Jatropha Genome Database

JcCA0220511.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0220511.30 + phase: 0 /TE/partial
         (239 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5C9U3_VITVI (tr|A5C9U3) Putative uncharacterized protein OS=Vit...    79   4e-13
Q0KIS1_SOLDE (tr|Q0KIS1) Retrotransposon gag protein OS=Solanum ...    70   1e-10
B9I146_POPTR (tr|B9I146) Predicted protein OS=Populus trichocarp...    67   1e-09
A5BKJ7_VITVI (tr|A5BKJ7) Putative uncharacterized protein OS=Vit...    66   3e-09
Q6L3S3_SOLDE (tr|Q6L3S3) Putative gag-pol polyprotein, identical...    62   4e-08
Q6L3S2_SOLDE (tr|Q6L3S2) Putative retrotransposon protein, ident...    62   4e-08
Q60D42_SOLTU (tr|Q60D42) Zinc knuckle family protein OS=Solanum ...    60   2e-07
A5B3B2_VITVI (tr|A5B3B2) Putative uncharacterized protein OS=Vit...    59   6e-07
A5BRX9_VITVI (tr|A5BRX9) Putative uncharacterized protein OS=Vit...    58   7e-07
Q7XKY8_ORYSJ (tr|Q7XKY8) OSJNBa0022F16.16 protein OS=Oryza sativ...    58   7e-07
Q60CW7_SOLTU (tr|Q60CW7) Gag-pol polyprotein, putative OS=Solanu...    55   8e-06

>A5C9U3_VITVI (tr|A5C9U3) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_010121 PE=4 SV=1
          Length = 1797

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 94  CAHCGRRHGG-DCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXXX 152
           C  CG++HGG  C+   G C+ CG   H  +DCP+  K    FIT               
Sbjct: 715 CPTCGKKHGGRPCYREIGACFCCGEQGHLIRDCPENRK----FITGKPKEENKK------ 764

Query: 153 XTVDRPDTRGPARVYAMRAREDEEAPDVIVGEFSLCDHTVYA--LIDPGSSHSYISVPKP 210
              D+   +    V+AM  R+ +   DV+ G   +  HT++A  LID GS+HS++SV   
Sbjct: 765 ---DKQKPKAQGWVFAMTHRDAQATSDVVTGTLRI--HTLFARVLIDLGSTHSFVSVSFA 819

Query: 211 WVKGLEVAYVSQGMIVTNPLGDVV 234
            + GL VA +   +IV  P+GD V
Sbjct: 820 GLLGLPVASMDFDLIVATPVGDSV 843


>Q0KIS1_SOLDE (tr|Q0KIS1) Retrotransposon gag protein OS=Solanum demissum
           GN=SDM1_46t00011 PE=4 SV=1
          Length = 4543

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 91  FPPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXX 150
           FP CA CGR H G C      C+ CG   H  K+CPK  +   +  +             
Sbjct: 277 FPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSSISPPDRM 336

Query: 151 XXXTVDRPDTRGPARVYAMRAR-EDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYISVPK 209
                      G  R+YA+ +R E E +P+V+ G   +    VYAL+DPG+S S+++   
Sbjct: 337 ASRGATSSTGGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFVT--- 393

Query: 210 PWVKG-LEV--AYVSQGMIVTNPLGDVVRTHTV 239
           P+V    EV    + +   V+ P+G+ +    V
Sbjct: 394 PYVANQFEVLPERLCEPFCVSTPVGESILAERV 426



 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 91   FPPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXX 150
            FP CA CGR H G C      C+ CG   H  K+CPK  +   +  +             
Sbjct: 1787 FPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSSISPLDRM 1846

Query: 151  XXXTVDRPDTRGPARVYAMRAR-EDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYISVPK 209
                       G  R+YA+ +R E E +P+V+ G   +    VYAL+DPG+S S+++   
Sbjct: 1847 ASRGATSSTGGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFVT--- 1903

Query: 210  PWVKG-LEV--AYVSQGMIVTNPLGDVVRTHTV 239
            P+V    EV    + +   V+ P+G+ +    V
Sbjct: 1904 PYVANQFEVLPERLCEPFCVSTPVGESILAERV 1936



 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 7/153 (4%)

Query: 91   FPPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXX 150
            FP CA CGR H G C      C+ CG   H  K+CPK  +   +  +             
Sbjct: 3297 FPACAKCGRVHPGKCRQGQTCCFRCGQEGHFMKECPKNKQSSEKLGSRAQSSSISPLDRM 3356

Query: 151  XXXTVDRPDTRGPARVYAMRAR-EDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYISVPK 209
                       G  R+YA+ +R E E +P+V+ G   +    VYAL+DPG+S S+++   
Sbjct: 3357 ASRGATSSTGGGANRLYAITSRHEQENSPNVVTGMIKVFVFNVYALLDPGASLSFVT--- 3413

Query: 210  PWVKG-LEV--AYVSQGMIVTNPLGDVVRTHTV 239
            P+V    EV    + +   V+ P+G+ +    V
Sbjct: 3414 PYVANQFEVLPERLCEPFCVSTPVGESILAERV 3446


>B9I146_POPTR (tr|B9I146) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_771394 PE=4 SV=1
          Length = 430

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 76/180 (42%), Gaps = 38/180 (21%)

Query: 89  YPFPPCAHCGRRHGGDCWLVTGKCWIC--------------------GASDHQKKDCPKR 128
           Y F  C  C +RH GDC  + G+C+IC                    G + H KKDCP+R
Sbjct: 185 YLF--CQRCEQRHPGDCSAMPGRCYICRGDRHQWKECPHVGKGCYYYGETSHMKKDCPRR 242

Query: 129 A---------KVPTQFITXXXXXXXXXXXXXXXXTVDRP---DTRGPARVYAMRAREDEE 176
                     +V +Q  +                T  RP   + R   RVY M   +   
Sbjct: 243 TTEGAHGQRIEVQSQQQSVTVNRPIRPTQSGMSATRGRPRNQEGRTQGRVYHMTYEDVGV 302

Query: 177 APDVIVGEFSLCDHTVYALIDPGSSHSYISVPKPWVKGLEV--AYVSQGMIVTNPLGDVV 234
            PDV+ G   L    +YALIDPG+SHS  SV    V  + V  + +  G+ V+ PLG+ +
Sbjct: 303 VPDVVAGILQLDTMQIYALIDPGASHS--SVSYRIVNNMHVLSSNLGVGVTVSTPLGENI 360


>A5BKJ7_VITVI (tr|A5BKJ7) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_018924 PE=4 SV=1
          Length = 548

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 18/144 (12%)

Query: 94  CAHCGRRHGGD-CWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXXX 152
           C  CG++HGG  C+     C+  G   H  +DC +  K    FIT               
Sbjct: 334 CPTCGKKHGGRPCYREIEACFGYGKQRHLIRDCLENRK----FITGKPKEENKENK---- 385

Query: 153 XTVDRPDTRGPARVYAMRAREDEEAPDVIVGEFSLCDHTVYA--LIDPGSSHSYISVPKP 210
               +P  +G  RV+AM  R+ + + DV++G   +  HT++A  LIDP S+HS++ V   
Sbjct: 386 ---QKPKAQG--RVFAMTHRDAQASSDVVIGTLRI--HTLFARVLIDPESTHSFVLVSFV 438

Query: 211 WVKGLEVAYVSQGMIVTNPLGDVV 234
            + GL VA +   +IV  P+GD V
Sbjct: 439 GLLGLPVASMYFDLIVATPVGDSV 462


>Q6L3S3_SOLDE (tr|Q6L3S3) Putative gag-pol polyprotein, identical OS=Solanum
           demissum GN=SDM1_41t00016 PE=4 SV=1
          Length = 1515

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 91  FPPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXX 150
           FP CA CGR H G C      C+ CG   H  K+CPK  +      +             
Sbjct: 373 FPACARCGRTHPGKCRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRM 432

Query: 151 XXXTVDRPDTRGPARVYAMRAR-EDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYIS 206
                      G  R+YA+ +R E E +P+V+     +    VYAL+DPG+S S+++
Sbjct: 433 TPRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFVT 489


>Q6L3S2_SOLDE (tr|Q6L3S2) Putative retrotransposon protein, identical OS=Solanum
           demissum GN=SDM1_41t00017 PE=4 SV=1
          Length = 1602

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 91  FPPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXX 150
           FP CA CGR H G C      C+ CG   H  K+CPK  +      +             
Sbjct: 379 FPACARCGRTHPGKCRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRM 438

Query: 151 XXXTVDRPDTRGPARVYAMRAR-EDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYIS 206
                      G  R+YA+ +R E E +P+V+     +    VYAL+DPG+S S+++
Sbjct: 439 TPRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFVT 495


>Q60D42_SOLTU (tr|Q60D42) Zinc knuckle family protein OS=Solanum tuberosum
           GN=STB1_54t00006 PE=4 SV=2
          Length = 347

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 92  PPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXX 151
           P CA CGR H G C      C+ CG   H  K+CPK  +                     
Sbjct: 191 PACARCGRTHIGKCRDGQTGCFKCGQEGHFLKECPKNRQGSGNLSNRAQASSVAPPYMMV 250

Query: 152 XXTVDRPDTRGPARVYAMRA-REDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYI 205
                     G  R+YA+ + +E +++PDV+ G   + D  VY L+DP +S S++
Sbjct: 251 PRGATSSTGGGVNRLYAINSCQEQDDSPDVVTGMIRVFDFVVYVLLDPRASLSFV 305


>A5B3B2_VITVI (tr|A5B3B2) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_019884 PE=4 SV=1
          Length = 415

 Score = 58.5 bits (140), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 18/146 (12%)

Query: 94  CAHCGRRHGGD-CWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXXX 152
           C+ CG++H G   +   G C+ CG   H  +DCP+  K    FI                
Sbjct: 9   CSSCGKKHEGRPYYRKIGACFGCGKQGHMVQDCPENKK----FIIXKPKEENKE------ 58

Query: 153 XTVDRPDTRGPARVYAMRAREDEEAPDVIVGEFSLCDHTVYA--LIDPGSSHSYISVPKP 210
              D+   R   RV+AM  R+ +   DV+     +  HT++A  LID G +HS++S+   
Sbjct: 59  ---DKQKPRAQGRVFAMTHRDAQATYDVVTSTIRI--HTLFAXALIDLGLTHSFVSISFV 113

Query: 211 WVKGLEVAYVSQGMIVTNPLGDVVRT 236
              G+ VA +   +IV   +G  V T
Sbjct: 114 GXLGMPVACMDFDLIVAILMGVSVMT 139


>A5BRX9_VITVI (tr|A5BRX9) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_035077 PE=4 SV=1
          Length = 1194

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 156 DRPDTRGPARVYAMRAREDEEAPDVIVGEFSLCDHTVYA--LIDPGSSHSYISVPKPWVK 213
           DR   R   RV+AM  R+ +   DV++G   +  HT++A  LIDPGS+HS++SV    + 
Sbjct: 177 DRQKLRAQGRVFAMTHRDAQTTFDVVIGTLQI--HTLFARALIDPGSTHSFVSVSFAGLL 234

Query: 214 GLEVAYVSQGMIVTNPLGDVV 234
           G+ +  +   + V  PLGD V
Sbjct: 235 GMSIDNMDFDLFVAIPLGDSV 255


>Q7XKY8_ORYSJ (tr|Q7XKY8) OSJNBa0022F16.16 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0022F16.16 PE=4 SV=1
          Length = 1402

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 110 GKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXXXXTVDRPDTR------GP 163
           G C+ CG   H    CP   K P +                       P T       G 
Sbjct: 224 GSCFNCGEYGHFANKCPHLNKTPIRTGANAMAIHGAATPAAGRGLFRTPQTNRTATGFGR 283

Query: 164 ARVYAMRAREDEEAPDVIVGEFSLCDHTVYALIDPGSSHSYISVPKPWVKGLEVAYVSQG 223
            +V  +RA E +E   V++G FS+    V  L+D G+SHS+IS+       L +  V + 
Sbjct: 284 GQVNHVRAEEAQEDQGVLIGMFSINSTPVKVLLDSGASHSFISLEASQQHNLTLVGVRKP 343

Query: 224 MIVTNPLGDVVRTH 237
           MIV +P G+V  +H
Sbjct: 344 MIVHSPGGEVTVSH 357


>Q60CW7_SOLTU (tr|Q60CW7) Gag-pol polyprotein, putative OS=Solanum tuberosum
           GN=STB1_57t00024 PE=4 SV=2
          Length = 401

 Score = 54.7 bits (130), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)

Query: 92  PPCAHCGRRHGGDCWLVTGKCWICGASDHQKKDCPKRAKVPTQFITXXXXXXXXXXXXXX 151
           P CA CG+ H G C   +  C+ C    H  K+CP+  +                     
Sbjct: 192 PTCAKCGKNHPGACRDGSNGCFKCDQEGHFMKECPRNRQGNGNRGNRAQSSSVAPPDRAT 251

Query: 152 XXTVDRPDTRGPARVYAMRAREDEE-APDVIVGEFSLCDHTVYALIDPGSSHSYIS 206
                    +G  R+YA+ +R++++ +PDV+ G   +    VYA ++PG+S S+++
Sbjct: 252 PRGATLGIGKGANRLYAITSRQEQKNSPDVVTGMIKVFTFDVYAFLNPGASLSFVT 307