Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0122021.10 - phase: 0 
         (110 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, puta...   128   3e-28
D7UB90_VITVI (tr|D7UB90) Whole genome shotgun sequence of line P...   117   4e-25
B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarp...   113   8e-24
B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarp...   112   9e-24
Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 OS=Sinapis alba GN=sig2 ...    94   7e-18
Q8GWC1_ARATH (tr|Q8GWC1) Putative plastid RNA polymerase sigma-s...    92   2e-17
O22056_ARATH (tr|O22056) At1g08540 OS=Arabidopsis thaliana GN=SI...    92   2e-17
O22455_ARATH (tr|O22455) Sigma factor 2 OS=Arabidopsis thaliana ...    92   2e-17
D7KIT0_ARALY (tr|D7KIT0) Putative uncharacterized protein OS=Ara...    92   2e-17
Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=si...    84   4e-15

>B9SDA3_RICCO (tr|B9SDA3) RNA polymerase sigma factor rpoD1, putative
          OS=Ricinus communis GN=RCOM_1515490 PE=4 SV=1
          Length = 569

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 72/85 (84%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60
          MSCLLPQFKCQPDTFSIHFR +Y   SN  QS KSREP+ +RAQCILSTTSPSTSTAVLD
Sbjct: 2  MSCLLPQFKCQPDTFSIHFRANYFHFSNVTQSTKSREPIYYRAQCILSTTSPSTSTAVLD 61

Query: 61 LEKLRLPSFEAHPDSLVANSPWTYV 85
          LEKLRLPSFEA  DS+  NSPWTY 
Sbjct: 62 LEKLRLPSFEAPSDSIAPNSPWTYA 86


>D7UB90_VITVI (tr|D7UB90) Whole genome shotgun sequence of line PN40024,
          scaffold_24.assembly12x (Fragment) OS=Vitis vinifera
          GN=VIT_00019326001 PE=4 SV=1
          Length = 575

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 70/97 (72%), Gaps = 11/97 (11%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSP---STSTA 57
          MSCLLPQFKC PDTFS H + H L        +K+RE + FR QC LSTTSP   +++TA
Sbjct: 1  MSCLLPQFKCPPDTFSTHPKLHIL--------SKNREAIYFRVQCALSTTSPPLSTSTTA 52

Query: 58 VLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEV 94
          VLD+EKLRLPS E+H +S+ A+ PWTY+G +GPP E 
Sbjct: 53 VLDIEKLRLPSLESHSNSVAAHRPWTYIGVVGPPTEA 89


>B9I6F1_POPTR (tr|B9I6F1) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_834586 PE=4 SV=1
          Length = 567

 Score =  113 bits (282), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 63/93 (67%), Gaps = 12/93 (12%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60
          MSCLLPQFKCQPDTFS+HFR      +N  Q            QC+LS+ SPST  AVLD
Sbjct: 1  MSCLLPQFKCQPDTFSVHFRNLQHHGTNHTQLP----------QCVLSSASPST--AVLD 48

Query: 61 LEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKE 93
          LEKLRLPS E H DS+ AN PWTY+G IGP K+
Sbjct: 49 LEKLRLPSLEPHSDSISANRPWTYIGGIGPQKK 81


>B9IPZ1_POPTR (tr|B9IPZ1) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_780378 PE=4 SV=1
          Length = 564

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 69/93 (74%), Gaps = 15/93 (16%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLD 60
          MSCLLPQFKCQPD+FSIH        SN        EP CFRAQC LS+ SPSTSTAVL+
Sbjct: 1  MSCLLPQFKCQPDSFSIH--------SNG-------EPFCFRAQCALSSASPSTSTAVLN 45

Query: 61 LEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKE 93
          LEKLRLPS E+H DS+ AN PWTY+G IGPPKE
Sbjct: 46 LEKLRLPSLESHSDSIAANRPWTYIGGIGPPKE 78


>Q9MTH3_SINAL (tr|Q9MTH3) Sigma factor 2 OS=Sinapis alba GN=sig2 PE=2 SV=1
          Length = 575

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 60/94 (63%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLP FKCQPD+FS+HFRT Y        S  S+    F+ QC +ST SP   T+ LD+
Sbjct: 3  SCLLPNFKCQPDSFSVHFRTSY------SVSKHSKGSAFFQPQCAVST-SPPLLTSTLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DS +++ PWTY  +IGP  E +
Sbjct: 56 AKLRLPSFDTDSDSRISDRPWTYTRTIGPSTEAK 89


>Q8GWC1_ARATH (tr|Q8GWC1) Putative plastid RNA polymerase sigma-subunit SIG1
          OS=Arabidopsis thaliana GN=At1g08540/F22O13_2 PE=2 SV=1
          Length = 572

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLPQFKC PD+FSIHFRT      +FC    ++  V F+ QC +ST SP+  T++LD+
Sbjct: 3  SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPALLTSMLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DSL+++  WTY    GP  E +
Sbjct: 56 AKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAK 89


>O22056_ARATH (tr|O22056) At1g08540 OS=Arabidopsis thaliana GN=SIG1 PE=2 SV=2
          Length = 572

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLPQFKC PD+FSIHFRT      +FC    ++  V F+ QC +ST SP+  T++LD+
Sbjct: 3  SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPALLTSMLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DSL+++  WTY    GP  E +
Sbjct: 56 AKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAK 89


>O22455_ARATH (tr|O22455) Sigma factor 2 OS=Arabidopsis thaliana GN=SIG2 PE=2
          SV=1
          Length = 574

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLPQFKC PD+FSIHFRT      +FC    ++  V F+ QC +ST SP+  T++LD+
Sbjct: 3  SCLLPQFKCPPDSFSIHFRT------SFCAPKHNKGSVFFQPQCAVST-SPALLTSMLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DSL+++  WTY    GP  E +
Sbjct: 56 AKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAK 89


>D7KIT0_ARALY (tr|D7KIT0) Putative uncharacterized protein OS=Arabidopsis
          lyrata subsp. lyrata GN=ARALYDRAFT_470915 PE=4 SV=1
          Length = 572

 Score = 91.7 bits (226), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 62/94 (65%), Gaps = 7/94 (7%)

Query: 2  SCLLPQFKCQPDTFSIHFRTHYLQNSNFCQSAKSREPVCFRAQCILSTTSPSTSTAVLDL 61
          SCLLPQFKC PD+FSIHFRT      +FC    ++  V F+ QC +ST SP+  T++LD+
Sbjct: 3  SCLLPQFKCPPDSFSIHFRT------SFCARKHNKGSVFFQPQCAVST-SPALLTSMLDV 55

Query: 62 EKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
           KLRLPSF+   DS +++  WTY  + GP  E +
Sbjct: 56 AKLRLPSFDTDSDSRISDRQWTYTRTDGPSTEAK 89


>Q710C3_SPIOL (tr|Q710C3) Sigma factor OS=Spinacia oleracea GN=sig2 PE=2 SV=2
          Length = 575

 Score = 84.3 bits (207), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 66/99 (66%), Gaps = 4/99 (4%)

Query: 1  MSCLLPQFKCQPDTFSIHFRTH-YLQNSNFCQSAKSREPVCFRAQCILSTTSPSTS---T 56
          M+CLLPQFKCQPDTFSI    H    +S+     ++R+ VCFR QC +ST  P T+   T
Sbjct: 1  MTCLLPQFKCQPDTFSISSVLHPPSASSSATSLLRNRDLVCFRPQCAVSTPPPPTAAAET 60

Query: 57 AVLDLEKLRLPSFEAHPDSLVANSPWTYVGSIGPPKEVR 95
          ++ D+EKLRLP  E++ +SL A +  T++ ++G P EV+
Sbjct: 61 SIFDVEKLRLPYVESNSNSLSAFAQSTFLSTLGSPAEVK 99