Jatropha Genome Database

JcCA0129501.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0129501.10 - phase: 2 /pseudo/partial
         (128 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9R972_RICCO (tr|B9R972) Protein binding protein, putative OS=Ri...    63   1e-08

>B9R972_RICCO (tr|B9R972) Protein binding protein, putative OS=Ricinus communis
           GN=RCOM_1514570 PE=4 SV=1
          Length = 219

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 35/42 (83%)

Query: 87  DMDIPIQPFMIDRILAFARQMAGIKLYLGRKVLHMRVDIDVP 128
           +M++P+Q +M+DRIL FARQMA  K Y  RKVLHM+V+IDVP
Sbjct: 92  EMNVPVQSYMLDRILGFARQMATNKRYKNRKVLHMKVEIDVP 133