Jatropha Genome Database

JcCA0278551.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0278551.10 + phase: 2 /pseudo/partial
         (422 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RKK4_RICCO (tr|B9RKK4) Catalytic, putative OS=Ricinus communis...    82   8e-14
B9ILS1_POPTR (tr|B9ILS1) Predicted protein OS=Populus trichocarp...    62   9e-08

>B9RKK4_RICCO (tr|B9RKK4) Catalytic, putative OS=Ricinus communis GN=RCOM_1050610
           PE=4 SV=1
          Length = 676

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 68/138 (49%), Gaps = 19/138 (13%)

Query: 1   NEPVQDTSSFPILQSSTKSVMVRNALXXXXXXXXXXXXXXXXXXXXAVXXXXXXXXXXXX 60
           ++P+ D SSFPI+QSSTKSVMVRN L                    ++            
Sbjct: 51  SDPIYDKSSFPIIQSSTKSVMVRNPLTVDTSSLSKD----------SMLVKDAGLVGGSG 100

Query: 61  XLKRNSGDTEXXXXXXXXXXXXHFELAVANDGDTDGFVSEKEDLENPIELVVDRNIDDGF 120
            LKRN  DT               ELAV    D DGFVS++EDL+N IE VVDRN+DD F
Sbjct: 101 DLKRNREDTVNGFVSDDEELDNPIELAV----DNDGFVSDEEDLDNTIEFVVDRNVDDDF 156

Query: 121 PFEDVVDKNGTFILESIR 138
           P     D NGT  L+ I+
Sbjct: 157 P-----DSNGTSTLQIIK 169


>B9ILS1_POPTR (tr|B9ILS1) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_578514 PE=4 SV=1
          Length = 233

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 4/87 (4%)

Query: 83  HFELAVANDGDTD-GFVSEKEDLE---NPIELVVDRNIDDGFPFEDVVDKNGTFILESIR 138
           H +    N  DTD  F SE+ D+E   + I+L VDR+++D FP EDV D++ TF    ++
Sbjct: 37  HDDGTKKNTEDTDHDFSSEEGDMEVLDDVIQLEVDRDLEDDFPSEDVKDRHETFASGGVK 96

Query: 139 SRENNSIMDFASEAKIEIPLYQNVKSN 165
           + E+N ++  A+EA+  +PL +NVKS+
Sbjct: 97  TEESNPVLKLANEARFNLPLERNVKSD 123