Jatropha Genome Database

JcCA0206251.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0206251.10 + phase: 0 /TE/partial
         (362 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5NRP3_SOLDE (tr|Q5NRP3) Gag-pol polyprotein, putative OS=Solanu...    58   2e-06

>Q5NRP3_SOLDE (tr|Q5NRP3) Gag-pol polyprotein, putative OS=Solanum demissum
           GN=SDM1_58t00005 PE=4 SV=2
          Length = 1096

 Score = 57.8 bits (138), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 44/65 (67%)

Query: 1   IKIREIQALCKEHLNVYIGKKIARRSKIKALGAIMGDYKVVFARLHDYADEIRTSNLGSA 60
           IK+ EIQ L ++   +Y+G+ +  R+K+  L   MGD+K+ FARL DYAD I+ +N GS+
Sbjct: 415 IKLWEIQELVRKTTGLYVGRTLCYRAKLMILKEFMGDWKMEFARLCDYADMIKQTNPGSS 474

Query: 61  CFAKC 65
           C+ + 
Sbjct: 475 CWVRT 479