Jatropha Genome Database

JcCA0062081.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0062081.10 + phase: 0 
         (89 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RKN3_RICCO (tr|B9RKN3) Putative uncharacterized protein OS=Ric...    53   9e-06

>B9RKN3_RICCO (tr|B9RKN3) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_1052200 PE=4 SV=1
          Length = 346

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MGSRDKDQMTSHHQXXXXXXXXXXX-XIXXXXXXXXXXXXXXXYEPGEVHRDPPPYSCQD 59
          MGSRDKDQ TSHHQ                             YEPGEV R+PPPYS  D
Sbjct: 1  MGSRDKDQTTSHHQPLLSSLVVRPSVSDGGDGGAGGRGGGGSDYEPGEVRREPPPYSRSD 60

Query: 60 RYSDDPRWR 68
          RYSDDP +R
Sbjct: 61 RYSDDPGYR 69