Jatropha Genome Database

JcCA0070381.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.10 - phase: 0 /pseudo/partial
         (146 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9GQ68_POPTR (tr|B9GQ68) Predicted protein OS=Populus trichocarp...    77   5e-13
B9R8G5_RICCO (tr|B9R8G5) Putative uncharacterized protein OS=Ric...    70   7e-11
B9R8G6_RICCO (tr|B9R8G6) Putative uncharacterized protein OS=Ric...    70   9e-11
B9R8G9_RICCO (tr|B9R8G9) Putative uncharacterized protein OS=Ric...    58   3e-07
C6T8N4_SOYBN (tr|C6T8N4) Putative uncharacterized protein OS=Gly...    57   8e-07

>B9GQ68_POPTR (tr|B9GQ68) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_550823 PE=4 SV=1
          Length = 305

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 63/135 (46%), Gaps = 27/135 (20%)

Query: 2   MSMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPRSXXXXXXXXXXXXXXXXVA 61
           MS WS+LPPELL+ ITQ Q NYVDYL +RAVCKSWRSA+P+                   
Sbjct: 1   MSRWSDLPPELLQLITQKQTNYVDYLCVRAVCKSWRSALPKKPHDLLCQLPWLLLPYQND 60

Query: 62  S----TIFQTA---------------RLTSSNHHXPLKNDVTVLPMVENTPDIFYXIPXQ 102
           S      +  A               R   S+H          L MVE TP IF   P +
Sbjct: 61  SPNHRGFYNLADGKTYRLELPEAYEKRCCGSSH--------GWLVMVEETPAIFLLNPLK 112

Query: 103 KLELSFHRYPPSLIS 117
           K E  F  YPPSLI+
Sbjct: 113 KPESIFLHYPPSLIN 127


>B9R8G5_RICCO (tr|B9R8G5) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1599630 PE=4 SV=1
          Length = 406

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 36/41 (87%)

Query: 2  MSMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          MS WSELP ELL+TITQ Q+NYVDY+S RAVCKSW SAIP+
Sbjct: 1  MSNWSELPQELLQTITQKQSNYVDYISTRAVCKSWWSAIPK 41


>B9R8G6_RICCO (tr|B9R8G6) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1599640 PE=4 SV=1
          Length = 406

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 35/41 (85%)

Query: 2  MSMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          MS WSELP ELL+TITQ Q NYVDY+S RAVCKSW SAIP+
Sbjct: 1  MSSWSELPQELLQTITQKQTNYVDYISTRAVCKSWWSAIPK 41


>B9R8G9_RICCO (tr|B9R8G9) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1599670 PE=4 SV=1
          Length = 402

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 29/40 (72%)

Query: 3  SMWSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          S W+ELPPELL+ I     NYVDYL  RAVC SW+SAI +
Sbjct: 3  STWAELPPELLQVIADKHTNYVDYLVTRAVCGSWQSAIAK 42


>C6T8N4_SOYBN (tr|C6T8N4) Putative uncharacterized protein OS=Glycine max PE=2
          SV=1
          Length = 226

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 5  WSELPPELLRTITQIQANYVDYLSIRAVCKSWRSAIPR 42
          W ELPPELL +I++    YVDYL  R+VC+SWRS++P+
Sbjct: 5  WGELPPELLESISKTLTIYVDYLRFRSVCRSWRSSVPK 42