Jatropha Genome Database

JcCA0113611.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0113611.10 - phase: 0 /pseudo/partial
         (160 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9P910_POPTR (tr|B9P910) Predicted protein (Fragment) OS=Populus...    55   2e-06
B9P621_POPTR (tr|B9P621) Predicted protein OS=Populus trichocarp...    54   8e-06
B9IPG5_POPTR (tr|B9IPG5) Predicted protein OS=Populus trichocarp...    53   1e-05

>B9P910_POPTR (tr|B9P910) Predicted protein (Fragment) OS=Populus trichocarpa
           GN=POPTRDRAFT_793886 PE=4 SV=1
          Length = 228

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 7/109 (6%)

Query: 1   VIHWSNSTKLRPVSLWKPPNXNSLKWNVDGSSLGKAGKALIGGSAKXXXXXXXXXXXXS- 59
           ++ WSN+   R  ++W PP  NSLKWNVDGSSLGK G + IGG  +              
Sbjct: 67  LLRWSNAHSFRIHNMWSPPMINSLKWNVDGSSLGKPGPSGIGGVLRNHHGHLLGIFSVPV 126

Query: 60  ---RWHKRFIRSRSPSNTXSFGPKLLHFQIKSNLIVESDSSNALAWLSE 105
                +   +R+   +   S    L H Q   +LI+ESDS NA++W+++
Sbjct: 127 GILDSNIAELRAIVKAIELSASNCLFHHQ---HLIIESDSVNAISWMNK 172


>B9P621_POPTR (tr|B9P621) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_591539 PE=4 SV=1
          Length = 356

 Score = 53.5 bits (127), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/43 (58%), Positives = 31/43 (72%)

Query: 1   VIHWSNSTKLRPVSLWKPPNXNSLKWNVDGSSLGKAGKALIGG 43
           ++ W+N  K R V +W PP  NS KWNVDGSSLGK+G + IGG
Sbjct: 195 LLRWTNYKKQRVVVVWSPPITNSFKWNVDGSSLGKSGPSGIGG 237


>B9IPG5_POPTR (tr|B9IPG5) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_780134 PE=4 SV=1
          Length = 229

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 32/46 (69%)

Query: 1   VIHWSNSTKLRPVSLWKPPNXNSLKWNVDGSSLGKAGKALIGGSAK 46
           ++ W+N   LR ++LW PP+  +LKWNVDGSS GK G A IGG  +
Sbjct: 170 LVCWANIKCLRVLTLWNPPDLYTLKWNVDGSSKGKLGPAGIGGVLR 215