Jatropha Genome Database

JcCA0165421.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0165421.10 + phase: 0 
         (72 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RYW0_RICCO (tr|B9RYW0) Ubiquitin carboxyl-terminal hydrolase O...    98   2e-19
B9I0S6_POPTR (tr|B9I0S6) Ubiquitin carboxyl-terminal hydrolase O...    83   1e-14
B9GIT5_POPTR (tr|B9GIT5) Ubiquitin carboxyl-terminal hydrolase O...    82   2e-14
D7TVT0_VITVI (tr|D7TVT0) Whole genome shotgun sequence of line P...    72   1e-11
B9DFI6_ARATH (tr|B9DFI6) Ubiquitin carboxyl-terminal hydrolase O...    68   4e-10
D7LYQ3_ARALY (tr|D7LYQ3) Ubiquitin carboxyl-terminal hydrolase f...    65   2e-09
D7KID0_ARALY (tr|D7KID0) Ubiquitin carboxyl-terminal hydrolase f...    62   3e-08

>B9RYW0_RICCO (tr|B9RYW0) Ubiquitin carboxyl-terminal hydrolase OS=Ricinus
          communis GN=RCOM_1314030 PE=3 SV=1
          Length = 938

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/54 (83%), Positives = 50/54 (92%), Gaps = 1/54 (1%)

Query: 1  MTIADSGCLMENG-GSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MT+ADS CLMENG  SCLPCTP EE+QIVKEL++EAELDLKEGNLYYVVSAR+F
Sbjct: 1  MTMADSECLMENGESSCLPCTPHEEQQIVKELMNEAELDLKEGNLYYVVSARWF 54


>B9I0S6_POPTR (tr|B9I0S6) Ubiquitin carboxyl-terminal hydrolase OS=Populus
          trichocarpa GN=POPTRDRAFT_834165 PE=3 SV=1
          Length = 942

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 48/63 (76%), Gaps = 10/63 (15%)

Query: 1  MTIADSGCLMENGG----------SCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSA 50
          MT+ DS CLMENGG          SCLPCTPEEEKQIV+EL  EAE DLKEGNLY+VVS+
Sbjct: 1  MTMIDSRCLMENGGGGGGGGGGEGSCLPCTPEEEKQIVEELNREAERDLKEGNLYFVVSS 60

Query: 51 RYF 53
          R+F
Sbjct: 61 RWF 63


>B9GIT5_POPTR (tr|B9GIT5) Ubiquitin carboxyl-terminal hydrolase OS=Populus
          trichocarpa GN=POPTRDRAFT_798230 PE=3 SV=1
          Length = 933

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 47/59 (79%), Gaps = 6/59 (10%)

Query: 1  MTIADSGCLMENGG------SCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MT+ DS CLMENGG      SCL CTPEEEKQIV+EL  EAE DLKEGNLY+VVS+R+F
Sbjct: 1  MTMIDSSCLMENGGGGGGGGSCLTCTPEEEKQIVEELSREAERDLKEGNLYFVVSSRWF 59


>D7TVT0_VITVI (tr|D7TVT0) Whole genome shotgun sequence of line PN40024,
          scaffold_25.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00019677001 PE=4 SV=1
          Length = 944

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 39/44 (88%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNL 44
          MTIADSG +MENGGSCLP TPE+EKQIV +L++++E  LKEGNL
Sbjct: 1  MTIADSGFMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNL 44


>B9DFI6_ARATH (tr|B9DFI6) Ubiquitin carboxyl-terminal hydrolase OS=Arabidopsis
          thaliana GN=At4g10590 PE=2 SV=1
          Length = 910

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 41/53 (77%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI +S  ++ENG    P TPEEEK+IV ELI E+E +LKEGNLY+V+S R++
Sbjct: 1  MTIPNSDFMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWY 53


>D7LYQ3_ARALY (tr|D7LYQ3) Ubiquitin carboxyl-terminal hydrolase family protein
          OS=Arabidopsis lyrata subsp. lyrata
          GN=ARALYDRAFT_352131 PE=4 SV=1
          Length = 913

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 40/53 (75%)

Query: 1  MTIADSGCLMENGGSCLPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI +S  ++ENG    P TP EEK+IV ELI E+E +LKEGNLY+V+S R++
Sbjct: 1  MTIPNSDFMIENGVCDFPTTPAEEKRIVSELITESEDNLKEGNLYFVISKRWY 53


>D7KID0_ARALY (tr|D7KID0) Ubiquitin carboxyl-terminal hydrolase family protein
          OS=Arabidopsis lyrata subsp. lyrata
          GN=ARALYDRAFT_473468 PE=4 SV=1
          Length = 894

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/54 (57%), Positives = 41/54 (75%), Gaps = 5/54 (9%)

Query: 1  MTIADSGCLMENGGSC-LPCTPEEEKQIVKELIDEAELDLKEGNLYYVVSARYF 53
          MTI DS    E+ G C +P +PEEE++IV EL +EAE DLKEGNLY+V+S R++
Sbjct: 1  MTIPDS----ESTGVCEVPYSPEEERRIVTELNNEAEADLKEGNLYFVISNRWY 50