Jatropha Genome Database

JcCA0101011.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0101011.20 + phase: 0 /pseudo
         (120 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HIP8_POPTR (tr|B9HIP8) Predicted protein OS=Populus trichocarp...    67   6e-10

>B9HIP8_POPTR (tr|B9HIP8) Predicted protein OS=Populus trichocarpa
          GN=POPTRDRAFT_564398 PE=4 SV=1
          Length = 594

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 6/66 (9%)

Query: 1  MSVSSA-PFLFSIPDKFTP-NSQS----RKPDPAVSLLQLCKNVEELKQAHTVLVKTSLI 54
          MS+SS+ P+L  +P K T  NSQ     RKPD A+SLLQ CKN ++L Q HT+L+KTSLI
Sbjct: 1  MSISSSTPYLSPVPSKTTALNSQQKQHLRKPDHAISLLQNCKNPKDLIQLHTLLIKTSLI 60

Query: 55 GEKHAF 60
           EK+AF
Sbjct: 61 KEKYAF 66