Jatropha Genome Database

JcCA0270011.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0270011.10 - phase: 1 /pseudo/partial
         (272 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9REB5_RICCO (tr|B9REB5) LIGULELESS1 protein, putative OS=Ricinu...   253   1e-65
B9HIG5_POPTR (tr|B9HIG5) Predicted protein OS=Populus trichocarp...   226   1e-57
B9HXH7_POPTR (tr|B9HXH7) Putative uncharacterized protein OS=Pop...   215   4e-54
D7T9Z5_VITVI (tr|D7T9Z5) Whole genome shotgun sequence of line P...   149   4e-34
A5B110_VITVI (tr|A5B110) Putative uncharacterized protein OS=Vit...    85   1e-14
B9RLK6_RICCO (tr|B9RLK6) LIGULELESS1 protein, putative OS=Ricinu...    83   4e-14

>B9REB5_RICCO (tr|B9REB5) LIGULELESS1 protein, putative OS=Ricinus communis
           GN=RCOM_1620060 PE=4 SV=1
          Length = 512

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/231 (58%), Positives = 162/231 (70%), Gaps = 6/231 (2%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNSNGQFVSKSFLRLHGNGIQNTSGICPSATD 106
           M  GGIL P+ +E +NC RPVKLEEKS Y +N Q + KSFL LHGNGIQNTSGI P A++
Sbjct: 283 MRPGGILYPEIYEQANCCRPVKLEEKSCYGTNSQLLQKSFLHLHGNGIQNTSGISPPASE 342

Query: 107 EFTRLNTASTVHELAGVXXXXXXXXXXXXXXQDLSHSAGIIMARPSISQANRSHHSVGIS 166
           +FT  + +S +HELAGV              QDLSHSAGIIMARP ISQ  RSHH +G S
Sbjct: 343 DFTVFSASSNIHELAGVSHSSCALSLLSAESQDLSHSAGIIMARPLISQVGRSHHILGFS 402

Query: 167 DKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVSYAG---ELQVEPDGFLQES--DLL 221
           DK   + S EKY+ + F SSG++  K+NHMG    S AG   + Q+E D +LQ    D +
Sbjct: 403 DKS-SLGSSEKYVGDIFQSSGMSSLKTNHMGPLMGSCAGHATDGQIESDEYLQNQGPDFV 461

Query: 222 NAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTTYGA 272
           + K+C S ENG+TVDLLQLSSHLHRVEQQRNS QVKHE+E+ SSFL TYGA
Sbjct: 462 SDKFCISAENGTTVDLLQLSSHLHRVEQQRNSMQVKHELEECSSFLATYGA 512


>B9HIG5_POPTR (tr|B9HIG5) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_656548 PE=4 SV=1
          Length = 235

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/235 (54%), Positives = 149/235 (63%), Gaps = 11/235 (4%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNS-------NGQFVSKSFLRLHGNGIQNTSG 99
           ML G    P  +E  N  R +KLEE S+Y+S       NGQ + KSFL LHGNG+Q T G
Sbjct: 1   MLPGSAFCPGNYEEENWCRRIKLEENSIYSSPSAIPMGNGQLLPKSFLHLHGNGLQKTCG 60

Query: 100 ICPSATDEFTRLNTASTVHELAGVXXXXXXXXXXXXXXQDLSHSAGIIMARPSISQANRS 159
           I   A D+    NT +T HELAG               QDLSHSAG I ARP +SQ + +
Sbjct: 61  ISSPAIDDRNFCNT-TTFHELAGASHSSCALSLLSAESQDLSHSAGNITARPLVSQVSHA 119

Query: 160 HHSVGISDKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVS---YAGELQVEPDGFLQ 216
             S+G  +K  GV SLEKY PNG + SG+N  + N MG F V    +A + QVE DGFLQ
Sbjct: 120 CQSLGNVNKSLGVGSLEKYFPNGLYPSGMNFIEVNDMGPFVVPGSGHAADFQVETDGFLQ 179

Query: 217 ESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTTYG 271
           +SD+LNAKY  S ENGSTVDLLQLSSHL RVEQQRNS QVKHE E+F SF +TYG
Sbjct: 180 QSDILNAKYGVSPENGSTVDLLQLSSHLQRVEQQRNSMQVKHENEEFCSFGSTYG 234


>B9HXH7_POPTR (tr|B9HXH7) Putative uncharacterized protein OS=Populus trichocarpa
           GN=POPTRDRAFT_769914 PE=4 SV=1
          Length = 600

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 150/235 (63%), Gaps = 11/235 (4%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNS-------NGQFVSKSFLRLHGNGIQNTSG 99
           ML GG   P  +E  N  + VKLEE S+Y+S       NGQ + +SFL LHGN IQ T G
Sbjct: 304 MLPGGTFCPQSYEEDNWRKHVKLEENSIYSSPSAIPIRNGQLLPRSFLHLHGNRIQKTCG 363

Query: 100 ICPSATDEFTRLNTASTVHELAGVX-XXXXXXXXXXXXXQDLSHSAGIIMARPSISQANR 158
           I P  T++ T  NTA+T++ELAGV               QDLSHSAG IM RP +SQA  
Sbjct: 364 ISPLDTEDLTISNTATTINELAGVSHSSCALSLLSAAESQDLSHSAGNIMVRPLVSQAGG 423

Query: 159 SHHSVGISDKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVS---YAGELQVEPDGFL 215
           +  ++GI++K  G  S EKY+P G +S G+N  + ++MG F VS   +A +L+VE DGFL
Sbjct: 424 ACQTLGIANKSLGGGSSEKYVPIGINSFGMNFIEVDNMGPFGVSGSGHAADLKVETDGFL 483

Query: 216 QESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTTY 270
             SD LNAK+C S  N STVD LQLSSHL RVEQQRNS +VKHE EDF SF  TY
Sbjct: 484 HHSDFLNAKHCVSPANESTVDWLQLSSHLQRVEQQRNSMKVKHENEDFCSFGATY 538


>D7T9Z5_VITVI (tr|D7T9Z5) Whole genome shotgun sequence of line PN40024,
           scaffold_11.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00012247001 PE=4 SV=1
          Length = 498

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/234 (42%), Positives = 123/234 (52%), Gaps = 11/234 (4%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEEKSVYNS------NGQFVSKSFLRLHGNGIQNTSGI 100
           +L G +  PD +  +N  R +KLE++ +Y+S      +GQ   KSFL L+G   Q   G 
Sbjct: 265 ILPGSVYCPDGYGQANPSRSIKLEKEPIYSSQLVIPISGQLPPKSFLHLYGTERQCPPGF 324

Query: 101 CPSATDEFTRLNTASTVHELAGVXXXXXXXXXXXXXXQDLS-HSAGIIMARPSISQANRS 159
             S T++ T    ASTV EL GV              QDLS H  GI MA P   Q   +
Sbjct: 325 LSSGTEDCTGFYPASTVQELPGVSKSNCALSLLSAQSQDLSNHLMGIPMANPPTVQGCHA 384

Query: 160 HHS-VGISDKPFGVESLEKYLPNGFHSSGLNPFKSNHMGSFTVSYAGE---LQVEPDGFL 215
           H+S V  SDKP G+ SLEK+  NG +SS +N  +   MG   +   G     +V  +   
Sbjct: 385 HYSAVHNSDKPIGMSSLEKFASNGSYSSRMNSVEVAQMGPVMLPDGGNAVSFEVRTNRNF 444

Query: 216 QESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVKHEVEDFSSFLTT 269
           Q SD LNAKY  S E   TVDLLQLSSHL RVE QRN   VK E +DF  F TT
Sbjct: 445 QGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVEWQRNYMHVKQENDDFHCFPTT 498


>A5B110_VITVI (tr|A5B110) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_040028 PE=4 SV=1
          Length = 686

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 73/131 (55%), Gaps = 9/131 (6%)

Query: 145 GIIMARPSISQANRSHHSVG-ISDKPFGVE---SLEKYLPNGFHSSGLNPFKSNHMGSFT 200
           GI M  P I     +H+++  +S+K  GV    S+ + +PN F SSG+N  + NH+G   
Sbjct: 558 GIPMIHPLIXPGCHAHYNIAQVSEKFLGVSPQVSMSR-VPNKFLSSGMNSAEGNHLGPIL 616

Query: 201 VSYAGE---LQVEPDGFLQESDLLNAKYCASDENGSTVDLLQLSSHLHRVEQQRNSAQVK 257
           +S   E    +V  DG  Q SD +N K C   E G T+DLLQLSS LHRVE QR S  VK
Sbjct: 617 ISDCSEPVNFEVT-DGIFQGSDFVNTKDCLPCETGPTIDLLQLSSQLHRVEHQRQSIHVK 675

Query: 258 HEVEDFSSFLT 268
            E + F   +T
Sbjct: 676 QENDTFCLRIT 686


>B9RLK6_RICCO (tr|B9RLK6) LIGULELESS1 protein, putative OS=Ricinus communis
           GN=RCOM_1468500 PE=4 SV=1
          Length = 557

 Score = 82.8 bits (203), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 52/267 (19%)

Query: 47  MLAGGILSPDRHEASNCYRPVKLEE------------------KSVYNSNGQFVSKSFLR 88
           +L GG + P R+   N  R +K+E+                  KS++ SN   + K FL 
Sbjct: 287 ILPGGPMHPKRYGTDNWCRQIKVEDGYFNPLSSIPVSSGHPHSKSLFPSNN--LDKVFLA 344

Query: 89  LHGNGIQNTSGICPSATD--------------------------EFTRLNTASTVHELAG 122
            HGN     +G   S +                           +F+  + AS V  ++G
Sbjct: 345 CHGNEATTATGSTLSESTNRYPHDLGGSISSSQSLIQDASLGQADFSAFDAASNVQGVSG 404

Query: 123 VXXXXXXXXXXXXXXQDLSHSAGII-MARPSISQANRSHHSVG-ISDKPFGVESLEKY-- 178
           +               +LS  +  I MA P +     SH+SV  +S+K  G+ S      
Sbjct: 405 ITNSGSALSLLSSQSHNLSSHSSGISMACPLVLPGRSSHYSVSQVSEKLVGISSQASAGA 464

Query: 179 LPNGFHSSGLNPFKSNHMGSFTVSYAGELQ--VEPDGFLQESDLLNAKYCASDENGSTVD 236
           + N F SSG +  + + +GS  +S   +    V  DG  Q S+ +NAK C S E+G+T+D
Sbjct: 465 MQNKFSSSGTSSAEGSRLGSILLSDGSDAINFVIADGMYQGSNFMNAKDCLSCEDGTTID 524

Query: 237 LLQLSSHLHRVEQQRNSAQVKHEVEDF 263
           LLQLSS L RVE+Q+ S QVK E + F
Sbjct: 525 LLQLSSQLERVERQKQSMQVKQENDAF 551