Jatropha Genome Database

JcCA0265541.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0265541.20 - phase: 0 /TE/partial
         (396 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2HUC4_MEDTR (tr|Q2HUC4) Polynucleotidyl transferase, Ribonuclea...    57   3e-06
Q9SZD8_ARATH (tr|Q9SZD8) Putative reverse transcriptase/RNA-depe...    57   5e-06

>Q2HUC4_MEDTR (tr|Q2HUC4) Polynucleotidyl transferase, Ribonuclease H fold
           OS=Medicago truncatula GN=MtrDRAFT_AC149204g14v2 PE=4
           SV=1
          Length = 393

 Score = 57.4 bits (137), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 17/138 (12%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIE--------EYQLVPWESNMQ 239
           W +W +RN  +WQQ    S  I+   ++ L  WR AN  +             P   + Q
Sbjct: 164 WSIWKSRNLKLWQQVSESSVTILERAKHLLEGWRKANHKQGLLGQVHSPTNSRPQTHDSQ 223

Query: 240 N--------RWHPLLTG-FKCNVDASFDPNSVHAAAGWIVRDCAGRCMGGRAMKLGRVTS 290
           N        RW    +G  KCNVDASF  +S     G  +RD  G  +  + M    +  
Sbjct: 224 NTDNRYGNIRWRKPKSGRLKCNVDASFSTSSNKVGIGMCIRDSEGNHVRSKTMWFSPLCP 283

Query: 291 APIAEAIVVREALSWLKK 308
             I EA+ +  A  W+ +
Sbjct: 284 VNIGEALGLYHATRWINE 301


>Q9SZD8_ARATH (tr|Q9SZD8) Putative reverse transcriptase/RNA-dependent DNA
           polymerase OS=Arabidopsis thaliana GN=F19B15.120 PE=2
           SV=1
          Length = 575

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 88/174 (50%), Gaps = 18/174 (10%)

Query: 188 WDLWNARNKLIWQQQVRDSAAIVRHVQYSLNAWRIANSIEEYQLVPWESNMQN--RWHPL 245
           W LW  RN+L+++ +  ++  ++R  +  L  WRI    E     P + N  +  RW P 
Sbjct: 365 WRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKP-QVNRSSCGRWRPP 423

Query: 246 LTGF-KCNVDASFDPNSVHAAAGWIVRDCAG--RCMGGRAMKLGRVTSAPIAEAIVVREA 302
              + KCN DA+++ ++     GW++R+  G  + MG RA  L ++ S   AE   +R A
Sbjct: 424 PHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARA--LPKLKSVLEAELEAMRWA 481

Query: 303 LSWLKKQYQGHRLLLENDNLLVIQ---------ALLKKVRITLILVPQFGIVKF 347
           +  L + +Q + ++ E+D+ ++I+         +L   ++    L+ QF  VKF
Sbjct: 482 VLSLSR-FQYNYVIFESDSQVLIEILNNDEIWPSLKPTIQDLQRLLSQFTEVKF 534