Jatropha Genome Database

JcCA0257621.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0257621.10 - phase: 0 
         (93 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9MUV6_POPTR (tr|B9MUV6) Predicted protein OS=Populus trichocarp...   110   4e-23
B9SEE0_RICCO (tr|B9SEE0) RNA binding protein, putative OS=Ricinu...   102   2e-20
A5BBD6_VITVI (tr|A5BBD6) Putative uncharacterized protein OS=Vit...    88   3e-16
D7UDV8_VITVI (tr|D7UDV8) Whole genome shotgun sequence of line P...    88   4e-16
D7M9H6_ARALY (tr|D7M9H6) tRNA/rRNA methyltransferase family prot...    87   5e-16

>B9MUV6_POPTR (tr|B9MUV6) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_796353 PE=4 SV=1
          Length = 109

 Score =  110 bits (276), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 57/93 (61%), Positives = 70/93 (75%)

Query: 1  MSAAESNSMEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKD 60
          M+A ESN M  I+SSLS SFKQVPL A+P MLDCILASTGLS ++LF SLLDSF    KD
Sbjct: 1  MNAEESNPMVSIISSLSDSFKQVPLAALPAMLDCILASTGLSPSALFASLLDSFSKFIKD 60

Query: 61 FIKEDQKLDSGCCDFLMSIVGALCHLLKKLGEF 93
            ++D KLDS  C+++ S+VG+LCHLL K   +
Sbjct: 61 VREKDLKLDSSMCNYITSMVGSLCHLLNKFDAY 93


>B9SEE0_RICCO (tr|B9SEE0) RNA binding protein, putative OS=Ricinus communis
          GN=RCOM_0702910 PE=4 SV=1
          Length = 1744

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 68/83 (81%), Gaps = 5/83 (6%)

Query: 9  MEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKL 68
          M+ ++SSLS SFK+VPL AIP +LDCILASTGLS +SLF    DSF +++K+FIKE +KL
Sbjct: 1  MDTLISSLSRSFKKVPLSAIPAILDCILASTGLSPSSLF----DSFLHVTKEFIKE-EKL 55

Query: 69 DSGCCDFLMSIVGALCHLLKKLG 91
          D   CD+L+S+VGALCHLLKK G
Sbjct: 56 DYSHCDYLISMVGALCHLLKKPG 78


>A5BBD6_VITVI (tr|A5BBD6) Putative uncharacterized protein OS=Vitis vinifera
          GN=VITISV_010308 PE=4 SV=1
          Length = 988

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%)

Query: 9  MEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKL 68
          M  +VSSLS+SF+QVP   IP MLDCILA+T  S +SLF  LLD+F +L+KD  K+ +KL
Sbjct: 1  MASLVSSLSNSFRQVPQAGIPAMLDCILAATASSPSSLFALLLDAFHDLTKDIAKDGKKL 60

Query: 69 DSGCCDFLMSIVGALCHLLKKLG 91
          DS  C+ + S V  +CHLL+K G
Sbjct: 61 DSDQCNHVSSFVCGVCHLLEKSG 83


>D7UDV8_VITVI (tr|D7UDV8) Whole genome shotgun sequence of line PN40024,
          scaffold_204.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00003687001 PE=4 SV=1
          Length = 6988

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%)

Query: 9  MEFIVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKL 68
          M  +VSSLS+SF+QVP   IP MLDCILA+T  S +SLF  LLD+F +L+KD  K+ +KL
Sbjct: 1  MASLVSSLSNSFRQVPQAGIPAMLDCILAATASSPSSLFALLLDAFHDLTKDIAKDGKKL 60

Query: 69 DSGCCDFLMSIVGALCHLLKKLG 91
          DS  C+ + S V  +CHLL+K G
Sbjct: 61 DSDQCNHVSSFVCGVCHLLEKSG 83


>D7M9H6_ARALY (tr|D7M9H6) tRNA/rRNA methyltransferase family protein
          OS=Arabidopsis lyrata subsp. lyrata
          GN=ARALYDRAFT_493117 PE=4 SV=1
          Length = 1852

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 12 IVSSLSSSFKQVPLPAIPPMLDCILASTGLSSASLFYSLLDSFPNLSKDFIKEDQKLDSG 71
          +++SLS SFKQVP  A+P  LDC+L+STG+SS++LF SL++ FP   +D +  D++ DS 
Sbjct: 5  VITSLSLSFKQVPPAAVPAFLDCVLSSTGVSSSTLFESLIEQFPFRLEDTVNGDKRFDSD 64

Query: 72 CCDFLMSIVGALCHLLKKLG 91
           C+ + S+V  LCHLL+  G
Sbjct: 65 DCNHIASLVAGLCHLLRNFG 84