Jatropha Genome Database

JcCA0080721.30
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0080721.30 - phase: 0 /pseudo/partial
         (110 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9IC81_POPTR (tr|B9IC81) Predicted protein OS=Populus trichocarp...    67   6e-10
D7U7R2_VITVI (tr|D7U7R2) Whole genome shotgun sequence of line P...    65   2e-09

>B9IC81_POPTR (tr|B9IC81) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_572190 PE=4 SV=1
          Length = 267

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 1   MGPGDFVSSSTEKDTAVKERAVTESEVANNCRRQ-SALIKKYHSLGMDIKDA 51
           MG GD+VSSSTEKD A KERAVTE +V N+ R Q   L++KY  LGMDI DA
Sbjct: 87  MGLGDYVSSSTEKDVAAKERAVTEWDVTNHGRAQRQELVRKYQQLGMDINDA 138


>D7U7R2_VITVI (tr|D7U7R2) Whole genome shotgun sequence of line PN40024,
           scaffold_48.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00027596001 PE=4 SV=1
          Length = 264

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 1   MGPGDFVSSSTEKDTAVKERAVTESEVANNCRRQ-SALIKKYHSLGMDIKDAT 52
           MG GDFVSS TEKD AV ER VTE EVAN    Q + LI+ Y +LGMD+ DAT
Sbjct: 84  MGFGDFVSSGTEKDAAVMERVVTEWEVANQGGPQKTQLIRHYQALGMDLHDAT 136