Jatropha Genome Database

JcCA0077401.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077401.20 - phase: 1 /pseudo/partial
         (208 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9HDW4_POPTR (tr|B9HDW4) Predicted protein OS=Populus trichocarp...    74   8e-12

>B9HDW4_POPTR (tr|B9HDW4) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_561030 PE=4 SV=1
          Length = 322

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 74/154 (48%), Gaps = 5/154 (3%)

Query: 2   DNKHVEEQNVLDVPKADKVHNDAGTESGK-PSKKKRKLDESRSDGTGQKXXXXXXXXXXX 60
           +NKH EEQ + D P  D    +   E+GK PSK+KRK+D S +DGTG K           
Sbjct: 153 ENKHGEEQKLQDTPNVDSADTNTEIENGKLPSKRKRKVDASGNDGTGNKTKDGAANEVGN 212

Query: 61  XVVQAERTKAEEMESQLKKAKQNGLKDDRVVESGSXXXXXXXXXXXXXXXXXXXXXNPDG 120
              Q ER K++++E+QLKKAK N LKDD+     S                     + DG
Sbjct: 213 GKSQVER-KSDDVETQLKKAKHNALKDDKAT---SPKKEDNKKNIKWRKLVKSALKSNDG 268

Query: 121 XXXXXXXXXXXXXSIQECGITEDESQFSEMLEQK 154
                        S+QE GI +DE++   +LEQK
Sbjct: 269 VLKIRKLKKLVLKSLQESGIAKDETELDNILEQK 302