Jatropha Genome Database

JcCA0154411.40
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0154411.40 - phase: 2 /pseudo/partial
         (123 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0P2P6_MAIZE (tr|C0P2P6) Putative uncharacterized protein OS=Zea...    69   1e-10

>C0P2P6_MAIZE (tr|C0P2P6) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
          Length = 154

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 36/44 (81%)

Query: 80  PVGGKIFLTKMNIAFSALSFILFRTTXTNWPTVRSAGTRYLYTI 123
           PVGG++F TKM IAFSALS I FRTT TN PTVRSAGTRYL  I
Sbjct: 84  PVGGRVFFTKMKIAFSALSLIRFRTTYTNCPTVRSAGTRYLQAI 127