncharacterized protein OS=Ric...    57   2e-06
B9HTK7_POPTR (tr|B9HTK7) Predicted protein OS=Populus trichocarp...    56   6e-06

>B9GFU2_POPTR (tr|B9GFU2) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_752836 PE=4 SV=1
          Length = 372

 Score = 63.2 bits (152), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 18/138 (13%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNR-INAPHQNSLIFR 71
           ++  D++VDIL  LP+KS+ RF+   K W S+ISD +F +SH+   R +N+     L+  
Sbjct: 3   KLPQDIMVDILTYLPVKSLLRFKCVCKLWHSLISDPKFVKSHLKTAREVNSNKSQRLL-- 60

Query: 72  HLTMLNSESLE-KVVKQNDKTVDVDSNDLRIYKFSIPSKDR------LNVSCCCDGILCA 124
            L+    +S++ +   + D+       D  + +   P   R      + +   CDG++C 
Sbjct: 61  -LSTRTPQSVDFEAASEGDE-------DNAVQELEYPDVVRCSPTYFIGIMGSCDGLICL 112

Query: 125 TISIMRILLWTPLVEDYK 142
            +   +++LW P   DYK
Sbjct: 113 FVDYAKLVLWNPSTRDYK 130


>C6TAK5_SOYBN (tr|C6TAK5) Putative uncharacterized protein OS=Glycine max PE=2
           SV=1
          Length = 406

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 62/323 (19%)

Query: 14  IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVN-HNRINAPHQNSLIFRH 72
           + D+L+V+IL +LP+KS+ +FR   K W S+ISD  F + H++  +R      + +I   
Sbjct: 49  LPDELVVEILSRLPVKSLLQFRCVCKSWMSLISDPYFMKKHLHLSSRCTHFTHHRIILSA 108

Query: 73  LTM---LNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRL---NVSCCCDGILCATI 126
            T    L S SL  +      TV  D N         P K++     +   C+G+LC  I
Sbjct: 109 TTAEFHLKSCSLSSLFNNPSSTVCDDLN--------YPVKNKFRHDGIVGSCNGLLCFAI 160

Query: 127 SIMRILLWTPLVEDYKI*RVPVLRLILSCTMY*VLGMIR------LLMITKLCMFHPLQL 180
               +LLW P +   K  + P L        +   G+          ++   C   P + 
Sbjct: 161 KGDCVLLWNPSIRVSK--KSPPLGNNWRPGCFTAFGLGYDHVNEDYKVVAVFC--DPSEY 216

Query: 181 ILEDVRRLVF*L*GPTRGDKFMMTSNFLRMIPQ--KQFL*MEVCTGLLFDSTDSRRNTII 238
            +E   ++            + M +N  R I      FL  +     +  + +   N  I
Sbjct: 217 FIECKVKV------------YSMATNSWRKIQDFPHGFLPFQNSGKFVSGTLNWAANHSI 264

Query: 239 G---------FNLATEVFWEVLLPPSV------TPSKGPLQLRPLNSCLSLSNNEEDDSF 283
           G          +L  E + EV LPP        TPS G LQ      CL ++ + +   F
Sbjct: 265 GPSSFWVIVSLDLHKETYREV-LPPDYEKEDCSTPSLGVLQ-----GCLCMNYDYKKTHF 318

Query: 284 LEVWVLKDKK-QSAWSKFITIPY 305
           + VW++KD   + +W K ++IPY
Sbjct: 319 V-VWMMKDYGVRESWVKLVSIPY 340


>B9HZW3_POPTR (tr|B9HZW3) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_568920 PE=4 SV=1
          Length = 381

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 137/325 (42%), Gaps = 67/325 (20%)

Query: 14  IADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHL 73
           +++DLI +IL KLPIKS+ R  S  K W S+I    F   H+ H   +   QN  + R  
Sbjct: 5   LSEDLIQEILYKLPIKSLLRCTSLCKSWNSLIKSPTFIFKHLQHTISSTDRQNLFLLR-- 62

Query: 74  TMLNSESLEKVVKQNDKTVDVDSNDLRIY-KFSIP---SKDRLNVSCCCDGILC-ATIS- 127
                  L    ++   ++ +D+ D   + +   P   S+   +V    +G++C A I  
Sbjct: 63  -------LCSREREEQYSLRLDNQDFNEHMQLHFPFKSSESYFHVIGSSNGLICLANIFQ 115

Query: 128 --IMRILLWTPLVEDYKI*RVPVLRLILSCTMY*V------LGMIRLLMITK-------- 171
             I+  +LW PL++ Y I +  +L  + S   +          +IR++   K        
Sbjct: 116 SLIVSFILWNPLIQKYMIVKPRILGPVYSFVGFGYDSRANDYKLIRMVSFQKSKFRSENF 175

Query: 172 --LCMFHPLQLILEDVRRLVF*L*GPTRGDKFM-MTSNFLRMIPQKQFL*MEVCTGLLFD 228
             + ++   +     +R+      GP R D    ++S FL  +                D
Sbjct: 176 PEIALYSLNEGSWRGIRQT-----GPLRYDTDQRVSSAFLNGVVH--------WIAYRAD 222

Query: 229 STDSRRNTIIGFNLATEVFWEVLLPPSVTPSKGPLQLRPLNSCLSLSNNEEDD------S 282
             +   N ++GF+++ E+F E+ LP  +        +RP  SCLSL   +E        S
Sbjct: 223 QHEGVSNVVLGFDMSDEIFLEIALPSCLA------NVRP--SCLSLMVYKESSISVCQAS 274

Query: 283 FL-----EVWVLKDKK-QSAWSKFI 301
           FL      +WV+K+     +W+K +
Sbjct: 275 FLSSVQFHIWVMKEYGVVESWTKLV 299


>D7UBP9_VITVI (tr|D7UBP9) Whole genome shotgun sequence of line PN40024,
           scaffold_123.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00013506001 PE=4 SV=1
          Length = 423

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 131/320 (40%), Gaps = 58/320 (18%)

Query: 19  IVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRHLTMLNS 78
           ++DI L+LP+KS+ RFR   K W ++  D  F   H+     N+     L+F+HL+  +S
Sbjct: 25  LIDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANS--NGRLLFKHLS--SS 80

Query: 79  ESLEKVVKQNDKTVDVDSNDLRIYKFSIPSK-DRLNVSCCCDGILCATISIMR------- 130
           E     ++ N    +V     R  +  +PSK D   +    +G++C T S  +       
Sbjct: 81  EQEIYSLRSNIAFAEV-----RRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLN 135

Query: 131 ILLWTPLVEDYKI*RVPVLRLILSCTMY*VLGMIRLLMITKLCM-FHPLQLILEDVRRLV 189
           + LW P + +++           +   Y +      LM+  L   FHP+    + VR + 
Sbjct: 136 LFLWNPAIREFQ-----------TLPKYHINNFTSPLMVVGLGFAFHPVINDYKVVRIVY 184

Query: 190 F*L*GPTRGDKFMMTSNFLRMIPQKQFL*MEVCTGLLF------------DSTDSRRNTI 237
           F     +  D + + +   R +       +       F            +  D+  N I
Sbjct: 185 FMRNKTSEADVYSLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLI 244

Query: 238 IGFNLATEVFWEVLLP---------PSVTPSKGPLQLRPLNSCLSLSNNEEDDSFLEVWV 288
           + F++A +VF E++LP           +   KG L +   ++  S  N        +VWV
Sbjct: 245 LSFDMAKDVFKEIMLPDFGYDELIRKCLADYKGSLSVLFYDAYHSNEN-------CDVWV 297

Query: 289 LKDKK-QSAWSKFITIPYSI 307
           +++     +W+K  TI + I
Sbjct: 298 MEEYGVAKSWTKHFTIRHEI 317


>B9N0S7_POPTR (tr|B9N0S7) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_597059 PE=4 SV=1
          Length = 360

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 15/137 (10%)

Query: 13  EIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIFRH 72
           ++  ++IVDIL  LP KS+ +F+   + W+S+ISD +FA+ H+        H++  I R 
Sbjct: 3   KLPQEIIVDILTYLPAKSLIKFKCVCRSWRSLISDPQFAKLHLKR-----AHEDENINRQ 57

Query: 73  LTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVS-------CCCDGILCAT 125
             ++ ++ L  V    +   D D+ +  + K S P+ +  N S         CDGI+C  
Sbjct: 58  RLLIAADPLYSV--DFEAASDGDNGNTLV-KLSYPNAESHNDSFAVGLFLGSCDGIVCIL 114

Query: 126 ISIMRILLWTPLVEDYK 142
             +  ++LW P   + K
Sbjct: 115 NEVDSVVLWNPSTRESK 131


>B9RWC6_RICCO (tr|B9RWC6) Ubiquitin-protein ligase, putative OS=Ricinus communis
           GN=RCOM_1018000 PE=4 SV=1
          Length = 406

 Score = 58.2 bits (139), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)

Query: 5   SKKENPDKEIA---DDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRIN 61
           S +  PD  I+   +DLIV+IL ++P+K + RF+  SK W S+ISD RFA+  +   + N
Sbjct: 41  SAQAEPDTSISTLPEDLIVEILSRVPVKPLLRFKCVSKSWNSIISDPRFAKLQLKRAKEN 100

Query: 62  AP-HQNSLIFRHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSKDRLNVSCCCDG 120
           +    N L+   L+  +  SL+     +D   +  +N         P    + +   CDG
Sbjct: 101 SNISCNRLL---LSTWSPRSLDFEAFCDDDLSNTITNVSFPAIVKGPPTFYVRILGSCDG 157

Query: 121 ILCATISIMRILLWTPLVEDYKI*RVP---VLRLILSCTMY 158
           ++C       + LW P    YK    P   V R+ L    Y
Sbjct: 158 LVCLLDDYGTMFLWNPTTRQYKELPKPKGAVYRMFLHGIGY 198


>B9SIL6_RICCO (tr|B9SIL6) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0822970 PE=4 SV=1
          Length = 371

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 71/138 (51%), Gaps = 21/138 (15%)

Query: 12  KEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNH-----NRINAPHQN 66
           + I  +++++IL +LP+KS+ ++R   + W S+I++  F  +H+NH     NR+++    
Sbjct: 3   ENIPQEILIEILKRLPVKSLLKYRCVCQSWHSLITNSSFISTHINHSIECNNRVHS---- 58

Query: 67  SLIFRHLTMLNSESLEKVVKQNDKTVDVDSND--LRIYK---FSIPSKDRLNVSCCCDGI 121
                   ++  +S+    ++    +D DS D   R+Y+   F    +  L +   C+G+
Sbjct: 59  ------YALVKQKSVPDCKERFILYIDDDSGDEPFRVYQELDFPFKGERYLEIISSCNGL 112

Query: 122 LCATIS-IMRILLWTPLV 138
           +C + S   R  LW P++
Sbjct: 113 VCLSDSQYARFYLWNPVI 130


>B9HTK7_POPTR (tr|B9HTK7) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_770387 PE=4 SV=1
          Length = 381

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 23/135 (17%)

Query: 11  DKEIADDLIVDILLKLPIKSVARFRSTSKRWQSVISDLRFARSHVNHNRINAPHQNSLIF 70
           D  + +DL++ IL+ LP K + RFRS SK W S+I+   F   H+      A  +  L+F
Sbjct: 4   DGGLPEDLLITILMALPAKCLVRFRSVSKYWNSLITSAEFISIHL------AQAKPLLLF 57

Query: 71  RHLTMLNSESLEKVVKQNDKTVDVDSNDLRIYKFSIPSK---DRLNVSCCCDGILCATIS 127
            H     S      ++ +++++D+ SN     +F +PSK   D   +   C+G++C   S
Sbjct: 58  HHHNQSYS------LRLDNESLDMWSNS----EFELPSKREDDDFQIIGSCNGVICLLNS 107

Query: 128 IM----RILLWTPLV 138
                  I+LW P +
Sbjct: 108 PQDHGHSIILWNPSI 122