Jatropha Genome Database

JcCA0247421.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0247421.10 + phase: 1 /partial
         (65 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S6S4_RICCO (tr|B9S6S4) DNA-damage-inducible protein f, putativ...    61   4e-08
B9H1R1_POPTR (tr|B9H1R1) Predicted protein (Fragment) OS=Populus...    57   9e-07
B9SIJ1_RICCO (tr|B9SIJ1) DNA-damage-inducible protein f, putativ...    56   1e-06

>B9S6S4_RICCO (tr|B9S6S4) DNA-damage-inducible protein f, putative OS=Ricinus
           communis GN=RCOM_0872780 PE=4 SV=1
          Length = 447

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 24  GLCLFMGMRTIAGYMRLLSRNGPWWFLQDDID 55
           GL LFMG+RT+AGYMRL+S+ GPWWFL DDI+
Sbjct: 416 GLTLFMGLRTVAGYMRLVSKKGPWWFLLDDIN 447


>B9H1R1_POPTR (tr|B9H1R1) Predicted protein (Fragment) OS=Populus trichocarpa
           GN=POPTRDRAFT_713453 PE=4 SV=1
          Length = 442

 Score = 56.6 bits (135), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 26/30 (86%)

Query: 24  GLCLFMGMRTIAGYMRLLSRNGPWWFLQDD 53
           GL LFMG+RT AGYMRLLS++GPWWF+  D
Sbjct: 413 GLALFMGLRTAAGYMRLLSKSGPWWFMHKD 442


>B9SIJ1_RICCO (tr|B9SIJ1) DNA-damage-inducible protein f, putative OS=Ricinus
           communis GN=RCOM_1419660 PE=4 SV=1
          Length = 605

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/31 (67%), Positives = 27/31 (87%)

Query: 24  GLCLFMGMRTIAGYMRLLSRNGPWWFLQDDI 54
           GL LFMG+RT AGY+R+LS++GPWWFL  D+
Sbjct: 552 GLALFMGLRTAAGYIRILSKSGPWWFLHKDL 582