Jatropha Genome Database

JcCA0149671.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0149671.10 + phase: 0 /pseudo/partial
         (66 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B6TSD8_MAIZE (tr|B6TSD8) Putative uncharacterized protein OS=Zea...    88   4e-16

>B6TSD8_MAIZE (tr|B6TSD8) Putative uncharacterized protein OS=Zea mays PE=4
          SV=1
          Length = 66

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 49/65 (75%)

Query: 2  KSDSDDLPVFFVTTHSYALPS*NKPDTMALNFVTDIVFSNNKYGTKKGKDFGAGRMFKKD 61
          +S SD+ P F VTTHSYALPS N P+ +ALN VTD+VFS ++YG  KG D G GRMF +D
Sbjct: 2  RSPSDERPDFLVTTHSYALPSWNSPEIIALNLVTDMVFSKSRYGMMKGNDLGDGRMFSRD 61

Query: 62 IKMGT 66
          I+ GT
Sbjct: 62 IRAGT 66