Jatropha Genome Database

JcCA0066091.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066091.20 + phase: 0 /pseudo/partial
         (68 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B4FW25_MAIZE (tr|B4FW25) Putative uncharacterized protein OS=Zea...    64   4e-09

>B4FW25_MAIZE (tr|B4FW25) Putative uncharacterized protein OS=Zea mays PE=4
          SV=1
          Length = 72

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1  PTLGSSSRNGAWHRATTYRGKVSGFCPKAWGLPTFVKIIY 40
          PT GSS RNGAWH ATT+RGKVSGF P+A GLPT VK+I+
Sbjct: 3  PTWGSSRRNGAWHSATTWRGKVSGFWPRACGLPTLVKMIF 42