Jatropha Genome Database

JcCA0067761.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0067761.10 - phase: 0 
         (110 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9GMM6_POPTR (tr|B9GMM6) Predicted protein OS=Populus trichocarp...    55   2e-06

>B9GMM6_POPTR (tr|B9GMM6) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_814902 PE=4 SV=1
          Length = 111

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 52/118 (44%), Gaps = 21/118 (17%)

Query: 1   MEASHKG--KGFLRGXXXXXXXXXXXXXXXXXXFGPTGSMESSAQYRSKVSPSPYTPY-- 56
           MEA H+G  +GF+RG                  F  T       Q  S+VSPSP TP   
Sbjct: 1   MEAKHRGSSQGFVRGNKMVKSL-----------FRVTKPASKQVQSSSRVSPSPCTPNGS 49

Query: 57  SVNFPIXXX------XXXXXXXXXRRSFIDYGEDENVDMKASTFISNVRERFKLVDSE 108
            V+ P                    R F D G DENVDMKA+T+IS VRERF L  +E
Sbjct: 50  EVDSPTRQSYYAYPPSIHKVSITKLRGFPDIGGDENVDMKAATYISYVRERFMLERAE 107