Jatropha Genome Database

JcCA0087501.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0087501.10 + phase: 0 /pseudo/partial
         (147 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A2Q169_MEDTR (tr|A2Q169) Zinc finger, CCHC-type OS=Medicago trun...    76   1e-12
Q2QT44_ORYSJ (tr|Q2QT44) Retrotransposon protein, putative, uncl...    58   4e-07
B9GCT3_ORYSJ (tr|B9GCT3) Putative uncharacterized protein OS=Ory...    57   7e-07
C5WXL6_SORBI (tr|C5WXL6) Putative uncharacterized protein Sb01g0...    56   1e-06
B9SLI2_RICCO (tr|B9SLI2) Putative uncharacterized protein OS=Ric...    56   1e-06
C5Y174_SORBI (tr|C5Y174) Putative uncharacterized protein Sb04g0...    55   3e-06
Q9MFB1_BETVU (tr|Q9MFB1) Orf120 protein OS=Beta vulgaris subsp. ...    55   3e-06
Q5U6B2_BETVU (tr|Q5U6B2) Orf120b protein OS=Beta vulgaris subsp....    54   4e-06
Q8S6P1_ORYSJ (tr|Q8S6P1) Putative reverse transcriptase OS=Oryza...    54   7e-06
B9G5C7_ORYSJ (tr|B9G5C7) Putative uncharacterized protein OS=Ory...    54   7e-06
Q2QQV8_ORYSJ (tr|Q2QQV8) Retrotransposon protein, putative, uncl...    54   7e-06
Q7G3D9_ORYSJ (tr|Q7G3D9) Retrotransposon protein, putative, uncl...    54   7e-06

>A2Q169_MEDTR (tr|A2Q169) Zinc finger, CCHC-type OS=Medicago truncatula
           GN=MtrDRAFT_AC148290g35v2 PE=4 SV=1
          Length = 425

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 50/85 (58%), Gaps = 3/85 (3%)

Query: 36  NEGMAKILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPF-GKSIWIP 94
           +E MAK L   +  F   D       GKF+  R  LDL KPL RGS  KL F GK IW+ 
Sbjct: 134 SEAMAKKLGNILGMFEEMDMKEVNRMGKFLRIRTSLDLTKPLKRGS--KLHFQGKDIWVD 191

Query: 95  FRYEVLPNFCFLDGRCGHTYRSCDD 119
           ++YE LPNFCF+ GR GH  R C+D
Sbjct: 192 YKYERLPNFCFICGRIGHQMRDCED 216


>Q2QT44_ORYSJ (tr|Q2QT44) Retrotransposon protein, putative, unclassified
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g21910 PE=4
           SV=1
          Length = 839

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 35  MNEGMAKILNRKISPFMGWDSDSN-MAXGKFIIFRALLDLEKPLARGSMVKLPFGK-SIW 92
           MN+   K +  ++  F+  +++ +  A G+F+  +  LD+ KPL RG  + +  GK  IW
Sbjct: 6   MNKVTGKAITNEVGEFIQMEAEEDGTAVGQFLHIKIRLDIRKPLMRGVTLCVGEGKKEIW 65

Query: 93  IPFRYEVLPNFCFLDGRCGHTYRSC 117
            P  YE LP+FC+  G  GHT + C
Sbjct: 66  CPLVYEFLPDFCYTCGIIGHTDKVC 90


>B9GCT3_ORYSJ (tr|B9GCT3) Putative uncharacterized protein OS=Oryza sativa subsp.
           japonica GN=OsJ_35851 PE=4 SV=1
          Length = 502

 Score = 57.0 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 35  MNEGMAKILNRKISPFMGWDSDSN-MAXGKFIIFRALLDLEKPLARGSMVKLPFGK-SIW 92
           MN+   K +  ++  F+  +++ +  A G+F+  +  LD+ KPL RG  + +  GK  IW
Sbjct: 6   MNKVTGKAITNEVGEFIQMEAEEDGTAVGQFLHIKIRLDIRKPLMRGVTLCVGEGKKEIW 65

Query: 93  IPFRYEVLPNFCFLDGRCGHTYRSC 117
            P  YE LP+FC+  G  GHT + C
Sbjct: 66  CPLVYEFLPDFCYTCGIIGHTDKVC 90


>C5WXL6_SORBI (tr|C5WXL6) Putative uncharacterized protein Sb01g033270 OS=Sorghum
           bicolor GN=Sb01g033270 PE=4 SV=1
          Length = 542

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 42  ILNRKISPFMGWDS-DSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKS-IWIPFRYEV 99
           +L  +I   +  D+ D   A G F+  +  +D+ KPL RG +++   G+   W P RYE 
Sbjct: 2   VLGNRIGRALAVDTEDDGSAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEY 61

Query: 100 LPNFCFLDGRCGHTYRSCD 118
           LPNFC+  G  GH  + CD
Sbjct: 62  LPNFCYGCGLLGHVEKECD 80


>B9SLI2_RICCO (tr|B9SLI2) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0591280 PE=4 SV=1
          Length = 335

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query: 41  KILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEVL 100
           K +  +I   +  D  S     + +  R  +DL KPL + + + +   K +W+ FRYE L
Sbjct: 10  KAIGARIGTVLDIDDTSMEGLERSVRLRIRIDLRKPLRKRTKIAMGSNKDMWVFFRYERL 69

Query: 101 PNFCFLDGRCGHTYRSCDDYDFGEPYN 127
           P+FC++ G  GH  R CD     + Y+
Sbjct: 70  PSFCYVCGCLGHVMRDCDSRTEDDGYD 96


>C5Y174_SORBI (tr|C5Y174) Putative uncharacterized protein Sb04g017843 (Fragment)
           OS=Sorghum bicolor GN=Sb04g017843 PE=4 SV=1
          Length = 503

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 35  MNEGMAKILNRKISPFMGWDSDSN-MAXGKFIIFRALLDLEKPLARGSMVKLPFG---KS 90
           M     +++   +   +  D+D N  A G+F+  +  LD+ KPL RG  + +  G    +
Sbjct: 53  MTREAGELIGEMVGKVLDVDADENGRAVGEFLRIKVRLDIRKPLMRGVTLDIGDGDHENN 112

Query: 91  IWIPFRYEVLPNFCFLDGRCGHTYRSCDDY 120
            W P  YE LP+FCF+ G  GH  R+C  Y
Sbjct: 113 KWCPLVYEFLPDFCFICGLIGHVDRACPYY 142


>Q9MFB1_BETVU (tr|Q9MFB1) Orf120 protein OS=Beta vulgaris subsp. vulgaris
           GN=orf120 PE=4 SV=1
          Length = 120

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 42  ILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEVLP 101
           ++ +KI  F+  D   +M   K +  R L+D  KPL +   +K+  G+  +   +YE LP
Sbjct: 1   MIGKKIGSFIQLDKWDSMEIDKSLRIRVLIDARKPLTQKIKLKMRGGQEYFAEVKYEKLP 60

Query: 102 NFCFLDGRCGHTYRSCDDYDFGE 124
            FC+  G+ GH  + CD++ FGE
Sbjct: 61  LFCYYCGKLGHGTKDCDEF-FGE 82


>Q5U6B2_BETVU (tr|Q5U6B2) Orf120b protein OS=Beta vulgaris subsp. vulgaris
           GN=orf120b PE=4 SV=1
          Length = 120

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 42  ILNRKISPFMGWDSDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFGKSIWIPFRYEVLP 101
           ++ +KI  F+  D   +M   K +  R L+D  KPL +   +K+  G+  +   +YE LP
Sbjct: 1   MIGKKIGSFIQLDKWDSMEIDKSLRIRVLIDARKPLTQKIKLKMRGGQEDFAEVKYEKLP 60

Query: 102 NFCFLDGRCGHTYRSCDDYDFGE 124
            FC+  G+ GH  + CD++ FGE
Sbjct: 61  LFCYYCGKLGHGTKDCDEF-FGE 82


>Q8S6P1_ORYSJ (tr|Q8S6P1) Putative reverse transcriptase OS=Oryza sativa subsp.
           japonica GN=OSJNBa0073L01.7 PE=4 SV=1
          Length = 1509

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 38  GMAKILNRKISPFMGWD-SDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFG---KSIWI 93
           GMA  + R++  FM  D  +   A G+F+  +  +D+ KPL RG  V L  G   + +W 
Sbjct: 109 GMA--IGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRG--VTLFVGADERPLWC 164

Query: 94  PFRYEVLPNFCFLDGRCGHTYRSCD 118
           P  YE LP+FC++ G  GHT + C+
Sbjct: 165 PLVYEFLPDFCYICGIVGHTEKLCE 189


>B9G5C7_ORYSJ (tr|B9G5C7) Putative uncharacterized protein OS=Oryza sativa subsp.
           japonica GN=OsJ_31232 PE=4 SV=1
          Length = 1594

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 38  GMAKILNRKISPFMGWD-SDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFG---KSIWI 93
           GMA  + R++  FM  D  +   A G+F+  +  +D+ KPL RG  V L  G   + +W 
Sbjct: 112 GMA--IGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRG--VTLFVGADERPLWC 167

Query: 94  PFRYEVLPNFCFLDGRCGHTYRSCD 118
           P  YE LP+FC++ G  GHT + C+
Sbjct: 168 PLVYEFLPDFCYICGIVGHTEKLCE 192


>Q2QQV8_ORYSJ (tr|Q2QQV8) Retrotransposon protein, putative, unclassified
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g29700 PE=4
           SV=1
          Length = 1621

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 38  GMAKILNRKISPFMGWD-SDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFG---KSIWI 93
           GMA  + R++  FM  D  +   A G+F+  +  +D+ KPL RG  V L  G   + +W 
Sbjct: 40  GMA--IGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRG--VTLFVGADERPLWC 95

Query: 94  PFRYEVLPNFCFLDGRCGHTYRSCD 118
           P  YE LP+FC++ G  GHT + C+
Sbjct: 96  PLVYEFLPDFCYICGIVGHTEKLCE 120


>Q7G3D9_ORYSJ (tr|Q7G3D9) Retrotransposon protein, putative, unclassified
           OS=Oryza sativa subsp. japonica GN=LOC_Os10g21850 PE=4
           SV=1
          Length = 1505

 Score = 53.5 bits (127), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 38  GMAKILNRKISPFMGWD-SDSNMAXGKFIIFRALLDLEKPLARGSMVKLPFG---KSIWI 93
           GMA  + R++  FM  D  +   A G+F+  +  +D+ KPL RG  V L  G   + +W 
Sbjct: 105 GMA--IGREVGEFMTMDLEEDGSAVGQFLRIKIRIDIRKPLMRG--VTLFVGADERPLWC 160

Query: 94  PFRYEVLPNFCFLDGRCGHTYRSCD 118
           P  YE LP+FC++ G  GHT + C+
Sbjct: 161 PLVYEFLPDFCYICGIVGHTEKLCE 185