Jatropha Genome Database
- JcCA0152621.20
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0152621.20 + phase: 1 /TE
(271 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demiss... 132 6e-29
Q6L4A6_SOLDE (tr|Q6L4A6) Putative reverse transcriptase, identic... 112 6e-23
Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=... 111 7e-23
C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRT... 102 4e-20
A2Q3E4_MEDTR (tr|A2Q3E4) RNA-directed DNA polymerase ; HMG-I and... 102 4e-20
C4JB60_MAIZE (tr|C4JB60) Putative uncharacterized protein OS=Zea... 102 5e-20
A2Q5Q3_MEDTR (tr|A2Q5Q3) Putative uncharacterized protein OS=Med... 95 1e-17
Q2HVM1_MEDTR (tr|Q2HVM1) RNA-directed DNA polymerase (Reverse tr... 93 4e-17
A2Q4K6_MEDTR (tr|A2Q4K6) Polyprotein, putative OS=Medicago trunc... 92 4e-17
D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=B... 89 6e-16
A2Q4T8_MEDTR (tr|A2Q4T8) Polyprotein, putative OS=Medicago trunc... 82 5e-14
Q2HTS6_MEDTR (tr|Q2HTS6) RNA-directed DNA polymerase ; HMG-I and... 67 2e-09
C0L2V9_ARAHY (tr|C0L2V9) Putative reverse transcriptase OS=Arach... 60 3e-07
Q6L3P1_SOLDE (tr|Q6L3P1) Putative methyltransferase family prote... 58 1e-06
>Q6L4B3_SOLDE (tr|Q6L4B3) Polyprotein, putative OS=Solanum demissum
GN=SDM1_19t00015 PE=4 SV=2
Length = 868
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 107/164 (65%), Gaps = 12/164 (7%)
Query: 103 GLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIALH 162
G ID+DV+HR+ WMKWR A+ VLCDKKIS K+KGKFY+ VV PA+LYG+ECW + H
Sbjct: 516 GDIDDDVTHRVGAAWMKWRLASGVLCDKKISPKLKGKFYRVVVRPALLYGAECWPVKNAH 575
Query: 163 ----HANSEMDVT-----DTRLDKIKNDHIRQ-VRV-EVGDKMREGYLRCYSHVLCRRSH 211
H +EM + TR DKI+N+ IR+ V V V DK+RE LR + HV R +
Sbjct: 576 VHKMHV-AEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSAD 634
Query: 212 ALIRKCNTLAMEGAKKERDQPRNA*KQILVKDF*SLNISEDI*L 255
A +R+C + +EG ++ R +P+ ++++ +D L+I+ED+ L
Sbjct: 635 APVRRCEVMVVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMTL 678
>Q6L4A6_SOLDE (tr|Q6L4A6) Putative reverse transcriptase, identical OS=Solanum
demissum GN=SDM1_19t00011 PE=4 SV=1
Length = 213
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 87/141 (61%), Gaps = 10/141 (7%)
Query: 99 VSEGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWAL 158
+ G ID+DV+HR+ WMKWR A+ VLCDKKI K+KGKFY+ VV PA+LYG+ECW +
Sbjct: 44 IQGSGDIDDDVTHRVGAAWMKWRLASGVLCDKKIPLKLKGKFYRVVVRPALLYGAECWPV 103
Query: 159 IALHHAN---SEMDVT-----DTRLDKIKNDHIRQ-VRV-EVGDKMREGYLRCYSHVLCR 208
H +EM + TR DKI+N+ IR+ V V V DK+RE LR + HV R
Sbjct: 104 KNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRR 163
Query: 209 RSHALIRKCNTLAMEGAKKER 229
+ A +R+C + +E + R
Sbjct: 164 SADAPVRRCEVMVVEASLPPR 184
>Q1AKH8_SOYBN (tr|Q1AKH8) Reverse transcriptase family member OS=Glycine max PE=4
SV=1
Length = 377
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 12/157 (7%)
Query: 99 VSEGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWAL 158
+ + G I+ DV+HRI GWMKWR A+ VLCD K+ K+KGKFY+T V P +LYG+ECWA+
Sbjct: 196 IQDDGEIEGDVNHRIQAGWMKWRKASGVLCDAKVPIKLKGKFYRTAVRPTILYGTECWAV 255
Query: 159 IALHH---ANSEMDVT-----DTRLDKIKNDHIRQVRVEVG---DKMREGYLRCYSHVLC 207
+ H +EM + TR DKI+N+ IR+ RV V +KM E LR + HV
Sbjct: 256 KSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRE-RVGVAPIVEKMVENRLRWFGHVER 314
Query: 208 RRSHALIRKCNTLAMEGAKKERDQPRNA*KQILVKDF 244
R +++R+ + + + R +P+ ++++ KD
Sbjct: 315 RPVDSVLRRVDQMERRQTIRGRGRPKKTIREVIKKDL 351
>C6Y4D5_9NEOP (tr|C6Y4D5) Endonuclease-reverse transcriptase HmRTE-e01
OS=Heliconius melpomene GN=HM01045 PE=4 SV=1
Length = 990
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 88/157 (56%), Gaps = 17/157 (10%)
Query: 101 EGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIA 160
E G ID DV RI W KWR T V+CD++I K+KG YK++V P +LYGSECW ++
Sbjct: 808 ESGGIDHDVHGRISAAWAKWREVTGVVCDRRIPPKLKGLIYKSIVRPVLLYGSECWPALS 867
Query: 161 LHHANSEMDVTD----------TRLDKIKNDHIR---QVRVEVGDKMREGYLRCYSHVLC 207
H E+ VT+ TR D+I+N IR VR +V DK++E LR + HV
Sbjct: 868 RH--TQELHVTEMKMLRWMCGVTRSDRIRNTFIRGSLGVR-DVADKLQERRLRWFGHVTR 924
Query: 208 RRSHALIRKCNTLAMEGAKKERDQPRNA*KQILVKDF 244
R + + RKC + + GA+ +PR ++++D
Sbjct: 925 RPKNYVGRKCLAILVPGARPP-GRPRKRWLDVVMQDM 960
>A2Q3E4_MEDTR (tr|A2Q3E4) RNA-directed DNA polymerase ; HMG-I and HMG-Y,
DNA-binding, putative OS=Medicago truncatula
GN=MtrDRAFT_AC155881g8v1 PE=4 SV=1
Length = 195
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 68/100 (68%), Gaps = 12/100 (12%)
Query: 98 YVSEGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWA 157
+V G I+ DVSHRI GW+KWR A+ VLCDKK+ K+KGKFY+T + PA+LYG+ECWA
Sbjct: 87 FVQNDGEIEADVSHRIQAGWLKWRRASGVLCDKKVPLKLKGKFYRTAIRPALLYGTECWA 146
Query: 158 LIALHHANSEMDVTD----------TRLDKIKNDHIRQVR 187
+ + H +++ VT+ TR D+I+ND IR+ R
Sbjct: 147 VKSQHE--NQVSVTEMRMLRWMSGKTRQDRIRNDTIREGR 184
>C4JB60_MAIZE (tr|C4JB60) Putative uncharacterized protein OS=Zea mays PE=2 SV=1
Length = 215
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 99 VSEGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWAL 158
+ + G IDEDVSHRI GW+KWR A VLCD ++ +K+KGKFY+T + PAMLYG+ECW
Sbjct: 35 LQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYRTAIRPAMLYGAECWPT 94
Query: 159 IALHHAN---SEMDVT-----DTRLDKIKNDHIRQVRVEVG---DKMREGYLRCYSHVLC 207
H +EM + TR D+++ND IR+ RV V +K+ + LR + H+
Sbjct: 95 KRRHVQQLCVAEMRMLRWICGHTRRDRVRNDDIRE-RVGVAPIEEKLMQHRLRWFGHIQR 153
Query: 208 RRSHALIRKCNTLAMEGAKKERDQPRNA*KQILVKDF*SLNISEDI 253
R A + E K+ R +P + + +D I +++
Sbjct: 154 RSDEAPVHIGIIRRPENVKRGRGRPTLTWTEAVKRDLKEWKIDKEL 199
>A2Q5Q3_MEDTR (tr|A2Q5Q3) Putative uncharacterized protein OS=Medicago truncatula
GN=MtrDRAFT_AC167711g37v2 PE=4 SV=1
Length = 104
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 8/85 (9%)
Query: 109 VSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIALHH---AN 165
VSHRI VGW+KWR A+SVLCDKK+ K+KGKFY+T V PA+LYG+ECWA+ + H +
Sbjct: 7 VSHRIQVGWLKWRRASSVLCDKKVPLKLKGKFYRTTVRPALLYGTECWAVKSQHENQISV 66
Query: 166 SEMDVT-----DTRLDKIKNDHIRQ 185
+EM + TR D+I+ND IR+
Sbjct: 67 AEMMMLRWMSGKTRQDRIRNDTIRE 91
>Q2HVM1_MEDTR (tr|Q2HVM1) RNA-directed DNA polymerase (Reverse transcriptase)
OS=Medicago truncatula GN=MtrDRAFT_AC148816g39v2 PE=4
SV=2
Length = 517
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%)
Query: 98 YVSEGGLIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWA 157
+V G I+ DVSHRI GW+KWR A+SVLCDKK+ K+ GKFY+T V PA+LYG+ECWA
Sbjct: 449 FVQNDGEIEADVSHRIQAGWLKWRRASSVLCDKKVPLKLTGKFYRTAVRPALLYGTECWA 508
Query: 158 LIALHHANS 166
+ + H +
Sbjct: 509 VKSQHENQT 517
>A2Q4K6_MEDTR (tr|A2Q4K6) Polyprotein, putative OS=Medicago truncatula
GN=MtrDRAFT_AC157502g26v2 PE=4 SV=1
Length = 137
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 70/110 (63%), Gaps = 16/110 (14%)
Query: 109 VSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIALHHANSEM 168
VSH I GW+ WR A+ VLCDKK+ K+KGKFY+T V PA+LYG+ECWA+ + H +++
Sbjct: 26 VSHHIQAGWLNWRRASGVLCDKKVPLKLKGKFYRTAVRPALLYGTECWAVKSQH--ENQV 83
Query: 169 DVTD----------TRLDKIKNDHIRQVRVEVG---DKMREGYLRCYSHV 205
V + TR D+I+ND IR+ RV V +K+ E LR + HV
Sbjct: 84 SVVEMRMLRWMSGKTRHDRIRNDTIRE-RVGVAPIVEKLVENRLRWFGHV 132
>D7F169_BOMMO (tr|D7F169) Endonuclease-reverse transcriptase OS=Bombyx mori PE=4
SV=1
Length = 996
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 13/156 (8%)
Query: 108 DVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIA--LHHAN 165
++ HRI W+KWR + V CD+++ K+KG YKT++ P ++YGSE WA +H
Sbjct: 820 NIQHRIAAAWLKWREVSGVTCDRRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQ 879
Query: 166 -SEMDVTD-----TRLDKIKNDHIR---QVRVEVGDKMREGYLRCYSHVLCRRSHALIRK 216
+EM + TRLDKI+N+++R VR ++ DKM+E LR Y HV ++ +
Sbjct: 880 VAEMKMLRWMCGVTRLDKIRNEYVRGSLGVR-DIADKMQESRLRWYGHVKRKQPDYVGNL 938
Query: 217 CNTLAMEGAKKERDQPRNA*KQILVKDF*SLNISED 252
L + G ++ R +P+ + +++KD N++++
Sbjct: 939 ALLLDLPG-RRPRGRPKTRWRDVVLKDKRECNVADE 973
>A2Q4T8_MEDTR (tr|A2Q4T8) Polyprotein, putative OS=Medicago truncatula
GN=MtrDRAFT_AC157891g39v2 PE=4 SV=1
Length = 116
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/51 (68%), Positives = 41/51 (80%)
Query: 105 IDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSEC 155
I DVSHRI GW+KWR A+ VLCDKK+ K+KGKFY+T V PAMLYG+EC
Sbjct: 66 IKADVSHRIQAGWLKWRRASGVLCDKKVPLKLKGKFYRTTVRPAMLYGTEC 116
>Q2HTS6_MEDTR (tr|Q2HTS6) RNA-directed DNA polymerase ; HMG-I and HMG-Y,
DNA-binding, putative OS=Medicago truncatula
GN=MtrDRAFT_AC149801g26v2 PE=4 SV=2
Length = 118
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 8/88 (9%)
Query: 104 LIDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIALHH 163
++ + +RI GW+KWR A+ VLCDKK+ K+KGKFY+T V P +LYG+ECW + + H
Sbjct: 22 IVSQVTRYRIQAGWLKWRRASDVLCDKKVLLKLKGKFYRTTVRPTLLYGTECWTVKSQHE 81
Query: 164 ---ANSEMDVT-----DTRLDKIKNDHI 183
+ +EM + TR D+I+ND I
Sbjct: 82 NQVSVAEMMMLRWMSGKTRHDRIRNDTI 109
>C0L2V9_ARAHY (tr|C0L2V9) Putative reverse transcriptase OS=Arachis hypogaea PE=4
SV=1
Length = 515
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 29/127 (22%)
Query: 105 IDEDVSHRI*VGWMKWRSATSVLCDKKISNKVKGKFYKTVVSPAMLYGSECWALIALHH- 163
I+ DV+HRI GW KWRSA+S +CDK + K+K CW + H
Sbjct: 75 IEHDVNHRIQAGWSKWRSASSFICDKTVPLKLK-----------------CWTVKGEHEH 117
Query: 164 --ANSEMDVT-----DTRLDKIKNDHIRQVRVEVGD---KMREGYLRCYSHVLCRRSHAL 213
+ SEM + +LDKI+N+ IR+ RV V KM E +L + HV R + L
Sbjct: 118 KLSVSEMKMLRWMSGRMQLDKIRNEDIRE-RVGVASIVKKMVESHLWWFGHVRRRPTKHL 176
Query: 214 IRKCNTL 220
+R+ + +
Sbjct: 177 VRRVDEM 183
>Q6L3P1_SOLDE (tr|Q6L3P1) Putative methyltransferase family protein OS=Solanum
demissum GN=SDM1_42t00008 PE=4 SV=2
Length = 828
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 173 TRLDKIKNDHIRQ-VRV-EVGDKMREGYLRCYSHVLCRRSHALIRKCNTLAMEGAKKERD 230
TR DKI+N+ IR+ V V V DK+RE LR + HV R + A +R+C + +EG ++ R
Sbjct: 11 TRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSADAAVRRCEVMVVEGTRRGRG 70
Query: 231 QPRNA*KQILVKDF*SLNISEDI 253
+P+ ++++ +D L+I+ED+
Sbjct: 71 RPKKYWEEVIRQDLAMLHITEDM 93