Jatropha Genome Database

JcCA0122071.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122071.10 + phase: 0 
         (136 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9T3M7_RICCO (tr|B9T3M7) DNA binding protein, putative OS=Ricinu...   114   3e-24
A9PAN4_POPTR (tr|A9PAN4) Methyl binding domain protein OS=Populu...    70   6e-11
B9HPH2_POPTR (tr|B9HPH2) Methyl binding domain protein OS=Populu...    69   1e-10
Q9LTJ1_ARATH (tr|Q9LTJ1) At5g59380 OS=Arabidopsis thaliana GN=At...    57   7e-07
D7MSE3_ARALY (tr|D7MSE3) Putative uncharacterized protein OS=Ara...    54   8e-06

>B9T3M7_RICCO (tr|B9T3M7) DNA binding protein, putative OS=Ricinus communis
           GN=RCOM_1165760 PE=4 SV=1
          Length = 234

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 84/137 (61%), Gaps = 21/137 (15%)

Query: 1   MSNAIASGQDPDPVSFRTDPHGSGHPDLDTITDPLLQNGSYIDPSNNLPTSGQTTIKPNK 60
           MSN+  +GQ  +P+  R DPH S  PDL    DPLL+NGS+ID          TTIKPN 
Sbjct: 1   MSNSTHTGQATNPIC-RADPHSSDQPDL--AEDPLLRNGSFIDA---------TTIKPNI 48

Query: 61  DNXXXXXXXXXXXNGVEAE--------TPVKSRRKVPVTMAPG-SAESASWLPPGWLVED 111
           DN              EA         TP+KSRRKVPVTMAP  SA+SA+WLPPGWLVED
Sbjct: 49  DNNVSNNNNNNNYQQQEANVGVEQSEATPLKSRRKVPVTMAPAPSADSANWLPPGWLVED 108

Query: 112 RVRTSGATAGTVDKVHF 128
           RVR SGATAGTVDK + 
Sbjct: 109 RVRASGATAGTVDKYYI 125


>A9PAN4_POPTR (tr|A9PAN4) Methyl binding domain protein OS=Populus trichocarpa
           GN=MBD905 PE=2 SV=1
          Length = 214

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 54/96 (56%), Gaps = 18/96 (18%)

Query: 33  DPLLQNGSYIDPSNNLPTSGQTTIKPNKDNXXXXXXXXXXXNGVEAETPVKSRRKVPVTM 92
           DPLLQNGS IDP N   T+ +T  + N                 +  TPV+ +R++  T 
Sbjct: 22  DPLLQNGSSIDP-NKHSTADETLNRTN------------DKGNQQPVTPVREKRRLSET- 67

Query: 93  APGSAESASWLPPGWLVEDRVRTSGATAGTVDKVHF 128
               A   SWLPPGW+VEDRVRTSGATAGT DK + 
Sbjct: 68  ----AVDTSWLPPGWVVEDRVRTSGATAGTRDKYYI 99


>B9HPH2_POPTR (tr|B9HPH2) Methyl binding domain protein OS=Populus trichocarpa
           GN=MBD904 PE=4 SV=1
          Length = 214

 Score = 69.3 bits (168), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 53/96 (55%), Gaps = 18/96 (18%)

Query: 33  DPLLQNGSYIDPSNNLPTSGQTTIKPNKDNXXXXXXXXXXXNGVEAETPVKSRRKVPVTM 92
           D L QNGS IDP N   T+ +T  +PN                 +  TPV+++R+   T 
Sbjct: 22  DALRQNGSVIDP-NTRTTAVETLTRPNNKGNQ------------QPVTPVRAKRRSSETT 68

Query: 93  APGSAESASWLPPGWLVEDRVRTSGATAGTVDKVHF 128
                   SWLPPGW+VEDR+RTSGATAGTVDK + 
Sbjct: 69  I-----ETSWLPPGWVVEDRIRTSGATAGTVDKYYI 99


>Q9LTJ1_ARATH (tr|Q9LTJ1) At5g59380 OS=Arabidopsis thaliana GN=At5g59380 PE=2
           SV=1
          Length = 225

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 33  DPLLQNGSYIDPSNNLPTSGQTTIKPNKDNXXXXXXXXXXXNG-------VEAETPVKSR 85
           DPLL +G++I  + +         +P +              G       V  +T  KSR
Sbjct: 12  DPLLASGAFISSAGDGTLDSSAKRRPIQGGIGISGSGESVRIGMANGTDQVNHQTESKSR 71

Query: 86  RKVPVTMAPGSAESASWLPPGWLVEDRVRTSGATAGTVDKVHF 128
           ++     APG     +WLPPGW VED++RTSGATAG+VDK ++
Sbjct: 72  KRA----APGD----NWLPPGWRVEDKIRTSGATAGSVDKYYY 106


>D7MSE3_ARALY (tr|D7MSE3) Putative uncharacterized protein OS=Arabidopsis lyrata
           subsp. lyrata GN=ARALYDRAFT_919168 PE=4 SV=1
          Length = 233

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%), Gaps = 8/46 (17%)

Query: 83  KSRRKVPVTMAPGSAESASWLPPGWLVEDRVRTSGATAGTVDKVHF 128
           KSR++     APG     +WLPPGW VED++RTSGATAG+VDK ++
Sbjct: 76  KSRKRA----APGD----NWLPPGWRVEDKIRTSGATAGSVDKYYY 113