Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0261271.10 + phase: 0 
         (134 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9GL16_POPTR (tr|B9GL16) ABC transporter family protein OS=Popul...    90   9e-17
B9RYQ1_RICCO (tr|B9RYQ1) Putative uncharacterized protein OS=Ric...    90   1e-16
D7KS83_ARALY (tr|D7KS83) ATGCN3 OS=Arabidopsis lyrata subsp. lyr...    87   8e-16
Q8W1S2_SOYBN (tr|Q8W1S2) ABC transporter-like protein OS=Glycine...    80   8e-14
D7TVM3_VITVI (tr|D7TVM3) Whole genome shotgun sequence of line P...    78   3e-13

>B9GL16_POPTR (tr|B9GL16) ABC transporter family protein OS=Populus trichocarpa
           GN=POPTRDRAFT_815018 PE=4 SV=1
          Length = 716

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 50/103 (48%), Positives = 54/103 (52%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVA+SVVHEVLGPR  +VDQPI+DYIINV                           CV
Sbjct: 1   MTEVANSVVHEVLGPRFLEVDQPIIDYIINVLADEDFDFGDEGEGAFNAIGELLVGAECV 60

Query: 61  SDFEECRL----------------QKPTVRSLTAPIRMNDGMD 87
           SDF ECRL                 KPTVRSLT P RM+DGMD
Sbjct: 61  SDFSECRLVCSKLSDKFGKHGLVKPKPTVRSLTTPFRMDDGMD 103


>B9RYQ1_RICCO (tr|B9RYQ1) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1312530 PE=4 SV=1
          Length = 382

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 55/103 (53%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVA+SVVHEVLG RVQDVDQPIVDYIINV                           CV
Sbjct: 1   MTEVATSVVHEVLGRRVQDVDQPIVDYIINVLADEDFDFGEEGEGAFDAIGELLVGAGCV 60

Query: 61  SDFEECRL----------------QKPTVRSLTAPIRMNDGMD 87
           SDF+ECRL                 KP VRSLT P RMN+GMD
Sbjct: 61  SDFDECRLVCSKLCDRFGKHGLVKPKPAVRSLTTPFRMNEGMD 103


>D7KS83_ARALY (tr|D7KS83) ATGCN3 OS=Arabidopsis lyrata subsp. lyrata
           GN=ARALYDRAFT_474891 PE=4 SV=1
          Length = 715

 Score = 86.7 bits (213), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/103 (47%), Positives = 54/103 (52%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVASSVV+EVLG R QDVD+PI+DYIINV                           CV
Sbjct: 1   MTEVASSVVYEVLGRRAQDVDEPIMDYIINVLADEDFDFGEEGEGAFDAVGELLVAAECV 60

Query: 61  SDFEECRL----------------QKPTVRSLTAPIRMNDGMD 87
           SDF+ECRL                  PTVRSL  P+RMNDGMD
Sbjct: 61  SDFDECRLVCSKLSDKFGKHGLVKPTPTVRSLAMPVRMNDGMD 103


>Q8W1S2_SOYBN (tr|Q8W1S2) ABC transporter-like protein OS=Glycine max PE=2 SV=1
          Length = 636

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/103 (43%), Positives = 49/103 (47%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVA SVVH+VLG RV DVDQPIVDYI+NV                           CV
Sbjct: 1   MTEVARSVVHDVLGQRVVDVDQPIVDYIVNVLADDDFDFGLDGQGAFEALGELLVAAGCV 60

Query: 61  SDFEECR----------------LQKPTVRSLTAPIRMNDGMD 87
            DF  CR                 +KP VR L AP RMN+GMD
Sbjct: 61  DDFSHCRSVCSTLCDKFGKHGLVKEKPAVRGLAAPFRMNEGMD 103


>D7TVM3_VITVI (tr|D7TVM3) Whole genome shotgun sequence of line PN40024,
           scaffold_25.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00019609001 PE=4 SV=1
          Length = 716

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 46/103 (44%), Positives = 50/103 (48%), Gaps = 16/103 (15%)

Query: 1   MTEVASSVVHEVLGPRVQDVDQPIVDYIINVXXXXXXXXXXXXXXXXXXXXXXXXXXXCV 60
           MTEVASSV+HEVLG R  DVDQPI+DYI+NV                           CV
Sbjct: 1   MTEVASSVIHEVLGRRALDVDQPIIDYIVNVLADDDFDFGFQGEGAVDAIGELLVDSGCV 60

Query: 61  SDFEECR----------------LQKPTVRSLTAPIRMNDGMD 87
           SD  ECR                  KP VRSL AP+RM DGMD
Sbjct: 61  SDDAECRSVCSILCEKFGKHGLVKPKPAVRSLAAPLRMFDGMD 103