Jatropha Genome Database

JcCA0071331.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071331.10 + phase: 1 /partial/short
         (36 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9N820_POPTR (tr|B9N820) Predicted protein OS=Populus trichocarp...    63   9e-09
B8YDY4_POPTN (tr|B8YDY4) Starch synthase VI OS=Populus tremula P...    63   9e-09
B2ZGM9_SOLLC (tr|B2ZGM9) Starch synthase VI OS=Solanum lycopersi...    57   5e-07
D7T0L8_VITVI (tr|D7T0L8) Whole genome shotgun sequence of line P...    55   3e-06
B2ZGN0_VITVI (tr|B2ZGN0) Starch synthase VI OS=Vitis vinifera PE...    55   3e-06

>B9N820_POPTR (tr|B9N820) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_1117598 PE=3 SV=1
          Length = 618

 Score = 63.2 bits (152), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 1   PNEWNRIVKKVIETDNSWHKTAGKYIETYDSVRVRS 36
           P+EWN IVKKVIE DNSW+ TAGKYIE Y+SVR RS
Sbjct: 583 PDEWNGIVKKVIEIDNSWNNTAGKYIEVYNSVRGRS 618


>B8YDY4_POPTN (tr|B8YDY4) Starch synthase VI OS=Populus tremula PE=2 SV=1
          Length = 618

 Score = 63.2 bits (152), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 1   PNEWNRIVKKVIETDNSWHKTAGKYIETYDSVRVRS 36
           P+EWN IVKKVIE DNSW+ TAGKYIE Y+SVR RS
Sbjct: 583 PDEWNGIVKKVIEIDNSWNNTAGKYIEVYNSVRGRS 618


>B2ZGM9_SOLLC (tr|B2ZGM9) Starch synthase VI OS=Solanum lycopersicum PE=2 SV=1
          Length = 614

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/35 (65%), Positives = 29/35 (82%)

Query: 1   PNEWNRIVKKVIETDNSWHKTAGKYIETYDSVRVR 35
           PNEW  +V+KV+  DNSW+ TAGKYI+ Y+SVRVR
Sbjct: 580 PNEWKAVVQKVMRIDNSWNNTAGKYIDIYNSVRVR 614


>D7T0L8_VITVI (tr|D7T0L8) Whole genome shotgun sequence of line PN40024,
           scaffold_65.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00032233001 PE=4 SV=1
          Length = 608

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)

Query: 1   PNEWNRIVKKVIETDNSWHKTAGKYIETYDSVRVRS 36
           P EWN  ++KV+E DNSW+ TAGKYI+ Y+SVRVR 
Sbjct: 573 PEEWNTTIQKVMEIDNSWNNTAGKYIDIYNSVRVRC 608


>B2ZGN0_VITVI (tr|B2ZGN0) Starch synthase VI OS=Vitis vinifera PE=2 SV=1
          Length = 608

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 29/36 (80%)

Query: 1   PNEWNRIVKKVIETDNSWHKTAGKYIETYDSVRVRS 36
           P EWN  ++KV+E DNSW+ TAGKYI+ Y+SVRVR 
Sbjct: 573 PEEWNTTIQKVMEIDNSWNNTAGKYIDIYNSVRVRC 608