Jatropha Genome Database
- JcCA0046101.30
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0046101.30 + phase: 0 /partial
(219 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
B9SL65_RICCO (tr|B9SL65) DNA-directed RNA polymerase OS=Ricinus ... 396 e-109
B9HA70_POPTR (tr|B9HA70) DNA-directed RNA polymerase OS=Populus ... 330 8e-89
D7TI03_VITVI (tr|D7TI03) Whole genome shotgun sequence of line P... 259 1e-67
D7LVV3_ARALY (tr|D7LVV3) Putative uncharacterized protein OS=Ara... 216 2e-54
Q9SVY0_ARATH (tr|Q9SVY0) DNA-directed RNA polymerase OS=Arabidop... 205 2e-51
C5YUX2_SORBI (tr|C5YUX2) DNA-directed RNA polymerase (Fragment) ... 192 2e-47
A5BD07_VITVI (tr|A5BD07) DNA-directed RNA polymerase OS=Vitis vi... 191 3e-47
C0JAC0_ORYCO (tr|C0JAC0) DNA-directed RNA polymerase OS=Oryza co... 187 6e-46
B8B4L0_ORYSI (tr|B8B4L0) DNA-directed RNA polymerase OS=Oryza sa... 180 1e-43
C0JAE8_9ORYZ (tr|C0JAE8) DNA-directed RNA polymerase (Fragment) ... 176 2e-42
Q69X40_ORYSJ (tr|Q69X40) DNA-directed RNA polymerase OS=Oryza sa... 167 9e-40
C0JA57_9ORYZ (tr|C0JA57) DNA-directed RNA polymerase (Fragment) ... 163 1e-38
Q00WA2_OSTTA (tr|Q00WA2) DNA-directed RNA polymerase OS=Ostreoco... 145 2e-33
A4SAV6_OSTLU (tr|A4SAV6) DNA-directed RNA polymerase OS=Ostreoco... 143 1e-32
C1N756_MICPS (tr|C1N756) DNA-directed RNA polymerase OS=Micromon... 139 2e-31
C1EFA8_9CHLO (tr|C1EFA8) DNA-directed RNA polymerase (Fragment) ... 135 2e-30
D7FNY1_ECTSI (tr|D7FNY1) RNA polymerase 1-4 RNA polymerase I lar... 129 2e-28
Q4PB85_USTMA (tr|Q4PB85) DNA-directed RNA polymerase OS=Ustilago... 120 9e-26
D6RMH4_COPC7 (tr|D6RMH4) RNA polymerase I largest subunit OS=Cop... 119 3e-25
D3BS87_POLPA (tr|D3BS87) DNA-directed RNA polymerase OS=Polyspho... 118 4e-25
A0DJB3_PARTE (tr|A0DJB3) DNA-directed RNA polymerase OS=Parameci... 118 4e-25
B0CXW7_LACBS (tr|B0CXW7) DNA-directed RNA polymerase OS=Laccaria... 116 2e-24
D0MYP8_PHYIN (tr|D0MYP8) DNA-directed RNA polymerase OS=Phytopht... 114 6e-24
A8J568_CHLRE (tr|A8J568) DNA-directed RNA polymerase (Fragment) ... 112 2e-23
A6SJ73_BOTFB (tr|A6SJ73) DNA-directed RNA polymerase OS=Botryoti... 111 6e-23
A7EW95_SCLS1 (tr|A7EW95) DNA-directed RNA polymerase OS=Scleroti... 110 8e-23
B2B231_PODAN (tr|B2B231) DNA-directed RNA polymerase OS=Podospor... 110 1e-22
C5MB41_CANTT (tr|C5MB41) DNA-directed RNA polymerase OS=Candida ... 109 2e-22
Q6FV16_CANGA (tr|Q6FV16) DNA-directed RNA polymerase OS=Candida ... 109 2e-22
A7TPJ8_VANPO (tr|A7TPJ8) DNA-directed RNA polymerase OS=Vanderwa... 109 2e-22
Q0U0A2_PHANO (tr|Q0U0A2) DNA-directed RNA polymerase OS=Phaeosph... 109 2e-22
A5DSZ8_LODEL (tr|A5DSZ8) DNA-directed RNA polymerase OS=Lodderom... 109 2e-22
A5DKA8_PICGU (tr|A5DKA8) DNA-directed RNA polymerase OS=Pichia g... 109 2e-22
Q759A3_ASHGO (tr|Q759A3) DNA-directed RNA polymerase OS=Ashbya g... 108 5e-22
B2GUQ2_XENTR (tr|B2GUQ2) DNA-directed RNA polymerase (Fragment) ... 108 6e-22
Q8WZX8_NEUCR (tr|Q8WZX8) DNA-directed RNA polymerase OS=Neurospo... 107 9e-22
A4RCX8_MAGGR (tr|A4RCX8) DNA-directed RNA polymerase OS=Magnapor... 107 1e-21
B6K3G0_SCHJY (tr|B6K3G0) DNA-directed RNA polymerase OS=Schizosa... 106 2e-21
A3LYS3_PICST (tr|A3LYS3) DNA-directed RNA polymerase OS=Pichia s... 106 2e-21
D5G8D7_9PEZI (tr|D5G8D7) DNA-directed RNA polymerase OS=Tuber me... 105 2e-21
B5VSL8_YEAS6 (tr|B5VSL8) DNA-directed RNA polymerase (Fragment) ... 105 2e-21
C8ZH93_YEAS8 (tr|C8ZH93) DNA-directed RNA polymerase OS=Saccharo... 105 3e-21
D1ZA64_SORMA (tr|D1ZA64) DNA-directed RNA polymerase OS=Sordaria... 105 3e-21
C4R1Z5_PICPG (tr|C4R1Z5) DNA-directed RNA polymerase OS=Pichia p... 105 3e-21
D6W336_YEAST (tr|D6W336) A190 OS=Saccharomyces cerevisiae S288c ... 105 3e-21
C7GNS5_YEAS2 (tr|C7GNS5) DNA-directed RNA polymerase OS=Saccharo... 105 3e-21
A6ZPH1_YEAS7 (tr|A6ZPH1) DNA-directed RNA polymerase OS=Saccharo... 105 3e-21
B3LK00_YEAS1 (tr|B3LK00) DNA-directed RNA polymerase OS=Saccharo... 105 3e-21
B9W974_CANDC (tr|B9W974) DNA-directed RNA polymerase OS=Candida ... 105 3e-21
Q59LW3_CANAL (tr|Q59LW3) DNA-directed RNA polymerase OS=Candida ... 105 4e-21
Q6CIX4_KLULA (tr|Q6CIX4) DNA-directed RNA polymerase OS=Kluyvero... 105 4e-21
C3ZBW5_BRAFL (tr|C3ZBW5) DNA-directed RNA polymerase OS=Branchio... 104 8e-21
C5LXY1_9ALVE (tr|C5LXY1) DNA-directed RNA polymerase OS=Perkinsu... 103 1e-20
Q23DD6_TETTH (tr|Q23DD6) DNA-directed RNA polymerase OS=Tetrahym... 103 2e-20
C5KZW7_9ALVE (tr|C5KZW7) DNA-directed RNA polymerase OS=Perkinsu... 102 3e-20
C5KJT2_9ALVE (tr|C5KJT2) DNA-directed RNA polymerase OS=Perkinsu... 102 3e-20
C7YZ78_NECH7 (tr|C7YZ78) DNA-directed RNA polymerase OS=Nectria ... 102 4e-20
Q8BR29_MOUSE (tr|Q8BR29) DNA-directed RNA polymerase OS=Mus musc... 101 4e-20
B5RT96_DEBHA (tr|B5RT96) DNA-directed RNA polymerase OS=Debaryom... 101 6e-20
Q80Y46_MOUSE (tr|Q80Y46) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q8BNM6_MOUSE (tr|Q8BNM6) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q05BP7_MOUSE (tr|Q05BP7) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q3TU49_MOUSE (tr|Q3TU49) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q05DK4_MOUSE (tr|Q05DK4) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q3UHI3_MOUSE (tr|Q3UHI3) DNA-directed RNA polymerase OS=Mus musc... 101 7e-20
Q3TUG2_MOUSE (tr|Q3TUG2) DNA-directed RNA polymerase (Fragment) ... 101 7e-20
Q2GP10_CHAGB (tr|Q2GP10) DNA-directed RNA polymerase OS=Chaetomi... 100 9e-20
C5DV78_ZYGRC (tr|C5DV78) DNA-directed RNA polymerase OS=Zygosacc... 100 9e-20
C5DG15_LACTC (tr|C5DG15) DNA-directed RNA polymerase OS=Lachance... 100 1e-19
C9SE91_VERA1 (tr|C9SE91) DNA-directed RNA polymerase OS=Verticil... 98 6e-19
C5FC46_NANOT (tr|C5FC46) DNA-directed RNA polymerase OS=Nannizzi... 97 1e-18
B2VT60_PYRTR (tr|B2VT60) DNA-directed RNA polymerase OS=Pyrenoph... 97 1e-18
C5KQT5_9ALVE (tr|C5KQT5) DNA-directed RNA polymerase OS=Perkinsu... 97 2e-18
Q7SXQ2_DANRE (tr|Q7SXQ2) DNA-directed RNA polymerase (Fragment) ... 97 2e-18
Q6C1S4_YARLI (tr|Q6C1S4) DNA-directed RNA polymerase OS=Yarrowia... 97 2e-18
Q16K29_AEDAE (tr|Q16K29) DNA-directed RNA polymerase OS=Aedes ae... 96 3e-18
C4V709_NOSCE (tr|C4V709) DNA-directed RNA polymerase OS=Nosema c... 94 7e-18
O17628_CAEEL (tr|O17628) DNA-directed RNA polymerase OS=Caenorha... 94 8e-18
D2A5Z9_TRICA (tr|D2A5Z9) DNA-directed RNA polymerase OS=Triboliu... 94 9e-18
Q5KIF6_CRYNE (tr|Q5KIF6) DNA-directed RNA polymerase OS=Cryptoco... 94 1e-17
Q8UVY7_XENLA (tr|Q8UVY7) DNA-directed RNA polymerase OS=Xenopus ... 94 1e-17
C0S421_PARBP (tr|C0S421) DNA-directed RNA polymerase OS=Paracocc... 94 1e-17
C1FYI4_PARBD (tr|C1FYI4) DNA-directed RNA polymerase OS=Paracocc... 94 1e-17
A1D226_NEOFI (tr|A1D226) DNA-directed RNA polymerase OS=Neosarto... 93 2e-17
B0XRP3_ASPFC (tr|B0XRP3) DNA-directed RNA polymerase OS=Aspergil... 93 2e-17
Q4WS60_ASPFU (tr|Q4WS60) DNA-directed RNA polymerase OS=Aspergil... 93 2e-17
B3S2I6_TRIAD (tr|B3S2I6) DNA-directed RNA polymerase OS=Trichopl... 93 2e-17
C1GUK2_PARBA (tr|C1GUK2) DNA-directed RNA polymerase OS=Paracocc... 92 3e-17
Q8C2X2_MOUSE (tr|Q8C2X2) DNA-directed RNA polymerase OS=Mus musc... 92 3e-17
B7S4C1_PHATR (tr|B7S4C1) DNA-directed RNA polymerase OS=Phaeodac... 92 4e-17
Q8SS15_ENCCU (tr|Q8SS15) DNA-directed RNA polymerase OS=Encephal... 92 4e-17
A6R8S3_AJECN (tr|A6R8S3) DNA-directed RNA polymerase OS=Ajellomy... 92 5e-17
C0NL49_AJECG (tr|C0NL49) DNA-directed RNA polymerase OS=Ajellomy... 92 5e-17
B0E6R8_ENTDI (tr|B0E6R8) DNA-directed RNA polymerase OS=Entamoeb... 92 5e-17
C6HCI4_AJECH (tr|C6HCI4) DNA-directed RNA polymerase OS=Ajellomy... 92 5e-17
B6YT16_THEON (tr|B6YT16) Subunit A' of DNA-dependent RNA polymer... 91 7e-17
A1CP71_ASPCL (tr|A1CP71) DNA-directed RNA polymerase OS=Aspergil... 91 7e-17
D0KRS2_SULS9 (tr|D0KRS2) DNA-directed RNA polymerase subunit A' ... 91 8e-17
C5PA97_COCP7 (tr|C5PA97) DNA-directed RNA polymerase OS=Coccidio... 91 9e-17
A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase, subunit A'... 91 1e-16
A9A460_NITMS (tr|A9A460) DNA-directed RNA polymerase subunit A' ... 91 1e-16
C5JKG0_AJEDS (tr|C5JKG0) DNA-directed RNA polymerase OS=Ajellomy... 91 1e-16
C5G7Q4_AJEDR (tr|C5G7Q4) DNA-directed RNA polymerase OS=Ajellomy... 91 1e-16
B5IVZ9_9EURY (tr|B5IVZ9) DNA-directed RNA polymerase subunit A' ... 91 1e-16
A9UY22_MONBE (tr|A9UY22) DNA-directed RNA polymerase (Fragment) ... 90 1e-16
Q5JE33_PYRKO (tr|Q5JE33) DNA-directed RNA polymerase, subunit A'... 90 2e-16
Q9V114_PYRAB (tr|Q9V114) RpoA1 DNA-directed RNA polymerase, subu... 89 2e-16
O59227_PYRHO (tr|O59227) 907aa long hypothetical DNA-directed RN... 89 2e-16
C4JYF5_UNCRE (tr|C4JYF5) DNA-directed RNA polymerase OS=Uncinoca... 89 3e-16
B4HRE8_DROSE (tr|B4HRE8) DNA-directed RNA polymerase OS=Drosophi... 89 3e-16
B4QFV8_DROSI (tr|B4QFV8) DNA-directed RNA polymerase OS=Drosophi... 89 3e-16
B4MRK4_DROWI (tr|B4MRK4) DNA-directed RNA polymerase OS=Drosophi... 89 4e-16
D2PDL6_SULID (tr|D2PDL6) DNA-directed RNA polymerase subunit A' ... 89 5e-16
B7P2L8_IXOSC (tr|B7P2L8) DNA-directed RNA polymerase (Fragment) ... 88 5e-16
B4P775_DROYA (tr|B4P775) DNA-directed RNA polymerase OS=Drosophi... 88 7e-16
A0RXW9_CENSY (tr|A0RXW9) DNA-directed RNA polymerase, beta' subu... 88 7e-16
C4KIV8_SULIK (tr|C4KIV8) DNA-directed RNA polymerase subunit A' ... 88 7e-16
C3MZM8_SULIA (tr|C3MZM8) DNA-directed RNA polymerase subunit A' ... 88 7e-16
C3MY99_SULIM (tr|C3MY99) DNA-directed RNA polymerase subunit A' ... 88 7e-16
B8YB53_SULSH (tr|B8YB53) RNA polymerase subunit 1N OS=Sulfolobus... 88 7e-16
B3NR27_DROER (tr|B3NR27) DNA-directed RNA polymerase OS=Drosophi... 88 7e-16
C3NFS3_SULIN (tr|C3NFS3) DNA-directed RNA polymerase subunit A' ... 87 8e-16
C3N7Q0_SULIY (tr|C3N7Q0) DNA-directed RNA polymerase subunit A' ... 87 8e-16
C3MRK3_SULIL (tr|C3MRK3) DNA-directed RNA polymerase subunit A' ... 87 8e-16
C5A208_THEGJ (tr|C5A208) DNA-directed RNA polymerase subunit A' ... 87 9e-16
B7R289_9EURY (tr|B7R289) DNA-directed RNA polymerase subunit A' ... 87 9e-16
Q2UCQ9_ASPOR (tr|Q2UCQ9) DNA-directed RNA polymerase OS=Aspergil... 87 1e-15
B8N4P4_ASPFN (tr|B8N4P4) DNA-directed RNA polymerase OS=Aspergil... 87 1e-15
Q6IUR3_ENTHI (tr|Q6IUR3) DNA-directed RNA polymerase OS=Entamoeb... 87 1e-15
B8C4Z8_THAPS (tr|B8C4Z8) DNA-directed RNA polymerase OS=Thalassi... 87 1e-15
Q8U0M4_PYRFU (tr|Q8U0M4) DNA-directed RNA polymerase subunit a' ... 87 1e-15
Q4SFA8_TETNG (tr|Q4SFA8) DNA-directed RNA polymerase OS=Tetraodo... 87 1e-15
Q5RAX8_PONAB (tr|Q5RAX8) DNA-directed RNA polymerase OS=Pongo ab... 86 2e-15
B4GAV6_DROPE (tr|B4GAV6) DNA-directed RNA polymerase OS=Drosophi... 86 2e-15
Q291D4_DROPS (tr|Q291D4) DNA-directed RNA polymerase OS=Drosophi... 86 3e-15
B9ZVN9_HUMAN (tr|B9ZVN9) DNA-directed RNA polymerase OS=Homo sap... 86 3e-15
B7ZKR9_HUMAN (tr|B7ZKR9) DNA-directed RNA polymerase OS=Homo sap... 86 3e-15
D6W5M0_HUMAN (tr|D6W5M0) Polymerase (RNA) I polypeptide A, 194kD... 86 3e-15
B6HAC6_PENCW (tr|B6HAC6) DNA-directed RNA polymerase OS=Penicill... 86 3e-15
Q6MYA4_ASPFU (tr|Q6MYA4) DNA-directed RNA polymerase OS=Aspergil... 86 3e-15
B0XG16_CULQU (tr|B0XG16) DNA-directed RNA polymerase OS=Culex qu... 86 4e-15
A8Q5K0_BRUMA (tr|A8Q5K0) DNA-directed RNA polymerase OS=Brugia m... 86 4e-15
C9RDK8_METVM (tr|C9RDK8) DNA-directed RNA polymerase subunit A' ... 86 4e-15
C4Q0S7_SCHMA (tr|C4Q0S7) DNA-directed RNA polymerase OS=Schistos... 85 4e-15
D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase subunit A' ... 85 4e-15
B3T303_9ARCH (tr|B3T303) Putative RNA polymerase Rpb1, domain 2 ... 85 5e-15
B3T7L4_9ARCH (tr|B3T7L4) Putative RNA polymerase Rpb1, domain 2 ... 85 5e-15
A2QRS4_ASPNC (tr|A2QRS4) DNA-directed RNA polymerase OS=Aspergil... 85 5e-15
B3MEH6_DROAN (tr|B3MEH6) DNA-directed RNA polymerase OS=Drosophi... 85 6e-15
B0EDI6_ENTDI (tr|B0EDI6) DNA-directed RNA polymerase OS=Entamoeb... 85 7e-15
B4LLN1_DROVI (tr|B4LLN1) DNA-directed RNA polymerase OS=Drosophi... 84 7e-15
A2BN34_HYPBU (tr|A2BN34) DNA-directed RNA polymerase subunit A' ... 84 8e-15
D5VRW3_METIM (tr|D5VRW3) DNA-directed RNA polymerase subunit A' ... 84 9e-15
O28391_ARCFU (tr|O28391) DNA-directed RNA polymerase, subunit A'... 84 1e-14
D3S666_METSF (tr|D3S666) DNA-directed RNA polymerase subunit A' ... 84 1e-14
C4M3E6_ENTHI (tr|C4M3E6) DNA-directed RNA polymerase OS=Entamoeb... 84 1e-14
A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinop... 84 1e-14
B4J684_DROGR (tr|B4J684) DNA-directed RNA polymerase OS=Drosophi... 84 1e-14
A8XYH3_CAEBR (tr|A8XYH3) DNA-directed RNA polymerase OS=Caenorha... 84 1e-14
A8A925_IGNH4 (tr|A8A925) DNA-directed RNA polymerase, subunit A'... 83 2e-14
B4KP10_DROMO (tr|B4KP10) DNA-directed RNA polymerase OS=Drosophi... 83 2e-14
C7P941_METFA (tr|C7P941) DNA-directed RNA polymerase subunit A' ... 83 2e-14
Q976A5_SULTO (tr|Q976A5) 884aa long hypothetical DNA-directed RN... 83 2e-14
Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago... 83 2e-14
Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia... 82 3e-14
A2FYC3_TRIVA (tr|A2FYC3) DNA-directed RNA polymerase OS=Trichomo... 82 3e-14
B6QC93_PENMQ (tr|B6QC93) DNA-directed RNA polymerase OS=Penicill... 82 4e-14
B8M0T3_TALSN (tr|B8M0T3) DNA-directed RNA polymerase OS=Talaromy... 82 4e-14
D3RWR8_FERPA (tr|D3RWR8) DNA-directed RNA polymerase subunit A' ... 82 5e-14
B3T8B1_9ARCH (tr|B3T8B1) Putative RNA polymerase Rpb1, domain 2 ... 82 5e-14
A4RMP1_MAGGR (tr|A4RMP1) DNA-directed RNA polymerase OS=Magnapor... 82 5e-14
Q8TXI8_METKA (tr|Q8TXI8) DNA-directed RNA polymerase largest sub... 82 5e-14
D6GWV8_9EURY (tr|D6GWV8) RNA polymerase Rpb1 domain 1 OS=Candida... 82 5e-14
A2DXG8_TRIVA (tr|A2DXG8) DNA-directed RNA polymerase OS=Trichomo... 81 7e-14
B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria... 81 8e-14
Q7SDN0_NEUCR (tr|Q7SDN0) DNA-directed RNA polymerase OS=Neurospo... 81 9e-14
A3FQH3_CRYPV (tr|A3FQH3) DNA-directed RNA polymerase OS=Cryptosp... 80 1e-13
C7DHC4_9EURY (tr|C7DHC4) RNA polymerase alpha subunit OS=Candida... 80 1e-13
C6LRR9_GIALA (tr|C6LRR9) DNA-directed RNA polymerase OS=Giardia ... 80 1e-13
D2I0I0_AILME (tr|D2I0I0) DNA-directed RNA polymerase (Fragment) ... 80 2e-13
B2AA31_PODAN (tr|B2AA31) DNA-directed RNA polymerase OS=Podospor... 80 2e-13
B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosa... 80 2e-13
D1YXW8_METPS (tr|D1YXW8) DNA-directed RNA polymerase subunit A' ... 80 2e-13
A4YCQ9_METS5 (tr|A4YCQ9) DNA-directed RNA polymerase, subunit A'... 80 2e-13
A9BKN5_9CRYP (tr|A9BKN5) DNA-directed RNA polymerase OS=Cryptoph... 80 2e-13
Q0D0E1_ASPTN (tr|Q0D0E1) DNA-directed RNA polymerase OS=Aspergil... 79 2e-13
A5E6J4_LODEL (tr|A5E6J4) DNA-directed RNA polymerase OS=Lodderom... 79 2e-13
D7DU74_METVO (tr|D7DU74) DNA-directed RNA polymerase subunit A' ... 79 3e-13
Q2NEK4_METST (tr|Q2NEK4) RpoA1 OS=Methanosphaera stadtmanae (str... 79 3e-13
D2EG07_9EURY (tr|D2EG07) RNA polymerase Rpb1 domain 1 OS=Candida... 79 3e-13
B9WN64_CANDC (tr|B9WN64) DNA-directed RNA polymerase OS=Candida ... 79 4e-13
Q8ZYQ8_PYRAE (tr|Q8ZYQ8) DNA-directed RNA polymerase subunit A' ... 79 4e-13
A8B7R7_GIALA (tr|A8B7R7) DNA-directed RNA polymerase OS=Giardia ... 79 4e-13
C4YN85_CANAL (tr|C4YN85) DNA-directed RNA polymerase OS=Candida ... 79 4e-13
Q5ACI7_CANAL (tr|Q5ACI7) DNA-directed RNA polymerase OS=Candida ... 79 5e-13
Q9LVH0_ARATH (tr|Q9LVH0) DNA-directed RNA polymerase OS=Arabidop... 79 5e-13
D5EA57_METMS (tr|D5EA57) DNA-directed RNA polymerase, subunit A'... 78 5e-13
Q6LXI8_METMP (tr|Q6LXI8) RNA polymerase, alpha subunit OS=Methan... 78 6e-13
A1RSE8_PYRIL (tr|A1RSE8) DNA-directed RNA polymerase, subunit A'... 78 6e-13
B6AA07_CRYMR (tr|B6AA07) DNA-directed RNA polymerase OS=Cryptosp... 78 6e-13
B1YC25_THENV (tr|B1YC25) DNA-directed RNA polymerase subunit A' ... 78 6e-13
B9PNT4_TOXGO (tr|B9PNT4) DNA-directed RNA polymerase OS=Toxoplas... 78 7e-13
B9QJU7_TOXGO (tr|B9QJU7) DNA-directed RNA polymerase OS=Toxoplas... 78 7e-13
B6KG86_TOXGO (tr|B6KG86) DNA-directed RNA polymerase OS=Toxoplas... 78 8e-13
A2SSM4_METLZ (tr|A2SSM4) DNA-directed RNA polymerase, subunit A'... 78 8e-13
C7YI77_NECH7 (tr|C7YI77) DNA-directed RNA polymerase OS=Nectria ... 77 8e-13
B5IGJ6_ACIB4 (tr|B5IGJ6) DNA-directed RNA polymerase subunit A' ... 77 9e-13
D3T9X0_ACIB4 (tr|D3T9X0) DNA-directed RNA polymerase subunit A' ... 77 1e-12
A0B558_METTP (tr|A0B558) DNA-directed RNA polymerase, subunit A'... 77 1e-12
Q0W8G9_UNCMA (tr|Q0W8G9) DNA-directed RNA polymerase, subunit A1... 77 1e-12
D1Z499_SORMA (tr|D1Z499) DNA-directed RNA polymerase OS=Sordaria... 77 1e-12
A4FWF6_METM5 (tr|A4FWF6) DNA-directed RNA polymerase, subunit A'... 77 1e-12
A7TPB9_VANPO (tr|A7TPB9) DNA-directed RNA polymerase OS=Vanderwa... 77 1e-12
Q9YAU1_AERPE (tr|Q9YAU1) DNA-directed RNA polymerase subunit A O... 77 1e-12
A9A9V0_METM6 (tr|A9A9V0) DNA-directed RNA polymerase subunit A' ... 77 2e-12
A6VGU9_METM7 (tr|A6VGU9) DNA-directed RNA polymerase subunit A' ... 77 2e-12
D7E757_9EURY (tr|D7E757) DNA-directed RNA polymerase subunit A' ... 77 2e-12
A4WN99_PYRAR (tr|A4WN99) DNA-directed RNA polymerase, subunit A'... 77 2e-12
A6UV50_META3 (tr|A6UV50) DNA-directed RNA polymerase subunit A' ... 77 2e-12
Q2HDK0_CHAGB (tr|Q2HDK0) DNA-directed RNA polymerase OS=Chaetomi... 76 3e-12
A3GID7_PICST (tr|A3GID7) DNA-directed RNA polymerase OS=Pichia s... 76 3e-12
A7EKT1_SCLS1 (tr|A7EKT1) DNA-directed RNA polymerase OS=Scleroti... 76 3e-12
C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Pichia p... 76 3e-12
A3DMP4_STAMF (tr|A3DMP4) DNA-directed RNA polymerase, subunit A'... 75 3e-12
A3MXZ0_PYRCJ (tr|A3MXZ0) DNA-directed RNA polymerase, subunit A'... 75 4e-12
Q5KGG3_CRYNE (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptoco... 75 4e-12
Q4N7L1_THEPA (tr|Q4N7L1) DNA-directed RNA polymerase OS=Theileri... 75 4e-12
D7DAF3_9CREN (tr|D7DAF3) DNA-directed RNA polymerase subunit A' ... 75 4e-12
Q8PUR1_METMA (tr|Q8PUR1) DNA-directed RNA polymerase subunit A' ... 75 5e-12
A4ZQ02_BEABA (tr|A4ZQ02) DNA-directed RNA polymerase (Fragment) ... 75 5e-12
Q6L2F9_PICTO (tr|Q6L2F9) DNA-directed RNA polymerase subunit A' ... 75 5e-12
A6SI63_BOTFB (tr|A6SI63) DNA-directed RNA polymerase OS=Botryoti... 75 6e-12
Q8TRB7_METAC (tr|Q8TRB7) DNA-directed RNA polymerase, subunit A ... 75 6e-12
B0R8D4_HALS3 (tr|B0R8D4) DNA-directed RNA polymerase subunit A' ... 74 7e-12
B8GDV8_METPE (tr|B8GDV8) DNA-directed RNA polymerase subunit A' ... 74 7e-12
A5ULN6_METS3 (tr|A5ULN6) DNA-dependent RNA polymerase, subunit A... 74 8e-12
D2ZPW9_METSM (tr|D2ZPW9) DNA-directed RNA polymerase subunit A O... 74 8e-12
B9AEP6_METSM (tr|B9AEP6) Putative uncharacterized protein OS=Met... 74 8e-12
A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergil... 74 8e-12
Q6CL79_KLULA (tr|Q6CL79) DNA-directed RNA polymerase OS=Kluyvero... 74 9e-12
B5RSM9_DEBHA (tr|B5RSM9) DNA-directed RNA polymerase OS=Debaryom... 74 1e-11
Q464Y7_METBF (tr|Q464Y7) DNA-directed RNA polymerase, subunit A'... 74 1e-11
Q84KP6_CYAME (tr|Q84KP6) DNA-directed RNA polymerase OS=Cyanidio... 74 1e-11
C5E245_LACTC (tr|C5E245) DNA-directed RNA polymerase OS=Lachance... 74 1e-11
Q6FQS9_CANGA (tr|Q6FQS9) DNA-directed RNA polymerase OS=Candida ... 74 1e-11
A7S9X0_NEMVE (tr|A7S9X0) DNA-directed RNA polymerase (Fragment) ... 74 1e-11
A5J2B6_9MICR (tr|A5J2B6) DNA-directed RNA polymerase (Fragment) ... 74 1e-11
O96446_9MICR (tr|O96446) DNA-directed RNA polymerase OS=Vairimor... 74 1e-11
C6A1G0_THESM (tr|C6A1G0) DNA-directed RNA polymerase subunit alp... 74 1e-11
A3CS84_METMJ (tr|A3CS84) DNA-directed RNA polymerase subunit A' ... 73 2e-11
Q1L5X2_9EUKA (tr|Q1L5X2) DNA-directed RNA polymerase (Fragment) ... 73 2e-11
D7MT56_ARALY (tr|D7MT56) Putative uncharacterized protein OS=Ara... 73 2e-11
C7NYI6_HALMD (tr|C7NYI6) DNA-directed RNA polymerase subunit A' ... 73 2e-11
C5FCL2_NANOT (tr|C5FCL2) DNA-directed RNA polymerase OS=Nannizzi... 73 2e-11
B6QAY2_PENMQ (tr|B6QAY2) DNA-directed RNA polymerase OS=Penicill... 73 2e-11
D4D6M6_TRIVH (tr|D4D6M6) DNA-directed RNA polymerase OS=Trichoph... 73 2e-11
D6WRF4_TRICA (tr|D6WRF4) Putative uncharacterized protein OS=Tri... 73 2e-11
C5PAJ4_COCP7 (tr|C5PAJ4) DNA-directed RNA polymerase OS=Coccidio... 73 2e-11
O26397_METTH (tr|O26397) DNA-dependent RNA polymerase, subunit A... 73 2e-11
C0SE75_PARBP (tr|C0SE75) DNA-directed RNA polymerase OS=Paracocc... 72 3e-11
B9PZ91_TOXGO (tr|B9PZ91) DNA-directed RNA polymerase OS=Toxoplas... 72 3e-11
C5K0T9_AJEDS (tr|C5K0T9) DNA-directed RNA polymerase OS=Ajellomy... 72 3e-11
C5GKA7_AJEDR (tr|C5GKA7) DNA-directed RNA polymerase OS=Ajellomy... 72 3e-11
B9QMD7_TOXGO (tr|B9QMD7) DNA-directed RNA polymerase OS=Toxoplas... 72 3e-11
B6KRB8_TOXGO (tr|B6KRB8) DNA-directed RNA polymerase OS=Toxoplas... 72 3e-11
C8Z6G2_YEAS8 (tr|C8Z6G2) DNA-directed RNA polymerase OS=Saccharo... 72 3e-11
C4JY44_UNCRE (tr|C4JY44) DNA-directed RNA polymerase OS=Uncinoca... 72 3e-11
D3SW60_NATMM (tr|D3SW60) DNA-directed RNA polymerase subunit A' ... 72 3e-11
Q6E6G2_ANTLO (tr|Q6E6G2) DNA-directed RNA polymerase (Fragment) ... 72 3e-11
D6VRK8_YEAST (tr|D6VRK8) B220 OS=Saccharomyces cerevisiae S288c ... 72 3e-11
C7GKZ2_YEAS2 (tr|C7GKZ2) DNA-directed RNA polymerase OS=Saccharo... 72 3e-11
A6ZXI7_YEAS7 (tr|A6ZXI7) DNA-directed RNA polymerase OS=Saccharo... 72 3e-11
B3LH31_YEAS1 (tr|B3LH31) DNA-directed RNA polymerase OS=Saccharo... 72 3e-11
Q12WS6_METBU (tr|Q12WS6) DNA-directed RNA polymerase subunit A' ... 72 3e-11
B4MAN9_DROVI (tr|B4MAN9) DNA-directed RNA polymerase OS=Drosophi... 72 4e-11
Q5BF71_EMENI (tr|Q5BF71) DNA-directed RNA polymerase OS=Emericel... 72 4e-11
C8VQG7_EMENI (tr|C8VQG7) DNA-directed RNA polymerase OS=Aspergil... 72 4e-11
Q979F4_THEVO (tr|Q979F4) DNA-directed RNA polymerase A' OS=Therm... 72 4e-11
B7XHV6_ENTBH (tr|B7XHV6) DNA-directed RNA polymerase OS=Enterocy... 72 4e-11
C1GHL1_PARBD (tr|C1GHL1) DNA-directed RNA polymerase OS=Paracocc... 72 4e-11
A6QYA7_AJECN (tr|A6QYA7) DNA-directed RNA polymerase OS=Ajellomy... 72 4e-11
A7I9N6_METB6 (tr|A7I9N6) DNA-directed RNA polymerase subunit A' ... 72 4e-11
A8MAA2_CALMQ (tr|A8MAA2) DNA-directed RNA polymerase subunit A' ... 72 4e-11
Q30BD9_9EUKA (tr|Q30BD9) DNA-directed RNA polymerase OS=Glaucocy... 72 5e-11
D1JEK2_9ARCH (tr|D1JEK2) Probable DNA-directed RNA polymerase, s... 72 5e-11
D5U3G6_THEAM (tr|D5U3G6) DNA-directed RNA polymerase, subunit A'... 71 6e-11
A2QAT7_ASPNC (tr|A2QAT7) DNA-directed RNA polymerase OS=Aspergil... 71 8e-11
Q4UI00_THEAN (tr|Q4UI00) DNA-directed RNA polymerase OS=Theileri... 71 8e-11
Q3IUN2_NATPD (tr|Q3IUN2) DNA-directed RNA polymerase subunit A' ... 71 8e-11
C9SR21_VERA1 (tr|C9SR21) DNA-directed RNA polymerase OS=Verticil... 71 8e-11
Q9XZS1_DROGU (tr|Q9XZS1) DNA-directed RNA polymerase OS=Drosophi... 71 9e-11
D7SKP8_VITVI (tr|D7SKP8) Whole genome shotgun sequence of line P... 71 1e-10
Q9XZU9_DROSU (tr|Q9XZU9) DNA-directed RNA polymerase OS=Drosophi... 71 1e-10
Q9XZS2_DROMD (tr|Q9XZS2) DNA-directed RNA polymerase OS=Drosophi... 71 1e-10
Q29IN2_DROPS (tr|Q29IN2) DNA-directed RNA polymerase OS=Drosophi... 71 1e-10
B4H2R8_DROPE (tr|B4H2R8) DNA-directed RNA polymerase OS=Drosophi... 71 1e-10
Q8I410_PLAF7 (tr|Q8I410) DNA-directed RNA polymerase OS=Plasmodi... 70 1e-10
Q70TE9_DROPS (tr|Q70TE9) DNA-directed RNA polymerase (Fragment) ... 70 1e-10
Q0D054_ASPTN (tr|Q0D054) DNA-directed RNA polymerase OS=Aspergil... 70 1e-10
B4R348_DROSI (tr|B4R348) DNA-directed RNA polymerase OS=Drosophi... 70 1e-10
C7NTX8_HALUD (tr|C7NTX8) DNA-directed RNA polymerase subunit A' ... 70 1e-10
D4GZX6_HALVD (tr|D4GZX6) DNA-directed RNA polymerase subunit A O... 70 1e-10
D2RUW1_HALTV (tr|D2RUW1) DNA-directed RNA polymerase subunit A' ... 70 1e-10
C4VAM1_NOSCE (tr|C4VAM1) DNA-directed RNA polymerase OS=Nosema c... 70 1e-10
B6H9U6_PENCW (tr|B6H9U6) DNA-directed RNA polymerase OS=Penicill... 70 1e-10
B1L739_KORCO (tr|B1L739) DNA-directed RNA polymerase subunit A O... 70 1e-10
B4IK28_DROSE (tr|B4IK28) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B4NDK9_DROWI (tr|B4NDK9) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
D0Z769_DROME (tr|D0Z769) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B8M2Y2_TALSN (tr|B8M2Y2) DNA-directed RNA polymerase OS=Talaromy... 70 2e-10
B3NUC1_DROER (tr|B3NUC1) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B4L732_DROMO (tr|B4L732) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B4PY98_DROYA (tr|B4PY98) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B4JXA6_DROGR (tr|B4JXA6) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
A9UNH9_DROME (tr|A9UNH9) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
B3MQ29_DROAN (tr|B3MQ29) DNA-directed RNA polymerase OS=Drosophi... 70 2e-10
Q2FPK0_METHJ (tr|Q2FPK0) DNA-directed RNA polymerase, subunit A'... 70 2e-10
A7ARZ5_BABBO (tr|A7ARZ5) DNA-directed RNA polymerase OS=Babesia ... 70 2e-10
Q5UZR4_HALMA (tr|Q5UZR4) DNA-directed RNA polymerase subunit A O... 70 2e-10
B3A009_HALJP (tr|B3A009) RNA polymerase subunit A OS=Haloarcula ... 70 2e-10
B8N404_ASPFN (tr|B8N404) DNA-directed RNA polymerase OS=Aspergil... 69 2e-10
Q18EX6_HALWD (tr|Q18EX6) DNA-directed RNA polymerase subunit A' ... 69 2e-10
Q9HGZ5_ASPOR (tr|Q9HGZ5) DNA-directed RNA polymerase OS=Aspergil... 69 2e-10
Q26008_PLAFA (tr|Q26008) DNA-directed RNA polymerase OS=Plasmodi... 69 3e-10
D2VD58_NAEGR (tr|D2VD58) DNA-directed RNA polymerase OS=Naegleri... 69 3e-10
Q74M69_NANEQ (tr|Q74M69) NEQ503 OS=Nanoarchaeum equitans (strain... 69 3e-10
C5YBD9_SORBI (tr|C5YBD9) DNA-directed RNA polymerase OS=Sorghum ... 69 3e-10
B8D6G9_DESK1 (tr|B8D6G9) DNA-directed RNA polymerase subunit A' ... 69 3e-10
Q9AXN0_9RHOD (tr|Q9AXN0) DNA-directed RNA polymerase OS=Glaucosp... 69 3e-10
D3BJK4_POLPA (tr|D3BJK4) DNA-directed RNA polymerase OS=Polyspho... 69 4e-10
A1D1U9_NEOFI (tr|A1D1U9) DNA-directed RNA polymerase OS=Neosarto... 69 5e-10
A8PU11_BRUMA (tr|A8PU11) DNA-directed RNA polymerase OS=Brugia m... 69 5e-10
Q4WRY3_ASPFU (tr|Q4WRY3) DNA-directed RNA polymerase OS=Aspergil... 69 5e-10
B0XMU6_ASPFC (tr|B0XMU6) DNA-directed RNA polymerase OS=Aspergil... 69 5e-10
C5DXL0_ZYGRC (tr|C5DXL0) DNA-directed RNA polymerase OS=Zygosacc... 68 7e-10
A9CTM9_ENTBH (tr|A9CTM9) DNA-directed RNA polymerase OS=Enterocy... 68 8e-10
C1H3Q4_PARBA (tr|C1H3Q4) DNA-directed RNA polymerase OS=Paracocc... 67 1e-09
A9CTJ8_ENTBH (tr|A9CTJ8) DNA-directed RNA polymerase OS=Enterocy... 67 1e-09
B0XAQ9_CULQU (tr|B0XAQ9) DNA-directed RNA polymerase OS=Culex qu... 67 2e-09
A8QBY2_MALGO (tr|A8QBY2) DNA-directed RNA polymerase OS=Malassez... 67 2e-09
Q4SXE4_TETNG (tr|Q4SXE4) DNA-directed RNA polymerase (Fragment) ... 67 2e-09
C5LSN9_9ALVE (tr|C5LSN9) DNA-directed RNA polymerase OS=Perkinsu... 67 2e-09
A9U396_PHYPA (tr|A9U396) DNA-directed RNA polymerase OS=Physcomi... 66 2e-09
Q7Q3C6_ANOGA (tr|Q7Q3C6) DNA-directed RNA polymerase (Fragment) ... 66 2e-09
Q3TC95_MOUSE (tr|Q3TC95) DNA-directed RNA polymerase (Fragment) ... 66 2e-09
O96452_ANTLO (tr|O96452) DNA-directed RNA polymerase OS=Antonosp... 66 2e-09
A7S8F9_NEMVE (tr|A7S8F9) DNA-directed RNA polymerase OS=Nematost... 66 3e-09
C1V769_9EURY (tr|C1V769) DNA-directed RNA polymerase, subunit A'... 66 3e-09
B7PJA3_IXOSC (tr|B7PJA3) DNA-directed RNA polymerase (Fragment) ... 66 3e-09
B2W4S0_PYRTR (tr|B2W4S0) DNA-directed RNA polymerase OS=Pyrenoph... 65 4e-09
C6HNU5_AJECH (tr|C6HNU5) DNA-directed RNA polymerase OS=Ajellomy... 65 4e-09
Q6NX41_HUMAN (tr|Q6NX41) DNA-directed RNA polymerase OS=Homo sap... 65 4e-09
D3ZGF8_RAT (tr|D3ZGF8) DNA-directed RNA polymerase OS=Rattus nor... 65 5e-09
D4A5A6_RAT (tr|D4A5A6) DNA-directed RNA polymerase OS=Rattus nor... 65 5e-09
D2HPW2_AILME (tr|D2HPW2) DNA-directed RNA polymerase (Fragment) ... 65 5e-09
Q76M93_CRIGR (tr|Q76M93) DNA-directed RNA polymerase OS=Cricetul... 65 5e-09
O35559_CRIGR (tr|O35559) DNA-directed RNA polymerase OS=Cricetul... 65 5e-09
O08847_MOUSE (tr|O08847) DNA-directed RNA polymerase OS=Mus musc... 65 5e-09
D3ZMS6_RAT (tr|D3ZMS6) DNA-directed RNA polymerase OS=Rattus nor... 65 5e-09
D3DZI7_METRM (tr|D3DZI7) DNA-directed RNA polymerase subunit A' ... 65 6e-09
Q7X881_ORYSJ (tr|Q7X881) DNA-directed RNA polymerase OS=Oryza sa... 65 6e-09
Q01IA5_ORYSA (tr|Q01IA5) DNA-directed RNA polymerase OS=Oryza sa... 65 6e-09
B8AVV8_ORYSI (tr|B8AVV8) DNA-directed RNA polymerase OS=Oryza sa... 65 6e-09
B9FFW1_ORYSJ (tr|B9FFW1) DNA-directed RNA polymerase OS=Oryza sa... 65 7e-09
B9Q7R3_TOXGO (tr|B9Q7R3) DNA-directed RNA polymerase OS=Toxoplas... 65 7e-09
B9PMD7_TOXGO (tr|B9PMD7) DNA-directed RNA polymerase OS=Toxoplas... 65 7e-09
B6KEC6_TOXGO (tr|B6KEC6) DNA-directed RNA polymerase OS=Toxoplas... 65 7e-09
A5CB27_VITVI (tr|A5CB27) DNA-directed RNA polymerase OS=Vitis vi... 64 9e-09
C5LQF1_9ALVE (tr|C5LQF1) DNA-directed RNA polymerase OS=Perkinsu... 64 9e-09
Q4XTG1_PLACH (tr|Q4XTG1) DNA-directed RNA polymerase (Fragment) ... 64 1e-08
B3RM26_TRIAD (tr|B3RM26) DNA-directed RNA polymerase OS=Trichopl... 64 1e-08
B9LQV9_HALLT (tr|B9LQV9) DNA-directed RNA polymerase subunit A' ... 64 1e-08
Q5CH45_CRYHO (tr|Q5CH45) DNA-directed RNA polymerase OS=Cryptosp... 64 1e-08
Q8IE49_PLAF7 (tr|Q8IE49) DNA-directed RNA polymerase OS=Plasmodi... 64 1e-08
B4JN80_DROGR (tr|B4JN80) DNA-directed RNA polymerase OS=Drosophi... 64 1e-08
A2DEX5_TRIVA (tr|A2DEX5) DNA-directed RNA polymerase OS=Trichomo... 64 1e-08
Q5CUJ2_CRYPV (tr|Q5CUJ2) DNA-directed RNA polymerase (Fragment) ... 64 1e-08
Q9AW39_GUITH (tr|Q9AW39) DNA-directed RNA polymerase OS=Guillard... 64 2e-08
B0DK21_LACBS (tr|B0DK21) DNA-directed RNA polymerase OS=Laccaria... 64 2e-08
B9GIK9_POPTR (tr|B9GIK9) DNA-directed RNA polymerase OS=Populus ... 64 2e-08
B4MAW8_DROVI (tr|B4MAW8) DNA-directed RNA polymerase OS=Drosophi... 63 2e-08
C5YGY9_SORBI (tr|C5YGY9) DNA-directed RNA polymerase OS=Sorghum ... 63 2e-08
C3ZES3_BRAFL (tr|C3ZES3) DNA-directed RNA polymerase OS=Branchio... 63 2e-08
Q4YXG8_PLABE (tr|Q4YXG8) DNA-directed RNA polymerase OS=Plasmodi... 63 3e-08
Q4X634_PLACH (tr|Q4X634) DNA-directed RNA polymerase (Fragment) ... 63 3e-08
B6AG69_CRYMR (tr|B6AG69) DNA-directed RNA polymerase OS=Cryptosp... 62 3e-08
Q7RJK4_PLAYO (tr|Q7RJK4) DNA-directed RNA polymerase OS=Plasmodi... 62 3e-08
Q2U3T5_ASPOR (tr|Q2U3T5) DNA-directed RNA polymerase OS=Aspergil... 62 3e-08
B8NTG3_ASPFN (tr|B8NTG3) DNA-directed RNA polymerase OS=Aspergil... 62 3e-08
Q5WMZ9_ORYSJ (tr|Q5WMZ9) DNA-directed RNA polymerase OS=Oryza sa... 62 3e-08
A9TK89_PHYPA (tr|A9TK89) DNA-directed RNA polymerase OS=Physcomi... 62 3e-08
A9UN86_DROME (tr|A9UN86) DNA-directed RNA polymerase (Fragment) ... 62 3e-08
A8JUY3_DROME (tr|A8JUY3) DNA-directed RNA polymerase OS=Drosophi... 62 3e-08
Q0DKN9_ORYSJ (tr|Q0DKN9) DNA-directed RNA polymerase OS=Oryza sa... 62 3e-08
B4PX62_DROYA (tr|B4PX62) DNA-directed RNA polymerase OS=Drosophi... 62 4e-08
A4S3M0_OSTLU (tr|A4S3M0) DNA-directed RNA polymerase OS=Ostreoco... 62 4e-08
B4MT76_DROWI (tr|B4MT76) DNA-directed RNA polymerase OS=Drosophi... 62 4e-08
B4IKC6_DROSE (tr|B4IKC6) DNA-directed RNA polymerase OS=Drosophi... 62 5e-08
C4Y5N4_CLAL4 (tr|C4Y5N4) DNA-directed RNA polymerase OS=Clavispo... 62 5e-08
C3YEB7_BRAFL (tr|C3YEB7) DNA-directed RNA polymerase OS=Branchio... 62 5e-08
B4L5G1_DROMO (tr|B4L5G1) DNA-directed RNA polymerase OS=Drosophi... 61 6e-08
Q0U9K8_PHANO (tr|Q0U9K8) DNA-directed RNA polymerase OS=Phaeosph... 61 7e-08
C1GX38_PARBA (tr|C1GX38) DNA-directed RNA polymerase OS=Paracocc... 61 7e-08
C1GGI7_PARBD (tr|C1GGI7) DNA-directed RNA polymerase OS=Paracocc... 61 7e-08
B4R5H4_DROSI (tr|B4R5H4) DNA-directed RNA polymerase OS=Drosophi... 61 7e-08
C0SHD3_PARBP (tr|C0SHD3) DNA-directed RNA polymerase OS=Paracocc... 61 7e-08
B3NXK5_DROER (tr|B3NXK5) DNA-directed RNA polymerase OS=Drosophi... 61 8e-08
A8B4F1_GIALA (tr|A8B4F1) DNA-directed RNA polymerase OS=Giardia ... 61 8e-08
B3MLS5_DROAN (tr|B3MLS5) DNA-directed RNA polymerase OS=Drosophi... 61 9e-08
A6RGX8_AJECN (tr|A6RGX8) DNA-directed RNA polymerase OS=Ajellomy... 61 9e-08
C0NZL8_AJECG (tr|C0NZL8) DNA-directed RNA polymerase OS=Ajellomy... 61 9e-08
B4HCC5_DROPE (tr|B4HCC5) DNA-directed RNA polymerase OS=Drosophi... 61 1e-07
C5GRI8_AJEDR (tr|C5GRI8) DNA-directed RNA polymerase OS=Ajellomy... 60 1e-07
C5JRK1_AJEDS (tr|C5JRK1) DNA-directed RNA polymerase OS=Ajellomy... 60 1e-07
C5Y387_SORBI (tr|C5Y387) DNA-directed RNA polymerase OS=Sorghum ... 60 1e-07
D7FU80_ECTSI (tr|D7FU80) RNA polymerase III, largest subunit OS=... 60 1e-07
Q4YDD9_PLABE (tr|Q4YDD9) DNA-directed RNA polymerase (Fragment) ... 60 1e-07
Q29CI9_DROPS (tr|Q29CI9) DNA-directed RNA polymerase OS=Drosophi... 60 1e-07
D4AZK0_ARTBC (tr|D4AZK0) DNA-directed RNA polymerase OS=Arthrode... 60 1e-07
D0P371_PHYIN (tr|D0P371) DNA-directed RNA polymerase OS=Phytopht... 60 1e-07
D4D8U7_TRIVH (tr|D4D8U7) DNA-directed RNA polymerase OS=Trichoph... 60 1e-07
C5DY31_ZYGRC (tr|C5DY31) DNA-directed RNA polymerase OS=Zygosacc... 60 2e-07
B3T4N9_9ZZZZ (tr|B3T4N9) Putative RNA polymerase Rpb1, domain 1 ... 60 2e-07
C5FEK3_NANOT (tr|C5FEK3) DNA-directed RNA polymerase OS=Nannizzi... 60 2e-07
A8IRZ2_CHLRE (tr|A8IRZ2) DNA-directed RNA polymerase OS=Chlamydo... 60 2e-07
C6LP76_GIALA (tr|C6LP76) DNA-directed RNA polymerase OS=Giardia ... 60 2e-07
A7SJ34_NEMVE (tr|A7SJ34) DNA-directed RNA polymerase OS=Nematost... 59 2e-07
B6H2R1_PENCW (tr|B6H2R1) DNA-directed RNA polymerase OS=Penicill... 59 3e-07
C5PCH6_COCP7 (tr|C5PCH6) DNA-directed RNA polymerase OS=Coccidio... 59 3e-07
Q6CB20_YARLI (tr|Q6CB20) DNA-directed RNA polymerase OS=Yarrowia... 59 3e-07
C4V991_NOSCE (tr|C4V991) DNA-directed RNA polymerase OS=Nosema c... 59 3e-07
C4JWU1_UNCRE (tr|C4JWU1) DNA-directed RNA polymerase OS=Uncinoca... 59 3e-07
B3L6H5_PLAKH (tr|B3L6H5) DNA-directed RNA polymerase OS=Plasmodi... 59 4e-07
A7TNS6_VANPO (tr|A7TNS6) DNA-directed RNA polymerase OS=Vanderwa... 59 4e-07
D7MC36_ARALY (tr|D7MC36) Putative uncharacterized protein OS=Ara... 59 4e-07
Q0CS43_ASPTN (tr|Q0CS43) DNA-directed RNA polymerase OS=Aspergil... 59 4e-07
C1MN08_MICPS (tr|C1MN08) DNA-directed RNA polymerase OS=Micromon... 59 4e-07
A8Q6K6_MALGO (tr|A8Q6K6) DNA-directed RNA polymerase OS=Malassez... 59 5e-07
A8IFE0_CHLRE (tr|A8IFE0) DNA-directed RNA polymerase OS=Chlamydo... 59 5e-07
D2V0G9_NAEGR (tr|D2V0G9) DNA-directed RNA polymerase OS=Naegleri... 58 5e-07
D6WDY7_TRICA (tr|D6WDY7) Putative uncharacterized protein OS=Tri... 58 6e-07
Q4UCP5_THEAN (tr|Q4UCP5) DNA-directed RNA polymerase OS=Theileri... 58 6e-07
Q7RQQ6_PLAYO (tr|Q7RQQ6) DNA-directed RNA polymerase OS=Plasmodi... 58 6e-07
C1EA31_9CHLO (tr|C1EA31) DNA-directed RNA polymerase OS=Micromon... 58 7e-07
Q4YNT0_PLABE (tr|Q4YNT0) DNA-directed RNA polymerase (Fragment) ... 58 7e-07
A1D5Y9_NEOFI (tr|A1D5Y9) DNA-directed RNA polymerase OS=Neosarto... 58 7e-07
A5KB21_PLAVI (tr|A5KB21) DNA-directed RNA polymerase OS=Plasmodi... 58 7e-07
Q4WYV2_ASPFU (tr|Q4WYV2) DNA-directed RNA polymerase OS=Aspergil... 58 7e-07
B0XZZ0_ASPFC (tr|B0XZZ0) DNA-directed RNA polymerase OS=Aspergil... 58 7e-07
D2VMG0_NAEGR (tr|D2VMG0) DNA-directed RNA polymerase OS=Naegleri... 58 8e-07
C5KZ53_9ALVE (tr|C5KZ53) DNA-directed RNA polymerase OS=Perkinsu... 58 8e-07
Q4Y4B5_PLACH (tr|Q4Y4B5) DNA-directed RNA polymerase (Fragment) ... 58 8e-07
C8VPJ2_EMENI (tr|C8VPJ2) DNA-directed RNA polymerase OS=Aspergil... 58 8e-07
Q5BAB8_EMENI (tr|Q5BAB8) Putative uncharacterized protein OS=Eme... 57 9e-07
C1E5P6_9CHLO (tr|C1E5P6) DNA-directed RNA polymerase OS=Micromon... 57 1e-06
Q4YHQ6_PLABE (tr|Q4YHQ6) DNA-directed RNA polymerase (Fragment) ... 57 1e-06
Q6CMC7_KLULA (tr|Q6CMC7) DNA-directed RNA polymerase OS=Kluyvero... 57 1e-06
A2QU24_ASPNC (tr|A2QU24) DNA-directed RNA polymerase OS=Aspergil... 57 1e-06
A8PJK8_BRUMA (tr|A8PJK8) DNA-directed RNA polymerase OS=Brugia m... 57 1e-06
Q27900_EUPOC (tr|Q27900) DNA-directed RNA polymerase (Fragment) ... 57 1e-06
Q27095_TRIVA (tr|Q27095) DNA-directed RNA polymerase OS=Trichomo... 57 1e-06
A2DKT1_TRIVA (tr|A2DKT1) DNA-directed RNA polymerase OS=Trichomo... 57 1e-06
Q06VN9_TNAVC (tr|Q06VN9) DNA-directed RNA polymerase OS=Trichopl... 57 1e-06
B9SXC0_RICCO (tr|B9SXC0) DNA-directed RNA polymerase OS=Ricinus ... 57 1e-06
C6F1F7_PLAGA (tr|C6F1F7) DNA-directed RNA polymerase OS=Plasmodi... 57 1e-06
Q7RJS0_PLAYO (tr|Q7RJS0) DNA-directed RNA polymerase OS=Plasmodi... 57 2e-06
C1MI48_MICPS (tr|C1MI48) DNA-directed RNA polymerase OS=Micromon... 57 2e-06
B7Z6H4_HUMAN (tr|B7Z6H4) DNA-directed RNA polymerase OS=Homo sap... 57 2e-06
D3BKC8_POLPA (tr|D3BKC8) DNA-directed RNA polymerase OS=Polyspho... 57 2e-06
Q5GAF7_9VIRU (tr|Q5GAF7) DNA-directed RNA polymerase OS=Grouper ... 56 2e-06
Q4N0F9_THEPA (tr|Q4N0F9) DNA-directed RNA polymerase OS=Theileri... 56 2e-06
D2XA64_9VIRU (tr|D2XA64) DNA-directed RNA polymerase OS=Marseill... 56 2e-06
Q5YFG1_9VIRU (tr|Q5YFG1) DNA-directed RNA polymerase OS=Singapor... 56 2e-06
C5DJG5_LACTC (tr|C5DJG5) DNA-directed RNA polymerase OS=Lachance... 56 2e-06
B2RXC6_MOUSE (tr|B2RXC6) DNA-directed RNA polymerase OS=Mus musc... 56 2e-06
Q4P157_USTMA (tr|Q4P157) DNA-directed RNA polymerase OS=Ustilago... 56 3e-06
Q7TSI4_MOUSE (tr|Q7TSI4) DNA-directed RNA polymerase OS=Mus musc... 56 3e-06
A1CLD8_ASPCL (tr|A1CLD8) DNA-directed RNA polymerase OS=Aspergil... 56 3e-06
D7T1S1_VITVI (tr|D7T1S1) Whole genome shotgun sequence of line P... 56 3e-06
B9T0Q9_RICCO (tr|B9T0Q9) DNA-directed RNA polymerase OS=Ricinus ... 56 3e-06
Q4N1T2_THEPA (tr|Q4N1T2) DNA-directed RNA polymerase OS=Theileri... 56 3e-06
O77375_PLAF7 (tr|O77375) DNA-directed RNA polymerase OS=Plasmodi... 55 4e-06
Q6FKG9_CANGA (tr|Q6FKG9) DNA-directed RNA polymerase OS=Candida ... 55 4e-06
C9SQ00_VERA1 (tr|C9SQ00) DNA-directed RNA polymerase OS=Verticil... 55 4e-06
B6K857_SCHJY (tr|B6K857) DNA-directed RNA polymerase OS=Schizosa... 55 4e-06
Q4A369_EHV86 (tr|Q4A369) DNA-directed RNA polymerase OS=Emiliani... 55 5e-06
Q4Q3H2_LEIMA (tr|Q4Q3H2) DNA-directed RNA polymerase OS=Leishman... 55 5e-06
A4I9K6_LEIIN (tr|A4I9K6) DNA-directed RNA polymerase OS=Leishman... 55 5e-06
D2TF09_9VIRU (tr|D2TF09) DNA-directed RNA polymerase OS=Emiliani... 55 5e-06
D2VNK8_NAEGR (tr|D2VNK8) DNA-directed RNA polymerase OS=Naegleri... 55 5e-06
D2H987_AILME (tr|D2H987) DNA-directed RNA polymerase (Fragment) ... 55 5e-06
Q5KTW7_ENTHI (tr|Q5KTW7) DNA-directed RNA polymerase (Fragment) ... 55 6e-06
A4HAF0_LEIBR (tr|A4HAF0) DNA-directed RNA polymerase OS=Leishman... 55 6e-06
A7AP17_BABBO (tr|A7AP17) DNA-directed RNA polymerase OS=Babesia ... 55 7e-06
A8PGH2_COPC7 (tr|A8PGH2) DNA-directed RNA polymerase OS=Coprinop... 55 7e-06
Q756K2_ASHGO (tr|Q756K2) DNA-directed RNA polymerase OS=Ashbya g... 55 7e-06
A5E7R0_LODEL (tr|A5E7R0) DNA-directed RNA polymerase OS=Lodderom... 55 8e-06
B8BAW1_ORYSI (tr|B8BAW1) DNA-directed RNA polymerase OS=Oryza sa... 54 8e-06
Q4DZA9_TRYCR (tr|Q4DZA9) DNA-directed RNA polymerase OS=Trypanos... 54 9e-06
Q9BJ59_LEPSE (tr|Q9BJ59) DNA-directed RNA polymerase OS=Leptomon... 54 1e-05
>B9SL65_RICCO (tr|B9SL65) DNA-directed RNA polymerase OS=Ricinus communis
GN=RCOM_0090500 PE=3 SV=1
Length = 1686
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/216 (84%), Positives = 198/216 (91%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
GATESIDSI+FSFLTDEEVRKHSFVKIT+PRLLDLV+RPV GGLYDPALGPLSE TICKT
Sbjct: 10 GATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPLSERTICKT 69
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQR TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCF CFHFR+ RGQV+KC+KQLEL
Sbjct: 70 CGQRSTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFLCFHFRMQRGQVEKCIKQLEL 129
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
IVKGDIVGAKRL+SV PSE LYPEESD SHESC T+HSG QC++GEH +Q+ WTSLQF+E
Sbjct: 130 IVKGDIVGAKRLESVSPSEALYPEESDLSHESCPTIHSGVQCNDGEHTRQQGWTSLQFTE 189
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFYT 216
A SVLN FL PKFKKCKNC + NPNITKP FGWF+T
Sbjct: 190 AMSVLNNFLKPKFKKCKNCESSNPNITKPTFGWFHT 225
>B9HA70_POPTR (tr|B9HA70) DNA-directed RNA polymerase OS=Populus trichocarpa
GN=POPTRDRAFT_560551 PE=3 SV=1
Length = 1168
Score = 330 bits (845), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 173/215 (80%), Gaps = 1/215 (0%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
GAT S+DS+ FSFLTDEEV KHSFVKIT RLLD +D+PV GGLYDPA+GPL + CKT
Sbjct: 6 GATVSVDSVAFSFLTDEEVHKHSFVKITSARLLDTLDKPVPGGLYDPAMGPLGDEP-CKT 64
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQR TNC GHCGHIDL+SPVYNPLLFNFLHKLLQRTCF+CFHFR QV+K V QLEL
Sbjct: 65 CGQRSTNCTGHCGHIDLISPVYNPLLFNFLHKLLQRTCFFCFHFRADSNQVEKFVSQLEL 124
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
I+KGD+VGAKRLDS P E PE+SDGS ESCST+HSGA+ N E KQ EWTSLQ SE
Sbjct: 125 IIKGDVVGAKRLDSFSPIEASLPEDSDGSSESCSTIHSGARHPNNEQSKQSEWTSLQLSE 184
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFY 215
A S+LN FL + KKCKNC A NPNI KP FGWF+
Sbjct: 185 AMSILNNFLKLESKKCKNCSASNPNIRKPTFGWFH 219
>D7TI03_VITVI (tr|D7TI03) Whole genome shotgun sequence of line PN40024,
scaffold_7.assembly12x (Fragment) OS=Vitis vinifera
GN=VIT_00033327001 PE=4 SV=1
Length = 1669
Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/216 (63%), Positives = 164/216 (75%), Gaps = 1/216 (0%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G TE ++++ FSF TDEEVRK+SF KIT P +LD V RPV GGLYDPALG + E T C++
Sbjct: 7 GTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDENTPCQS 66
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQR CPGHCGHIDLVS VYNPLLFN LH LLQ+TCF+C HF+ V K V QLEL
Sbjct: 67 CGQRSFYCPGHCGHIDLVSSVYNPLLFNLLHNLLQKTCFFCHHFKTSSSLVQKYVSQLEL 126
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESC-STVHSGAQCHNGEHMKQKEWTSLQFS 179
I KGD+VGAK LDS+ PSE+ YPE+SDGSH SC STV+S A+ + H+KQ+EWTSLQ
Sbjct: 127 ISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCI 186
Query: 180 EATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFY 215
EA SV++ FL K + CKNC A +P +TKP FGWF+
Sbjct: 187 EAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFH 222
>D7LVV3_ARALY (tr|D7LVV3) Putative uncharacterized protein OS=Arabidopsis lyrata
subsp. lyrata GN=ARALYDRAFT_486216 PE=4 SV=1
Length = 1678
Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 146/213 (68%), Gaps = 4/213 (1%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
GA++ ++S+ FSF+T+++VRKHSF+K+T P LLD V P GGLYDP LGP+ + C T
Sbjct: 22 GASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPIEDKKACDT 81
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ CPGHCGHI+LV P+Y+PLLFN L+ LQRTCF C HF V++ V QL+L
Sbjct: 82 CGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVERAVSQLKL 141
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
I+KGDIV AK+L+S P+++ + SD S ES T S C + + M+ + WTSLQF+E
Sbjct: 142 IIKGDIVSAKQLESNTPTKS---DSSDVSCESGVTTDSSEGCEDSD-MEDQRWTSLQFAE 197
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGW 213
T+V+ F+ K C C AVNP + KPMFGW
Sbjct: 198 VTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGW 230
>Q9SVY0_ARATH (tr|Q9SVY0) DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=F15B8.150 PE=3 SV=1
Length = 1670
Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 142/213 (66%), Gaps = 4/213 (1%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
GA++ ++S+ FSF+T+++VRKHSF+K+T P L D V P GGLYD LGP + C +
Sbjct: 22 GASQVVESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDKQACNS 81
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ CPGHCGHI+LV P+Y+PLLFN L LQR CF+C HF V++ V QL+L
Sbjct: 82 CGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAVSQLKL 141
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
I+KGDIV AK+L+S P+++ + SD S ES T S +C + + ++ + WTSLQF+E
Sbjct: 142 IIKGDIVSAKQLESNTPTKS---KSSDESCESVVTTDSSEECEDSD-VEDQRWTSLQFAE 197
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGW 213
T+VL F+ K C C +NP + KPMFGW
Sbjct: 198 VTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGW 230
>C5YUX2_SORBI (tr|C5YUX2) DNA-directed RNA polymerase (Fragment) OS=Sorghum
bicolor GN=Sb09g027223 PE=3 SV=1
Length = 799
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 131/215 (60%), Gaps = 9/215 (4%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E +DS+ FSF +D+E+++ S KIT LD + PV GGL DPA+GP+++ CK+
Sbjct: 9 AASEEVDSLHFSFYSDDEIKRISIKKITKLERLDAKNLPVPGGLLDPAMGPINDTDTCKS 68
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ CPGH GHI+L P++NPLLF L LL TCFYC FR+++ QVD+ V +LEL
Sbjct: 69 CGQNSVRCPGHFGHIELAKPLFNPLLFMSLRNLLHVTCFYCHKFRLNKEQVDRYVNELEL 128
Query: 121 IVKGDIVGAKRL-DSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFS 179
+VKGDIVGAK L DSV E EE + E+ S S + N K WTS+Q
Sbjct: 129 LVKGDIVGAKNLEDSV--KEAYLSEEDENITETTSGDKSSSVKDN------KTWTSVQLK 180
Query: 180 EATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
E S+ + + + KC C +P I+ P+FGW
Sbjct: 181 EVLSIFSKIMKKRQTKCAKCDMKSPTISSPIFGWL 215
>A5BD07_VITVI (tr|A5BD07) DNA-directed RNA polymerase OS=Vitis vinifera
GN=VITISV_029145 PE=3 SV=1
Length = 1350
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 135/216 (62%), Gaps = 25/216 (11%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G TE ++++ FSF TDEEVRK+SF KIT P +LD V RPV GGLYDPALG + E
Sbjct: 100 GTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSIDE------ 153
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
N PG+ G I L+ +L HF QV K V QLEL
Sbjct: 154 ------NTPGN-GRILLI--------VKKREELQXVNHAASVHFI---AQVQKYVSQLEL 195
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCS-TVHSGAQCHNGEHMKQKEWTSLQFS 179
I KGD+VGAK LDS+ PSE+ YPE+SDGSH SCS TV+S A+ + H+KQ+EWTSLQ
Sbjct: 196 ISKGDVVGAKNLDSISPSESSYPEDSDGSHVSCSSTVNSSARDNCSVHLKQQEWTSLQCI 255
Query: 180 EATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFY 215
EA SV++ FL K + CKNC A +P +TKP FGWF+
Sbjct: 256 EAMSVMDNFLKLKHRDCKNCKAKSPQVTKPTFGWFH 291
>C0JAC0_ORYCO (tr|C0JAC0) DNA-directed RNA polymerase OS=Oryza coarctata PE=3
SV=1
Length = 1830
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 129/214 (60%), Gaps = 8/214 (3%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E +DSI FSF D+E+R+ S +IT LD + PV GGL DPA+GP ++ CK+
Sbjct: 8 AASEEVDSIHFSFYNDDEIRRISVKQITKADRLDAKNCPVPGGLLDPAMGPTNDTDTCKS 67
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ CPGH GHI+L P++NPLLF L LL TCF+C FR++RGQVD+ +LEL
Sbjct: 68 CGQHSVRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNRGQVDRYTNELEL 127
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
+V+GDI AK L+ ++ E D E+ +T C GE+ K WTS+Q E
Sbjct: 128 LVRGDIALAKNLED--SGGKVFLAEDD---ETEATSGDKLACSEGEN---KTWTSIQLKE 179
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
A S+ L + KKC +C NP I+ P++GW
Sbjct: 180 ALSIFAKLLKKRQKKCVHCDKKNPKISHPVYGWL 213
>B8B4L0_ORYSI (tr|B8B4L0) DNA-directed RNA polymerase OS=Oryza sativa subsp.
indica GN=OsI_23688 PE=3 SV=1
Length = 1350
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/214 (41%), Positives = 130/214 (60%), Gaps = 8/214 (3%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E ++SI FSF D+E+++ S +IT +D + PV GGL DPA+GP ++ CK+
Sbjct: 102 AASEEVNSIHFSFYNDDEIKRISVKQITKSDRVDAKNCPVPGGLLDPAMGPTNDTDTCKS 161
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ+ CPGH GHI+L P++NPLLF L LLQ TCF+C FR+++ QVD+ +LEL
Sbjct: 162 CGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQVDRYTNELEL 221
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
+V+GDI AK L+ L + L E+ + + SG + E + K WTS+Q E
Sbjct: 222 LVRGDIAHAKNLED-LGGKVLSKEDDE------TEATSGDKSARSER-ENKTWTSIQLKE 273
Query: 181 ATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
A S+ + + + KKC +C NP I P++GW
Sbjct: 274 ALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWL 307
>C0JAE8_9ORYZ (tr|C0JAE8) DNA-directed RNA polymerase (Fragment) OS=Oryza
brachyantha PE=3 SV=1
Length = 1138
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 127/218 (58%), Gaps = 16/218 (7%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E ++SI FSF D+E+++ S +IT P LD + PV GGL DPA+GP S+ CK+
Sbjct: 8 AASEEVESIHFSFYNDDEIKRISVKQITKPDRLDAKNCPVPGGLLDPAMGPTSDTDTCKS 67
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ CPGH GHI+L P++NPLLF L LL TCF+C FR++R QVD+ +LEL
Sbjct: 68 CGQHSVRCPGHFGHIELAKPLFNPLLFLSLKNLLHMTCFHCHKFRLNREQVDRYTDELEL 127
Query: 121 IVKGDIVGAKRLDS----VLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSL 176
+VKGDI AK L+ VL E E + G +CS + K WTS+
Sbjct: 128 LVKGDIAHAKNLEDSGGKVLLEEDDKTEATSGDKSTCS------------ESENKTWTSI 175
Query: 177 QFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
Q E S+ F+ + KKC +C NP I+ P++GW
Sbjct: 176 QLKEVLSIFANFMKKRQKKCTHCNKKNPKISHPIYGWL 213
>Q69X40_ORYSJ (tr|Q69X40) DNA-directed RNA polymerase OS=Oryza sativa subsp.
japonica GN=P0429G06.12 PE=3 SV=1
Length = 1748
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 16/222 (7%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E ++SI FSF D+E+++ S +IT +D + PV GGL DPA+GP ++ CK+
Sbjct: 8 AASEEVNSIHFSFYNDDEIKRISVKQITKSDRVDAKNCPVPGGLLDPAMGPTNDTDTCKS 67
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK---- 116
CGQ+ CPGH GHI+L P++NPLLF L LLQ TCF+C FR+++ Q + +
Sbjct: 68 CGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQHSRFCRITKI 127
Query: 117 ----QLELIVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKE 172
+LEL+V+GDI AK L+ L + L E+ + + SG + E + K
Sbjct: 128 FDFLELELLVRGDIAHAKNLED-LGGKVLSKEDDE------TEATSGDKSARSER-ENKT 179
Query: 173 WTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
WTS+Q EA S+ + + + KKC +C NP I P++GW
Sbjct: 180 WTSIQLKEALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWL 221
>C0JA57_9ORYZ (tr|C0JA57) DNA-directed RNA polymerase (Fragment) OS=Oryza minuta
PE=3 SV=1
Length = 563
Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 16/222 (7%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
A+E ++SI FSF D+E+++ S +IT +D + PV GGL DPA+GP S CK+
Sbjct: 8 AASEEVNSIHFSFYYDDEIKRISVKQITKSDCVDAKNCPVPGGLLDPAMGPTSVTDTCKS 67
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRG--------QVD 112
CGQ+ CPGH GHI+L P++NPLLF L LL TCF+C FR++R QVD
Sbjct: 68 CGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLHVTCFHCHKFRLNREQFSLSWSIQVD 127
Query: 113 KCVKQLELIVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKE 172
+ +LEL+V+GDI AK L+ + + EE D + + SG + E + K
Sbjct: 128 RYTNELELLVRGDIAHAKNLEDL--GGKVLSEEDDETEAT-----SGDKSARSER-ENKT 179
Query: 173 WTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
WTS+Q EA S+ + K KKC +C NP I+ P++GW
Sbjct: 180 WTSIQLKEALSIFAKLMKKKQKKCAHCEKKNPIISHPIYGWL 221
>Q00WA2_OSTTA (tr|Q00WA2) DNA-directed RNA polymerase OS=Ostreococcus tauri
GN=Ot14g01100 PE=3 SV=1
Length = 1789
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 119/219 (54%), Gaps = 24/219 (10%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S +FSF +EVRK S +IT+P L D ++ V GLYDPALGP T C TC
Sbjct: 75 IASASFSFYDADEVRKISVKRITNPTLFDGLNNAVPDGLYDPALGPTDAKTTCVTCKYPG 134
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
C GH GHI+LV PVYNPL F + +LL+ TCF+C FR+H +V + ++LE+++ GD
Sbjct: 135 GMCDGHFGHIELVVPVYNPLTFGTVVRLLKTTCFHCHRFRMHESRVRRFRERLEMLMDGD 194
Query: 126 IVGAKRLDSVLP----------SETLYPEESDGSHESC--STVHS-----GAQCHNGEHM 168
+ GA ++V+P SE E DG E +H + NG
Sbjct: 195 VEGA---ENVMPEISKKAKKEMSEIWQEVEDDGDVEEMDLDNIHDVLPRLKTKGKNGPVA 251
Query: 169 KQKEWTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNIT 207
WTS+ + A ++ FL + KKC+NC AVNP ++
Sbjct: 252 ----WTSVSSTAARELIKEFLSIQPKKCENCNAVNPKVS 286
>A4SAV6_OSTLU (tr|A4SAV6) DNA-directed RNA polymerase OS=Ostreococcus lucimarinus
(strain CCE9901) GN=OSTLU_43496 PE=3 SV=1
Length = 1663
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 28/223 (12%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I S +FSF E+VRK S +IT+P L D ++ V GLYDPALGP T C TC
Sbjct: 22 KEIASASFSFYDAEDVRKISVKRITNPVLFDGLNNAVADGLYDPALGPTDSKTTCVTCKF 81
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
C GH GH++LV PVYNPL F + +LL+ TCF+C FR+H +V + ++LE+++
Sbjct: 82 PGGMCAGHFGHLELVVPVYNPLTFGTVVRLLKTTCFHCHKFRLHASRVRRFRERLEMLMD 141
Query: 124 GDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCH-NGEHMKQKE---------- 172
GD+ A E + PE S + E S+V + + E M
Sbjct: 142 GDMEAA---------EGVLPEISKKAKEEMSSVFKEVEGDGDAEEMDLDNIHDVLPRLKT 192
Query: 173 --------WTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNIT 207
WTS+ + A +++ FL + KKC+NCGA+NP ++
Sbjct: 193 RGRGEPVVWTSITSTAARNLIKEFLAIQPKKCENCGAMNPKVS 235
>C1N756_MICPS (tr|C1N756) DNA-directed RNA polymerase OS=Micromonas pusilla
CCMP1545 GN=MICPUCDRAFT_36623 PE=3 SV=1
Length = 1665
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 76/213 (35%), Positives = 110/213 (51%), Gaps = 8/213 (3%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
T+ I S +FSF EE R+ S +I++P L D + PV GLYDPALGP+ + C TC
Sbjct: 17 TKEITSTSFSFYDAEEARRISVKRISNPVLFDALSNPVADGLYDPALGPIDQRGSCATCR 76
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+CPGH GHI+L PVYNPL F+ + +LL+ C +C F++ +V ++L LI
Sbjct: 77 LGAMHCPGHFGHIELAVPVYNPLTFSVVVRLLRSACLHCGKFKLAADRVAAYREKLRLIR 136
Query: 123 KGDIVGAKRLDSVLPSETLYPE-----ESDGSHESCSTVHSG---AQCHNGEHMKQKEWT 174
+GD+ GA +D S+ E E G + T H H G + WT
Sbjct: 137 EGDLEGAANVDVHGVSKQTRAELNEIREMVGDLGTMDTTHVSRVIPVAHQGRRKDRVRWT 196
Query: 175 SLQFSEATSVLNTFLMPKFKKCKNCGAVNPNIT 207
S + ++ FL KC+NCG +P ++
Sbjct: 197 SHAMMLSRDLVKEFLAATPGKCENCGVCSPKVS 229
>C1EFA8_9CHLO (tr|C1EFA8) DNA-directed RNA polymerase (Fragment) OS=Micromonas
sp. RCC299 GN=MICPUN_65110 PE=3 SV=1
Length = 1616
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/206 (35%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S +FSF EE R+ S +I++P L D ++ PV GLYDPALGP+ + C TC
Sbjct: 1 IVSTSFSFYDAEEARRISVKRISNPVLFDALNNPVQDGLYDPALGPIDKKGSCATCRLSA 60
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+CPGH GHI+L PVYNPL F + +LL+ C +C F++ +V ++++LI GD
Sbjct: 61 MHCPGHFGHIELAVPVYNPLTFGTVVRLLRGMCLHCHRFKMGADRVAAYSRKMQLIRAGD 120
Query: 126 IVGAKRLDSVLPS----ETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEA 181
+ A + +V S E + E DG + V + A + WT+ E+
Sbjct: 121 LNAAAEISTVGVSKQVREAIAELEEDGLGRDVADVDTTAD--------RVVWTTNSMVES 172
Query: 182 TSVLNTFLMPKFKKCKNCGAVNPNIT 207
++ FL KC+NCG +P +T
Sbjct: 173 RDLIRNFLASVPAKCENCGCCSPKVT 198
>D7FNY1_ECTSI (tr|D7FNY1) RNA polymerase 1-4 RNA polymerase I large subunit
OS=Ectocarpus siliculosus GN=RPA PE=4 SV=1
Length = 1234
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 112/218 (51%), Gaps = 14/218 (6%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+++ I F FLTD+++R+ S +IT P D ++ P+ GGLYDP LGP+ + +C+TCGQ
Sbjct: 11 AVEEIGFGFLTDDDIRRLSVKRITSPVTFDTLNNPLPGGLYDPVLGPVDKMMMCETCGQD 70
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
NCPGH GHI+L VY+P+LF L+KLL+ CF C + R+ + + ++ L+ G
Sbjct: 71 QKNCPGHMGHIELAVSVYHPILFGALYKLLRAKCFSCHNLRLSKSKTRVAAVKMMLVDAG 130
Query: 125 DIVGAKRLDSV----LPSETLYPEESDGSHESCSTVHSGAQCH-------NGEHMKQKEW 173
A LD+ L + DG+ E + + H + + EW
Sbjct: 131 RAQEALELDATLLGYLKDGARDHDVLDGNTEDTLVSATKYRDHVLGCLEEDLAGAPRAEW 190
Query: 174 TSLQFSEATSVLNTFLMPKF---KKCKNCGAVNPNITK 208
+ L L+ K+C+NCGA +PNI K
Sbjct: 191 CGGHNRQLRRQLAENLIKAMGACKRCENCGAFSPNIRK 228
>Q4PB85_USTMA (tr|Q4PB85) DNA-directed RNA polymerase OS=Ustilago maydis
GN=UM02628.1 PE=3 SV=1
Length = 1795
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 83/135 (61%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
T +I S +FSFLT E++R+ S +I +P LLD + P GGLYDPALGP+ IC TC
Sbjct: 8 TSTISSASFSFLTAEDIRRISVKQIINPVLLDTTNHPNAGGLYDPALGPMRPNDICSTCH 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
CPGH GHI+L SPV++PL + LL+ TCFYC FR+ + K + +L L+
Sbjct: 68 LNSYQCPGHFGHIELPSPVFHPLFMGNMFNLLRGTCFYCHRFRLPLVVLTKVIGRLRLLE 127
Query: 123 KGDIVGAKRLDSVLP 137
G + A+ +++ P
Sbjct: 128 YGLVDDAENIEAEEP 142
>D6RMH4_COPC7 (tr|D6RMH4) RNA polymerase I largest subunit OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_14600 PE=4
SV=1
Length = 1726
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 83/131 (63%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
++ ++FSFLT +++R+ S +I +P LLD ++RP +GGLYDPALGP IC TC
Sbjct: 10 TVTGVSFSFLTAQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPALGPHDRSDICATCHLT 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
CPGH GHI+L +PV++PL L+ LL+ C +C F++ R Q+ K + +L L+ G
Sbjct: 70 YFTCPGHFGHIELPAPVFHPLFMGNLYNLLRGMCMFCHRFKMSRTQLSKYMAKLRLLEHG 129
Query: 125 DIVGAKRLDSV 135
+ A +D +
Sbjct: 130 LVEAAMGVDDI 140
>D3BS87_POLPA (tr|D3BS87) DNA-directed RNA polymerase OS=Polysphondylium pallidum
PN500 GN=rpa1 PE=3 SV=1
Length = 1674
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 78/127 (61%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ S +F+F T +E+RK S +IT+P DL+ P GG YD ALG C+TC
Sbjct: 12 VSSASFAFYTADEIRKLSQKQITEPETFDLLGNPQPGGCYDKALGTSEAFERCQTCNLHH 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+CPGH GHI+L P YNP++F L KLLQ TC C F+ + +D +++LEL+ G+
Sbjct: 72 VDCPGHYGHIELAVPTYNPVMFKVLFKLLQNTCLNCHRFKHGKATIDSLIQELELLYSGE 131
Query: 126 IVGAKRL 132
IV AK++
Sbjct: 132 IVKAKQV 138
>A0DJB3_PARTE (tr|A0DJB3) DNA-directed RNA polymerase OS=Paramecium tetraurelia
GN=GSPATT00017474001 PE=3 SV=1
Length = 1696
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 75/254 (29%), Positives = 111/254 (43%), Gaps = 48/254 (18%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALG--PLSEGTICKT 60
T+ I S+ F + T +E+R+ S +I++P+ D ++ P+ GGLYDPALG P GT C T
Sbjct: 21 TKRIQSVHFGYYTAKEIREMSVKEISNPKAFDKLNHPIRGGLYDPALGVQPHERGTRCVT 80
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CGQ +C GH GHI+L+ PVYNP L N L L++ C+YC RI + + +L
Sbjct: 81 CGQENMDCTGHVGHIELLLPVYNPYLVNQLMSLMRSKCYYCHKLRITKDRKKFYKNNFKL 140
Query: 121 IVKGDIVGAKRLDSV------LPSETLYPEESDGSHESCSTVHSGA----------QC-- 162
+ G ++ K+ + L +T E S + T G+ QC
Sbjct: 141 LRLGRLIEMKKYQKLYMTKLRLNKQTKNAENRKQSITATDTSRKGSDHRKGSDNKMQCDQ 200
Query: 163 ----------------------------HNGEHMKQKEWTSLQFSEATSVLNTFLMPKFK 194
H E++ TS E + F K
Sbjct: 201 ETAPQEFLDIEDVKQQIQEILDILQVKKHQSEYIDGIHQTSHILQELKILTKQFFKDINK 260
Query: 195 KCKNCGAVNPNITK 208
KC +C V+PN+ K
Sbjct: 261 KCPHCNKVSPNVRK 274
>B0CXW7_LACBS (tr|B0CXW7) DNA-directed RNA polymerase OS=Laccaria bicolor (strain
S238N-H82) GN=LACBIDRAFT_245901 PE=3 SV=1
Length = 1711
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 85/131 (64%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
++ ++FSFLT +++R+ S +I +P LLD ++RP +GGLYDP+LGP IC TC
Sbjct: 10 TVAGVSFSFLTSQDIRRISVKQIVNPVLLDDLNRPNIGGLYDPSLGPSDRSDICATCHLT 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
CPGH GHI+L +PV++PL ++ LL+ TC +C F++ R + K + +L L+ +G
Sbjct: 70 YFTCPGHFGHIELPAPVFHPLFMTNMYNLLRGTCMFCHRFKMTRTVLWKFMAKLRLLERG 129
Query: 125 DIVGAKRLDSV 135
+ A+ +D +
Sbjct: 130 LLDAAQGVDDI 140
>D0MYP8_PHYIN (tr|D0MYP8) DNA-directed RNA polymerase OS=Phytophthora infestans
T30-4 GN=PITG_03855 PE=3 SV=1
Length = 1811
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 101/213 (47%), Gaps = 10/213 (4%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ + F F +D E+R S ++T D ++ PV+GGLYDPALGP+ IC TC Q
Sbjct: 14 VAEVAFGFYSDAEIRDLSVKQLTSRLSFDSLNNPVVGGLYDPALGPVDFNMICPTCHQTQ 73
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNP+LF + LL+R CF C FR+ + ++ L+ G
Sbjct: 74 KECPGHLGHIELPVPVYNPVLFGQMLNLLKRKCFTCHKFRVASARSRVVRVKILLLDNGF 133
Query: 126 IVGAKRLDSVL----------PSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTS 175
A +L +L P T +++ + NG+ +
Sbjct: 134 DNEAGQLGELLEQRNGVEDEPPQRTFQRQQAILDEYERLALSKSITSTNGKTQLLRPLPR 193
Query: 176 LQFSEATSVLNTFLMPKFKKCKNCGAVNPNITK 208
+ ++ FL KC+NCGA++P I +
Sbjct: 194 VAEVTREKLVIEFLKSMKNKCENCGAISPAIRQ 226
>A8J568_CHLRE (tr|A8J568) DNA-directed RNA polymerase (Fragment) OS=Chlamydomonas
reinhardtii GN=RPA1 PE=3 SV=1
Length = 1515
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 74/239 (30%), Positives = 113/239 (47%), Gaps = 39/239 (16%)
Query: 3 TESIDSITFSFLTDEE------------VRKHSFVKITDPRLLDLVDRPVLGGLYDPALG 50
T+ + ++ F F +++E VRK S V IT P + D PV GLYDP +G
Sbjct: 11 TKQVAAVRFGFYSEDEHYAKQSHAVRLQVRKLSVVNITCPLIFDDAKVPVKDGLYDPRMG 70
Query: 51 PLSEGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQ 110
P C TC CPGH G I+L PVYNPL+F ++KLL+ TC +C F++ +
Sbjct: 71 PTDSRDKCGTCLLSHDRCPGHFGRIELPVPVYNPLVFKVMYKLLRCTCLHCHRFKLSQDT 130
Query: 111 VDKCVKQLELIVKGDIVGA------KRLDSVLPSETLYPEESDGSH---ESCSTVHSGAQ 161
VD +++L +V GD+V A + + S +E + +SD + +S S +G +
Sbjct: 131 VDTYLRKLTRLVDGDLVKAVEISTERHVKSKELAELMAGGDSDDTEPKPDSSSKAAAGGK 190
Query: 162 CHNG----------EHMKQKEWTSLQ--FSEATSVLNTFLMPKFKKCKNCGAVNPNITK 208
++ Q ++Q SE +N+ KC+NC NP I K
Sbjct: 191 PGQAGAGGKGHAARRNITQHTLEAMQDTISELLGKMNS------NKCQNCKVTNPQIKK 243
>A6SJ73_BOTFB (tr|A6SJ73) DNA-directed RNA polymerase OS=Botryotinia fuckeliana
(strain B05.10) GN=BC1G_12809 PE=3 SV=1
Length = 1774
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 15/221 (6%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+I+S+ F+FL+ E++ S +I +P D + PV GGLYDPALG + C TC
Sbjct: 10 AIESVDFAFLSTAEIKSLSVKRIENPVTFDSLLHPVPGGLYDPALGAWGDNN-CTTCNLS 68
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+CPGH GHIDL +PVY+P + + +LL+ C YC FR+ R +V++ V +L LI +G
Sbjct: 69 SFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFRMSRKEVNRYVCKLRLIQQG 128
Query: 125 DIVGAKRLDSVLPSETLYPEE--SDGSHESC--STVHSGAQCHNGEHMKQK----EWTSL 176
+ A+ ++++ ++ EE SD ES S + E K EW
Sbjct: 129 LLSAAEEIENIEVAQPKEGEEPASDSDDESPIDSVIRRRLAFVKKELKAAKASGWEWRRE 188
Query: 177 Q---FSEATSVLNTFLMPKF---KKCKNCGAVNPNITKPMF 211
+ +EA V+ M + C NC ++P K +
Sbjct: 189 KHEGVAEARRVVVKSFMKAITAGRLCGNCQGISPTYRKDRY 229
>A7EW95_SCLS1 (tr|A7EW95) DNA-directed RNA polymerase OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_09604 PE=3
SV=1
Length = 1705
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+I+S+ F+FL+ E++ S +I +P D + PV GGLYDPALG + C TC
Sbjct: 10 AIESVEFAFLSTAEIKSLSVKRIENPVTFDSLLHPVPGGLYDPALGAWGDNN-CTTCNLS 68
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+CPGH GHIDL +PVY+P + + +LL+ C YC F++ R +V++ V +L LI +G
Sbjct: 69 SFSCPGHAGHIDLPAPVYHPTFMDQVLRLLRSKCKYCHQFKMSRKEVNRYVCKLRLIQQG 128
Query: 125 DIVGAKRLDSV---LPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQK-----EWTSL 176
+ A+ +D++ P E P +V + +K EW
Sbjct: 129 LLSAAEEIDNIEVAQPKEGEEPASDSDEETPVDSVIRRRLAFVKKELKAAKASGWEWRRE 188
Query: 177 Q---FSEATSVLNTFLMPKF---KKCKNCGAVNPNITKPMF 211
+ +EA V+ M + C NC ++P K +
Sbjct: 189 KHEGVAEARRVVVKSFMKAITAGRLCGNCQGISPTYRKDRY 229
>B2B231_PODAN (tr|B2B231) DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 1706
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 111/236 (47%), Gaps = 28/236 (11%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ ++DS+ F FLT +E+R S +I +P D + PV GGLYDPALG + C+TCG
Sbjct: 8 SSTLDSVDFQFLTSDEIRAVSVKRIENPVTFDTLLNPVPGGLYDPALGSWGDAP-CRTCG 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
CPGH GHI+L P Y+P+ + + L+ C YC HFR R ++ + L+L+
Sbjct: 67 LNQAQCPGHPGHIELAVPCYHPVFMDQAFRFLRSMCIYCHHFRTARREIHRFACMLKLLQ 126
Query: 123 KGDIVGAKRLDSVLPSET-----------LYPEESDGSHESCSTVHSGAQCHNG------ 165
G + A+ +D++ SE P D + + ST +
Sbjct: 127 YGLLHEAQLIDAISESELGGEKLKSMRLPDIPNMDDEAEDEGSTTDVTMRAREAYVRQVL 186
Query: 166 -EHMKQKEWTSLQFS--EATSVLNTFLMP-------KFKKCKNCGAVNPNITKPMF 211
EH + ++ + E + + L+ K K+CK+C ++P + K +
Sbjct: 187 KEHRTRLSAGDIKRAKHEGAAEMRRALLKELFATLVKEKRCKSCDGISPTLRKDRY 242
>C5MB41_CANTT (tr|C5MB41) DNA-directed RNA polymerase OS=Candida tropicalis
(strain ATCC MYA-3404 / T1) GN=CTRG_03283 PE=3 SV=1
Length = 831
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+D+E+RK S +IT+P + D + P+ GGLYD +LG +C TCG
Sbjct: 11 ITSVDFGVLSDDEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR-NVCTTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNP+ FN L+ L+ C YC +F++++ +V K +L LI G
Sbjct: 70 KFCPGHMGHIELPVPVYNPMFFNQLYIFLRSACLYCHNFKLNQVEVHKYQCKLHLIQYGL 129
Query: 126 IVGAKRLDSVLPSET 140
++ LD++L S +
Sbjct: 130 LLECVELDNILASSS 144
>Q6FV16_CANGA (tr|Q6FV16) DNA-directed RNA polymerase OS=Candida glabrata
GN=CAGL0E05500g PE=3 SV=1
Length = 1643
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 115/237 (48%), Gaps = 32/237 (13%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT ++R S +IT+P +LD + P+ GGLYD ALG +C TCG
Sbjct: 11 ISSVDFGILTSADIRNLSAKRITNPTVLDNLGHPISGGLYDLALGAFLRN-LCGTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ C +C HF++ V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSACLFCHHFKLKSLDVHRYACKLRLLQYGL 129
Query: 126 I-----VGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSE 180
I V + +LD+VL +++ E DG E+ + + A K+KE+ + ++
Sbjct: 130 IDESYQVDSIQLDNVL--DSMEAVEDDGEGENKNDM--SATLSKELKQKRKEFVDISIAK 185
Query: 181 A-----TSVLNTF----------LMPKFK-------KCKNCGAVNPNITKPMFGWFY 215
A TS TF L+ +F KC NCG +P K F +
Sbjct: 186 AISEGRTSERGTFTATVNDERKKLLHEFHKRLLMRPKCDNCGMYSPKFRKDGFTKIF 242
>A7TPJ8_VANPO (tr|A7TPJ8) DNA-directed RNA polymerase OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1040p3
PE=3 SV=1
Length = 1656
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI FS LT +E+R S +IT+P +LD + P+ GGLYD ALG +C TCG
Sbjct: 11 ITSIDFSILTAQEIRNLSAKQITNPTVLDNLGHPISGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L+L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLRSIEVHRYTCKLKLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LDS+
Sbjct: 130 IDESYQLDSI 139
>Q0U0A2_PHANO (tr|Q0U0A2) DNA-directed RNA polymerase OS=Phaeosphaeria nodorum
GN=SNOG_14953 PE=3 SV=2
Length = 1691
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ +I S+ F FL+ ++VR S +IT+P D + PV GGL+D ALG + C TCG
Sbjct: 8 SSAIQSVEFGFLSTQDVRTLSVKRITNPTTFDSLLHPVAGGLHDAALGAFLDNP-CSTCG 66
Query: 63 -QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
CPGHCGHI+L PVYN + L +LL+ C YC ++ R V++ V +L LI
Sbjct: 67 LTTFMGCPGHCGHIELPVPVYNLTFLDQLLRLLRGKCVYCHQLKLARVTVNEFVSRLRLI 126
Query: 122 VKGDIVGAKRLDSVLPSE----TLYPEESDGSHESCSTVHSG----AQCHNGEHMKQKEW 173
G + A L + + +ESD E+ V +C + ++
Sbjct: 127 RCGLVQEANELHEHVNASKGKTKRTAQESDSEDENDDIVSQQNNYVKKCLKKAGITSRDV 186
Query: 174 TSL-QFSEATSVLNTFLMPKF-------KKCKNCGAVNPNITK 208
S+ + ++A S ++ +F KKCKNC +NP K
Sbjct: 187 RSIKEKNDAISDARRQVLKEFYAQVAYGKKCKNCQGINPTYRK 229
>A5DSZ8_LODEL (tr|A5DSZ8) DNA-directed RNA polymerase OS=Lodderomyces
elongisporus GN=LELG_00484 PE=3 SV=1
Length = 1668
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+D E++K S +I++P + D + PV GGLYD +LG +C TCG
Sbjct: 11 ITSVDFGVLSDAEIQKLSAKQISNPIVFDNLGHPVNGGLYDLSLGAFLR-NVCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHIDL PVYNP+ FN L+ L+ +C YC HF+++ +V+ +L+LI G
Sbjct: 70 KFCPGHMGHIDLPVPVYNPMFFNQLYIFLRSSCLYCHHFKMNWLEVNLFKCKLQLIQYGL 129
Query: 126 IVGAKRLDSVLPS 138
++ L+++LPS
Sbjct: 130 LLECVELENILPS 142
>A5DKA8_PICGU (tr|A5DKA8) DNA-directed RNA polymerase OS=Pichia guilliermondii
GN=PGUG_03709 PE=3 SV=2
Length = 1632
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 39/237 (16%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+ +E+R+ S +I++P + D + P+ GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGVLSADEIRRISAKRISNPTVFDNLGHPINGGLYDLALGAFLR-NLCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG- 124
CPGH GHI+L +PVYNPL FN ++ LL+ +C YC HFR++ +V + +L+LI G
Sbjct: 70 KFCPGHQGHIELPTPVYNPLFFNQMYILLRSSCLYCHHFRLNSLEVHRYECKLKLIQYGL 129
Query: 125 ---------------------------DIVGAKRLDSVLPSETLYPEESDGSHESCSTVH 157
++ +K++D L E + E+ +
Sbjct: 130 LLECEELDNMFVNGKSQAESDDDEEDDEVASSKQVDPKLKRELRHRRETFVDTCIAKAIS 189
Query: 158 SGAQCHNGEHMKQKEWTSLQFSEATSVLNTF---LMPKFKKCKNCGAVNPNITKPMF 211
G HNG T+ E ++L+ F L+ + KC NCG +P K F
Sbjct: 190 EGRSSHNGV------VTASVGEERKAILHEFSKRLLSR-PKCDNCGMYSPTFRKDGF 239
>Q759A3_ASHGO (tr|Q759A3) DNA-directed RNA polymerase OS=Ashbya gossypii
GN=ADR374C PE=3 SV=1
Length = 1640
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ FS ++ E+R S +IT+P +LD + P+ GGLYD +LG +C TCG
Sbjct: 11 ISSVDFSVMSAAEIRALSVKQITNPTVLDHLGHPIRGGLYDLSLGAFLRN-LCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
C GH GHI+L P Y+PL FN L+ L+ +C YC HFR+ +V + +L+L+ G
Sbjct: 70 KFCSGHQGHIELPVPCYSPLFFNQLYIYLRSSCLYCHHFRLKAVEVHRYACKLKLLQYGL 129
Query: 126 IVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEA---- 181
I A +LD + T+ SD + E A M+++E+ + ++A
Sbjct: 130 IDEAYKLDDL----TVGGVASDEAEEEGKENDVSAALVAELKMRRREYVDTEIAKALSDG 185
Query: 182 -TSVLNTF----------LMPKFK-------KCKNCGAVNPNITKPMFGWFY 215
TS TF L+ +F KC NCG +P K F +
Sbjct: 186 RTSKYGTFTATVNDERKNLIHEFHKKILARPKCDNCGMFSPKFRKDGFTKIF 237
>B2GUQ2_XENTR (tr|B2GUQ2) DNA-directed RNA polymerase (Fragment) OS=Xenopus
tropicalis GN=LOC100158635 PE=2 SV=1
Length = 1424
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 78/131 (59%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ ++F + EE+RK S +T+P +D + P++ GLYD ALGP +C TC Q
Sbjct: 12 LQGVSFGCYSAEEIRKLSVKALTNPHYMDNLGNPMMNGLYDLALGPADGKEVCSTCAQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NCPGH GHI+L VYNPL F+ L+ L++ +CF+C HR + + QL+++ +G
Sbjct: 72 NNCPGHLGHIELPLTVYNPLFFDKLYLLVRGSCFHCHLLTCHRSVIHLLLNQLKVLDRGA 131
Query: 126 IVGAKRLDSVL 136
+ L++VL
Sbjct: 132 VHEVHELENVL 142
>Q8WZX8_NEUCR (tr|Q8WZX8) DNA-directed RNA polymerase OS=Neurospora crassa
GN=B7K22.060 PE=3 SV=1
Length = 1701
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 56/137 (40%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ S+DS+ F+FLTD E+R S KI + D + PV GGLYDPALG + ++C TC
Sbjct: 8 SSSLDSVEFTFLTDTEIRAVSVRKIENESTFDSLLNPVPGGLYDPALGSWGD-SLCTTCN 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+ CPGH GHI+L PVY+P+ + ++LL+ C YC FR+ R ++ + L L+
Sbjct: 67 LGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCMLRLLQ 126
Query: 123 KGDIVGAKRLDSVLPSE 139
G + A+ +DS SE
Sbjct: 127 CGLLKEAQMIDSFGESE 143
>A4RCX8_MAGGR (tr|A4RCX8) DNA-directed RNA polymerase OS=Magnaporthe grisea
GN=MGG_01158 PE=3 SV=1
Length = 1719
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SIDS++F L+ +E+R S +I + D + PV GGLYDPALG + ++C TC
Sbjct: 8 SSSIDSVSFELLSADEIRAFSVRRIENDSTFDTLLNPVPGGLYDPALGAWGD-SVCATCN 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+ CPGH GHI+L PVY+P+ + + +LL+ C YC FR+ R +++ + L+
Sbjct: 67 LGPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICLFRLLQ 126
Query: 123 KGDIVGAKRLDSV 135
G + AKRLD +
Sbjct: 127 YGLLAEAKRLDLI 139
>B6K3G0_SCHJY (tr|B6K3G0) DNA-directed RNA polymerase OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) GN=SJAG_03144 PE=3
SV=1
Length = 1657
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 11/226 (4%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ I S+ F E++ K S +I +P LLD ++ P GGLYD ALGP + T+C TC
Sbjct: 8 SSEIKSVKFGIFDVEDIEKISVKQIVNPVLLDNLNHPTSGGLYDLALGPYLKNTVCATCH 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
CPGH GHI L P Y+PL F ++ LL+ TC YC HF++ + V + +L+
Sbjct: 68 MDERYCPGHFGHITLPVPAYHPLFFPQMYSLLRATCLYCHHFKLSKVTVHLFACRFKLLD 127
Query: 123 KGDIVGAKRLDSV-----LPSETLYPEESDGSHESCSTVHSGAQCHNGEHMK--QKEWTS 175
G ++ ++R++S+ + S++ ++ +GS S + + + + + E+
Sbjct: 128 HGLLIESQRVESITLGNSVSSKSSGGKDGEGSESEDSGIGNDDMAKDAAALMRLRDEFVD 187
Query: 176 LQFSEATSV--LNTFL--MPKFKKCKNCGAVNPNITKPMFGWFYTV 217
++A + + F + K+C NC + +P K F + V
Sbjct: 188 KCIADAKKIKLVRAFFHAINSRKQCDNCQSFSPTFRKEGFAKIFEV 233
>A3LYS3_PICST (tr|A3LYS3) DNA-directed RNA polymerase OS=Pichia stipitis
GN=RPA190 PE=3 SV=2
Length = 1644
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+D+E+RK S +IT+P + D + P+ GLYD ALG +C TCG
Sbjct: 11 ITSVDFGVLSDDEIRKLSAKQITNPTVFDNLGHPIGSGLYDLALGAFLR-NVCTTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNPL FN L+ LL+ TC YC H +++ +V K L LI G
Sbjct: 70 KFCPGHLGHIELPVPVYNPLFFNQLYILLRSTCLYCHHLKLNALEVHKYKCALRLIQYGL 129
Query: 126 IVGAKRLDSV 135
++ L+++
Sbjct: 130 LLEVVELENM 139
>D5G8D7_9PEZI (tr|D5G8D7) DNA-directed RNA polymerase OS=Tuber melanosporum
GN=GSTUM_00004767001 PE=3 SV=1
Length = 544
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-----DRPVLGGLYDPALGPLSE-GT 56
+ + + F+FL +++ K S ++ +P + V PV+GGLYDPALG
Sbjct: 8 SSEVTGVNFTFLCKDDITKLSVKQVVNPATFETVIPGNVPVPVVGGLYDPALGASDALRQ 67
Query: 57 ICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK 116
C TC CPGH GHI L PVY+PL F+ + K+L+ +C YCFHFR+ R +V++
Sbjct: 68 RCLTCHLDYKYCPGHVGHISLPVPVYHPLFFDQMLKMLRSSCLYCFHFRMARAEVNRFEC 127
Query: 117 QLELIVKGDIVGAKRLDSVLPS------------------ETLYPEESDGSHESCSTVHS 158
+L+LI G +V A LD + P+ E Y + +
Sbjct: 128 KLKLIQYGLLVEAAELDDIHPNTRGEEEGEEGEFSGSTEMEAFYAKREKFVARAIRRHLR 187
Query: 159 GAQCHNGEHMKQKEWTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWFYTV 217
G+ M E E L+T P +KC C A++P K + + V
Sbjct: 188 SGGLDEGKVMSVAEERRKVVKE---FLSTIQFP--RKCNRCQAISPGFRKDGYSKIFEV 241
>B5VSL8_YEAS6 (tr|B5VSL8) DNA-directed RNA polymerase (Fragment) OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=AWRI1631_154900 PE=3
SV=1
Length = 341
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 107/243 (44%), Gaps = 34/243 (13%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLR-NLCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV----LPSETLYPEESDGSHESCSTVHSGAQCH-------NGEHMKQKEWT 174
I + +LD + L S +E+ +E Q N K+ E+
Sbjct: 130 IDESYKLDEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNELKSKRSEYV 189
Query: 175 SLQFSEATSVLNTFLMPKFK----------------------KCKNCGAVNPNITKPMFG 212
+ ++A S T F KC NCG +P K F
Sbjct: 190 DMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFT 249
Query: 213 WFY 215
+
Sbjct: 250 KIF 252
>C8ZH93_YEAS8 (tr|C8ZH93) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse)
GN=EC1118_1O4_5864g PE=3 SV=1
Length = 1664
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LD +
Sbjct: 130 IDESYKLDEI 139
>D1ZA64_SORMA (tr|D1ZA64) DNA-directed RNA polymerase OS=Sordaria macrospora
GN=SMAC_02360 PE=3 SV=1
Length = 1701
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ S+DS+ F FLT+ E+R S KI + D + PV GGLYDPALG + ++C TC
Sbjct: 8 SSSLDSVEFQFLTENEIRAISVRKIENESTFDTLLNPVPGGLYDPALGSWGD-SLCTTCN 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+ CPGH GHI+L PVY+P+ + ++LL+ C YC FR+ R ++ + L L+
Sbjct: 67 LGQSQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRREIHRYSCMLRLLQ 126
Query: 123 KGDIVGAKRLDSVLPSE 139
G + A+ +DS SE
Sbjct: 127 CGLLKEAQMIDSFGESE 143
>C4R1Z5_PICPG (tr|C4R1Z5) DNA-directed RNA polymerase OS=Pichia pastoris (strain
GS115) GN=PAS_chr2-2_0387 PE=3 SV=1
Length = 1640
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I+S+ F LT EE+RK S ++ +P++ D + P+ GGLYD ALG +C TCG
Sbjct: 11 INSVDFEILTTEEIRKLSAKQVVNPQVFDNLGHPIAGGLYDLALGAFLR-NLCGTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L L+ C YC F++ + +V+ +L L+ G
Sbjct: 70 RFCPGHQGHIELPVPCYNPLFFNQLCLFLRSACVYCNRFKLKQSEVNFFACKLRLLQYGL 129
Query: 126 IVGAKRLDSVLPSETLYP----------EESDGSHESCSTVHS-------GAQCHNGEHM 168
++ + LD V L ++ +G S + + G
Sbjct: 130 MLECEELDGVSTGTKLEDIDVDDIDDGNDQGNGDDASLKRLRNEFVETAIATALSEGRTT 189
Query: 169 KQKEWTSLQFSEATSVLNTF---LMPKFKKCKNCGAVNPNITK 208
+Q TS +E +++ +F L+ + KC NCG +P+ K
Sbjct: 190 EQGMTTSTIANERKAIIRSFNSRLLSR-PKCDNCGMYSPSFRK 231
>D6W336_YEAST (tr|D6W336) A190 OS=Saccharomyces cerevisiae S288c GN=RPA190 PE=4
SV=1
Length = 1664
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LD +
Sbjct: 130 IDESYKLDEI 139
>C7GNS5_YEAS2 (tr|C7GNS5) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain JAY291) GN=RPA190 PE=3 SV=1
Length = 1664
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LD +
Sbjct: 130 IDESYKLDEI 139
>A6ZPH1_YEAS7 (tr|A6ZPH1) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain YJM789) GN=RPA190 PE=3 SV=1
Length = 1664
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LD +
Sbjct: 130 IDESYKLDEI 139
>B3LK00_YEAS1 (tr|B3LK00) DNA-directed RNA polymerase OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SCRG_01718 PE=3 SV=1
Length = 1664
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F LT +E+R S +IT+P +LD + PV GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRN-LCSTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V + +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
I + +LD +
Sbjct: 130 IDESYKLDEI 139
>B9W974_CANDC (tr|B9W974) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
GN=CD36_10000 PE=3 SV=1
Length = 1656
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+DEE+RK S +IT+P + D + P+ GGLYD +LG +C TCG
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR-NVCTTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNP+ FN L+ L+ C YC F++++ +V +L LI G
Sbjct: 70 KFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGL 129
Query: 126 IVGAKRLDSVL 136
++ LD+++
Sbjct: 130 LLECVELDNIM 140
>Q59LW3_CANAL (tr|Q59LW3) DNA-directed RNA polymerase OS=Candida albicans
GN=RPA190 PE=3 SV=1
Length = 1665
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 79/131 (60%), Gaps = 1/131 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+DEE+RK S +IT+P + D + P+ GGLYD +LG +C TCG
Sbjct: 11 ITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLR-NVCTTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNP+ FN L+ L+ C YC F++++ +V +L LI G
Sbjct: 70 KFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQYGL 129
Query: 126 IVGAKRLDSVL 136
++ LD+++
Sbjct: 130 LLECVELDNIM 140
>Q6CIX4_KLULA (tr|Q6CIX4) DNA-directed RNA polymerase OS=Kluyveromyces lactis
GN=KLLA0F23243g PE=3 SV=1
Length = 1653
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI FS LT +E+RK S ++T+P +LD + P+ GGLYD ALG + +C TCG
Sbjct: 11 ITSIDFSVLTSDEIRKLSAKQVTNPTVLDNLGHPIQGGLYDLALGAFLKN-LCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQV 111
CPGH GHI+L P YNPL FN L+ L+ +C +C HFR+ +V
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFNQLYIYLRSSCLFCHHFRLKSSEV 115
>C3ZBW5_BRAFL (tr|C3ZBW5) DNA-directed RNA polymerase OS=Branchiostoma floridae
GN=BRAFLDRAFT_201044 PE=3 SV=1
Length = 1731
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNC 68
+ FS + EE+ + S ++T+P+ D + P GGLYDPALGP +C TC Q +C
Sbjct: 14 VQFSTYSAEEICRLSVKEVTNPQTFDNLLHPTTGGLYDPALGPTDRDDLCGTCAQNYLHC 73
Query: 69 PGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVG 128
PGH GH++L PV+NPL L+++L+ +CFYC + Q QL+ + G +
Sbjct: 74 PGHMGHVNLPLPVFNPLFLRLLYQMLRGSCFYCHRLMCPKIQAQLITSQLKALDHGMVQM 133
Query: 129 AKRLDSVLPSETLYPEESDGSHESCS 154
++L VL + EE D + S
Sbjct: 134 VEKLHEVLSG--ILEEEGDADDDYIS 157
>C5LXY1_9ALVE (tr|C5LXY1) DNA-directed RNA polymerase OS=Perkinsus marinus ATCC
50983 GN=Pmar_PMAR013657 PE=3 SV=1
Length = 1775
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLL-DLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
SI + F +++ +E++ S +IT+ +L P+ GLYDPALGPL G +CKTCG
Sbjct: 14 SIHDVQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPLHIGDLCKTCGL 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+ +CPGH GHI L + VYNP L L+ +L+R C C HFR+ + + + +LI+
Sbjct: 74 GVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVRKAVTQRYCDRFKLILA 133
Query: 124 G 124
G
Sbjct: 134 G 134
>Q23DD6_TETTH (tr|Q23DD6) DNA-directed RNA polymerase OS=Tetrahymena thermophila
SB210 GN=TTHERM_00047550 PE=3 SV=1
Length = 1727
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 75/130 (57%), Gaps = 2/130 (1%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALG--PLSEGTICKT 60
+ + + FS+ T +E+RK S +IT+P D ++RP+ GGLYDP +G P + T C+T
Sbjct: 13 SRRLAGVGFSYYTADEIRKLSVKEITNPIAFDSLNRPIKGGLYDPCMGVSPYDKFTRCET 72
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CG CPGH GH++L+ PVYNP L + L KLL+ C C FR+ ++ L
Sbjct: 73 CGCEGLECPGHMGHVELLLPVYNPFLIDKLLKLLRAQCLKCNKFRMTNQKLKMFANVFTL 132
Query: 121 IVKGDIVGAK 130
I G I AK
Sbjct: 133 IKLGYIFEAK 142
>C5KZW7_9ALVE (tr|C5KZW7) DNA-directed RNA polymerase OS=Perkinsus marinus ATCC
50983 GN=Pmar_PMAR018466 PE=3 SV=1
Length = 1774
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLL-DLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
SI + F +++ +E++ S +IT+ +L P+ GLYDPALGPL G +CKTCG
Sbjct: 14 SIHDVQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPLHIGDLCKTCGL 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+ +CPGH GHI L + VYNP L L+ +L+R C C HFR+ + + +LI+
Sbjct: 74 GVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVREAVTQRYCDRFKLILA 133
Query: 124 G 124
G
Sbjct: 134 G 134
>C5KJT2_9ALVE (tr|C5KJT2) DNA-directed RNA polymerase OS=Perkinsus marinus ATCC
50983 GN=Pmar_PMAR006919 PE=3 SV=1
Length = 190
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLL-DLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
SI + F +++ +E++ S +IT+ +L P+ GLYDPALGPL G +CKTCG
Sbjct: 14 SIHDVQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPLHIGDLCKTCGL 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+ +CPGH GHI L + VYNP L L+ +L+R C C HFR+ + + + +LI+
Sbjct: 74 GVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVRKAVTQRYCDRFKLILA 133
Query: 124 G 124
G
Sbjct: 134 G 134
>C7YZ78_NECH7 (tr|C7YZ78) DNA-directed RNA polymerase OS=Nectria haematococca
(strain 77-13-4 / FGSC 9596 / MPVI) GN=NECHADRAFT_47608
PE=3 SV=1
Length = 1674
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 30/231 (12%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
++S+ F+FL+ +E+R S +I + D + PV GGLYDPALG + C TC
Sbjct: 11 VESVEFTFLSPKEIRSISVKRIENDSTFDNLLNPVPGGLYDPALGSWGDAP-CTTCNLNQ 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG- 124
+ CPGH GHI L PVY+P+ + ++LL+ C YC FR+ + ++ K V +L+L+ G
Sbjct: 70 STCPGHAGHIQLPVPVYHPVFMDQAYRLLKAACVYCKGFRLPQKELHKYVCKLKLLQHGL 129
Query: 125 ----DIVGAKRLD---------SVLPSETLYPEESDGSHESCSTVHSGA-----QCHNGE 166
IVGA + S L SE E +G S V +C G
Sbjct: 130 IQEAHIVGAIGENDLAIELGDFSGLESEA----EEEGDSNSIDNVTRARDRYVDKCLRGI 185
Query: 167 HMKQKEWTSLQFSEATS----VLNTFL--MPKFKKCKNCGAVNPNITKPMF 211
+K+ E + A+ ++ FL + K + C +CG ++P+ K F
Sbjct: 186 KVKRGETKRGKHEGASEMRRDIIKEFLAEITKRRICASCGGISPSYRKDRF 236
>Q8BR29_MOUSE (tr|Q8BR29) DNA-directed RNA polymerase OS=Mus musculus GN=Polr1a
PE=2 SV=1
Length = 262
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>B5RT96_DEBHA (tr|B5RT96) DNA-directed RNA polymerase OS=Debaryomyces hansenii
GN=DEHA2C10670g PE=3 SV=1
Length = 1644
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 1/131 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F L+ +E+R+ S +IT+P + D + P+ GLYD ALG +C TCG
Sbjct: 11 ITSVDFGVLSADEIRRLSAKQITNPTVFDNLGHPISSGLYDLALGAFLR-NLCTTCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PVYNPL FN L+ L+ +C YC +FR + +V + +L LI G
Sbjct: 70 KFCPGHQGHIELPVPVYNPLFFNQLYIFLRSSCLYCHNFRYNSLEVHRYECKLRLIQYGL 129
Query: 126 IVGAKRLDSVL 136
++ LD++L
Sbjct: 130 LLECIELDNML 140
>Q80Y46_MOUSE (tr|Q80Y46) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1366
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q8BNM6_MOUSE (tr|Q8BNM6) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1424
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q05BP7_MOUSE (tr|Q05BP7) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1366
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q3TU49_MOUSE (tr|Q3TU49) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1361
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q05DK4_MOUSE (tr|Q05DK4) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1366
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q3UHI3_MOUSE (tr|Q3UHI3) DNA-directed RNA polymerase OS=Mus musculus GN=Polr1a
PE=2 SV=1
Length = 1717
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q3TUG2_MOUSE (tr|Q3TUG2) DNA-directed RNA polymerase (Fragment) OS=Mus musculus
GN=Polr1a PE=2 SV=1
Length = 1424
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR +D + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 NNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>Q2GP10_CHAGB (tr|Q2GP10) DNA-directed RNA polymerase OS=Chaetomium globosum
GN=CHGG_10294 PE=3 SV=1
Length = 1475
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 96/178 (53%), Gaps = 14/178 (7%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
S++S+ F+FLT EE+R S +I + D + P+ GGLYDPALG + +C TC
Sbjct: 10 SLESVEFTFLTAEEIRSISVKRIENDSTFDNLLNPIPGGLYDPALGSWGDA-LCLTCNLN 68
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKC-----VKQLE 119
CPGH GHI+L PVY+P+ + ++LL+ C YC FR+ R ++ K V Q+
Sbjct: 69 QAQCPGHPGHIELPVPVYHPVFMDQAYRLLRAQCVYCHRFRLPRHEIHKYTCMFRVVQVG 128
Query: 120 LIVKGDIVGA-------KRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQ 170
LI + ++ + ++L ++ S+ PE+ D + E +H G +++Q
Sbjct: 129 LIHEAHMIESFSVSDLGEQLRNLTLSDVPNPEQ-DEAEEEGGNLHDGTMRARETYVRQ 185
>C5DV78_ZYGRC (tr|C5DV78) DNA-directed RNA polymerase OS=Zygosaccharomyces rouxii
(strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 /
NCYC 568) GN=ZYRO0D04532g PE=3 SV=1
Length = 1667
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F+ + EE+R S +IT+P +LD + P+ GGLYD ALG +C TCG
Sbjct: 11 ISSVDFNVFSAEEIRNLSAKQITNPTVLDNLGHPISGGLYDLALGAFLR-NLCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL F+ L+ L+ +C YC FR+ +V++ +L L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFSQLYIYLRSSCLYCHRFRLRSIEVNRFACKLRLLQYGL 129
Query: 126 IVGAKRLDSV 135
+ + +LD +
Sbjct: 130 VEESYQLDQL 139
>C5DG15_LACTC (tr|C5DG15) DNA-directed RNA polymerase OS=Lachancea thermotolerans
(strain CBS 6340) GN=KLTH0D01628g PE=3 SV=1
Length = 1654
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F +T +++R S ++IT+P +LD + P+ GGLYD ALG +C TCG
Sbjct: 11 ITSVDFGVMTAQDIRNFSAMQITNPTVLDNLGHPISGGLYDLALGAFLRN-LCATCGLDE 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L P YNPL F+ L+ L+ +C YC FR+ +V + +L+L+ G
Sbjct: 70 KFCPGHQGHIELPVPCYNPLFFSQLYIFLRSSCLYCHGFRLKASEVHRYACKLKLLQYGL 129
Query: 126 IVGAKRLDSV 135
I +LD +
Sbjct: 130 IDECYKLDEL 139
>C9SE91_VERA1 (tr|C9SE91) DNA-directed RNA polymerase OS=Verticillium albo-atrum
(strain VaMs.102) GN=VDBG_03424 PE=3 SV=1
Length = 1686
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ +++++ F+FLT+ E+R S +I + D + PV GGLYDPALG + +IC TC
Sbjct: 8 SSTVETVEFTFLTETEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSWGD-SICSTCN 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
++CPGH GHI+L PVY+P+ + + +LL+ C YC R+ + V +L L+
Sbjct: 67 LNQSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSCKLRLLQ 126
Query: 123 KGDIVGAKRLDSV 135
G + A +D+V
Sbjct: 127 HGLLRAAHLIDAV 139
>C5FC46_NANOT (tr|C5FC46) DNA-directed RNA polymerase OS=Nannizzia otae (strain
CBS 113480) GN=MCYG_00357 PE=3 SV=1
Length = 1680
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI I F ++DEE++ S +I + LD + PV GGLYD ALG + IC TC
Sbjct: 9 SSSIGGIDFGVMSDEEIKAVSVKRIYNTPSLDSFNNPVPGGLYDAALGAWGD-HICSTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
Q +C GH GHI+L VYN F+ L++LL+ C YC FR+ R Q++ +L L+
Sbjct: 68 QNSWSCAGHAGHIELPVHVYNVTFFDQLYRLLRSQCIYCHRFRMARAQINNYACKLRLLQ 127
Query: 123 KGDI 126
G I
Sbjct: 128 YGLI 131
>B2VT60_PYRTR (tr|B2VT60) DNA-directed RNA polymerase OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=PTRG_01896 PE=3
SV=1
Length = 1790
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ +I+ + F FLT ++++ S +I+ P D ++ PV GGL+DPALG + C TCG
Sbjct: 8 SSAINGVEFGFLTTKDIKALSVKRISIPTTFDSINHPVPGGLHDPALGAFLDNP-CATCG 66
Query: 63 -QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
CPGHCGHI+L PVY+ + L +LL+ TC YC H ++ R +++ V +L LI
Sbjct: 67 LTTFLGCPGHCGHIELPVPVYHLTFMDQLLRLLRGTCAYCHHTKLARTTINEFVSKLRLI 126
>C5KQT5_9ALVE (tr|C5KQT5) DNA-directed RNA polymerase OS=Perkinsus marinus ATCC
50983 GN=Pmar_PMAR020772 PE=3 SV=1
Length = 123
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLL-DLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
SI + F +++ +E++ S +IT+ +L P+ GLYDPALGPL G +CKTCG
Sbjct: 14 SIHDVQFMYMSPKEIQDISVKEITEVAAFGNLAGAPLPDGLYDPALGPLHIGDLCKTCGL 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDK 113
+ +CPGH GHI L + VYNP L L+ +L+R C C HFR+ + +
Sbjct: 74 GVHDCPGHLGHIKLATDVYNPFLIRTLYNVLRRMCTSCNHFRVRKAVTQR 123
>Q7SXQ2_DANRE (tr|Q7SXQ2) DNA-directed RNA polymerase (Fragment) OS=Danio rerio
GN=polr1a PE=2 SV=1
Length = 810
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 63/106 (59%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
++ ++F + +E RK S IT+P+LLD V GLYD ALGP IC TC Q
Sbjct: 12 LEGMSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQV 111
++CPGH GHI+L PVYNPL F+ L+ L++ +C C + R +
Sbjct: 72 SSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSCHTLKCPRAAI 117
>Q6C1S4_YARLI (tr|Q6C1S4) DNA-directed RNA polymerase OS=Yarrowia lipolytica
GN=YALI0F13783g PE=3 SV=1
Length = 1628
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I + F + EE+ + S +IT+P D + P+ GGLYDP LG C TC
Sbjct: 13 ITRVDFGLYSPEEILQLSVTQITNPTTFDALGNPISGGLYDPKLGAFLRNN-CATCNLDN 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
C GH GHI+L PVYNPL F L LL+ C +C HFR + +V K +L L+ G
Sbjct: 72 RFCQGHPGHIELPMPVYNPLFFTQLWVLLRAACRFCGHFRTSKAEVHKIYCKLRLLQYGL 131
Query: 126 IVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEA 181
+ A +D++ ++ E D + ++ A + +Q ++T +EA
Sbjct: 132 VGAAAEIDNI---KSFMKESDDDVVQDDASASVDAAVMD----RQSKFTEKTIAEA 180
>Q16K29_AEDAE (tr|Q16K29) DNA-directed RNA polymerase OS=Aedes aegypti
GN=AAEL013134 PE=3 SV=1
Length = 1686
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 72/136 (52%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
++ FS + E++++ S KI R D + + GGLYD A+GP +G +C TC + +
Sbjct: 15 NLQFSVFSSEDIKRISVTKIVTQRSFDELGHAIPGGLYDAAMGPSGKGEVCATCVKDMNQ 74
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIV 127
C GH GHI++ PV+NP ++ LL+ C CF +IH QL+L+ G IV
Sbjct: 75 CEGHFGHIEICVPVFNPFFVKTVYNLLRICCTDCFRLQIHDSMKSLLELQLQLVDAGYIV 134
Query: 128 GAKRLDSVLPSETLYP 143
A+ L+ L P
Sbjct: 135 EAEELEVFKQKVALAP 150
>C4V709_NOSCE (tr|C4V709) DNA-directed RNA polymerase OS=Nosema ceranae (strain
BRL01) GN=NCER_100217 PE=3 SV=1
Length = 1079
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 60/100 (60%)
Query: 7 DSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLT 66
D I+F+F DEE+ K S ++IT P LD P GLYD +GP + ++CKTC
Sbjct: 8 DKISFTFYKDEEIIKMSVLEITQPLCLDTFGHPFPDGLYDARMGPFNNDSLCKTCNLSYL 67
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
CPGH G+I L PV+NPLLF+ ++ +L+ C C +I
Sbjct: 68 TCPGHFGYIKLFKPVFNPLLFSTMYSVLKSACHKCGLLKI 107
>O17628_CAEEL (tr|O17628) DNA-directed RNA polymerase OS=Caenorhabditis elegans
GN=Y48E1A.1 PE=2 SV=3
Length = 1737
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 64/115 (55%), Gaps = 16/115 (13%)
Query: 18 EVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDL 77
E+ K S +KIT + D V P+ GGLYDP LGP + +C TC Q +CPGH GHI L
Sbjct: 27 EIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQL 86
Query: 78 VSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVGAKRL 132
PV+NPLLF F + LL+ +C +C HR L KGD V A+ L
Sbjct: 87 AVPVFNPLLFQFTYNLLKGSCVHC-----HR-----------LTCKGDGVNARML 125
>D2A5Z9_TRICA (tr|D2A5Z9) DNA-directed RNA polymerase OS=Tribolium castaneum
GN=GLEAN_15082 PE=3 SV=1
Length = 1619
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGT-ICKTCGQ 63
S DS+ FS T EE++K KI P LD + P+ GGLYD +LGP++E + C TC +
Sbjct: 16 SFDSVVFSMFTKEEIKKLCITKICTPLTLDPLGHPLSGGLYDKSLGPMTEKSEPCGTCRK 75
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
L CPGH G+I+L PV NP+ + + +L+ C CF F+I
Sbjct: 76 NLYFCPGHFGYIELPLPVVNPIFYRMIGTILRMACLSCFRFQI 118
>Q5KIF6_CRYNE (tr|Q5KIF6) DNA-directed RNA polymerase OS=Cryptococcus neoformans
GN=CNBD3210 PE=3 SV=1
Length = 1727
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%)
Query: 17 EEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHID 76
++++ S K+ +P LLD ++ P GGLYDP LGP+ +C+TC CPGH GHI+
Sbjct: 22 DDIKAISVKKVDNPILLDNLNLPTRGGLYDPKLGPMGSRDLCETCHLSYFACPGHFGHIE 81
Query: 77 LVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
L +PVY+PL N + LL+ C YC HF++ V +L L+ G
Sbjct: 82 LPTPVYHPLFMNQCYHLLRGVCLYCHHFKMPEIVATSYVARLRLLDAG 129
>Q8UVY7_XENLA (tr|Q8UVY7) DNA-directed RNA polymerase OS=Xenopus laevis GN=polr1a
PE=2 SV=1
Length = 1730
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ SI+F + EE+RK S +T+PR +D + P++ GL+D A GP +C +C Q
Sbjct: 12 LQSISFGCYSAEEIRKLSVKALTNPRYMDSLGNPLMNGLHDLAQGPADGKEVCSSCFQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
T+CPGH GHI+L VYNPL F+ L+ L++ +CF+C
Sbjct: 72 TSCPGHLGHIELPLTVYNPLFFDKLYFLVRGSCFHC 107
>C0S421_PARBP (tr|C0S421) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb03) GN=PABG_02435 PE=3 SV=1
Length = 1691
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F L+DEE++ S +I + LD ++ PV GGLYDPALG + IC TC
Sbjct: 11 SIGEIDFGVLSDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGD-HICTTCRLN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R V ++ L+ G
Sbjct: 70 SWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACKMRLLQYG 129
Query: 125 DIVGAKRLDSV 135
I A +D +
Sbjct: 130 LIEEAAAIDGM 140
>C1FYI4_PARBD (tr|C1FYI4) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain Pb18) GN=PADG_00860 PE=3 SV=1
Length = 1691
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F L+DEE++ S +I + LD ++ PV GGLYDPALG + IC TC
Sbjct: 11 SIGEIDFGVLSDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGD-HICTTCRLN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R V ++ L+ G
Sbjct: 70 SWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDVKSYACKMRLLQYG 129
Query: 125 DIVGAKRLDSV 135
I A +D +
Sbjct: 130 LIEEAAAIDGM 140
>A1D226_NEOFI (tr|A1D226) DNA-directed RNA polymerase OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=NFIA_011570 PE=3 SV=1
Length = 1681
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F +DE+++ S +I + LD + PV GGLYDPALG + +C TC Q
Sbjct: 11 SISGIEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HVCTTCRQN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L++LL+ C YC F++ R Q++ V +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMSRVQINAYVCKLRLLQYG 129
>B0XRP3_ASPFC (tr|B0XRP3) DNA-directed RNA polymerase OS=Aspergillus fumigatus
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_013390
PE=3 SV=1
Length = 1680
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F +DE+++ S +I + LD + PV GGLYDPALG + +C TC Q
Sbjct: 11 SISGIEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HVCTTCRQN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L++LL+ C YC F++ R Q++ V +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCKLRLLQYG 129
>Q4WS60_ASPFU (tr|Q4WS60) DNA-directed RNA polymerase OS=Aspergillus fumigatus
GN=AFUA_1G13900 PE=3 SV=1
Length = 1680
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 70/120 (58%), Gaps = 1/120 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F +DE+++ S +I + LD + PV GGLYDPALG + +C TC Q
Sbjct: 11 SISGIEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HVCTTCRQN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L++LL+ C YC F++ R Q++ V +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARVQINAYVCKLRLLQYG 129
>B3S2I6_TRIAD (tr|B3S2I6) DNA-directed RNA polymerase OS=Trichoplax adhaerens
GN=TRIADDRAFT_27970 PE=3 SV=1
Length = 1724
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 67/117 (57%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
++ FS T E++RK S +IT+ D + GGL DPALGP+ + C TCGQ +
Sbjct: 16 AVRFSTYTSEDIRKLSVKQITNVHTFDRLMNANHGGLCDPALGPIETLSPCSTCGQIMDY 75
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
CPGH GHIDL PVY+PL F + LL+ CF C H ++ V QL+L+ G
Sbjct: 76 CPGHFGHIDLHLPVYHPLFFKHMLMLLKGMCFQCHHLHGTPAALNLFVCQLKLLEYG 132
>C1GUK2_PARBA (tr|C1GUK2) DNA-directed RNA polymerase OS=Paracoccidioides
brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_02197
PE=3 SV=1
Length = 1691
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F L+DEE++ S +I + LD ++ PV GGLYDPALG + +C TC
Sbjct: 11 SIGEIDFGVLSDEEIKTISIKRIYNTPALDSLNNPVPGGLYDPALGAWGD-HVCTTCRLN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + ++ L+ G
Sbjct: 70 SWSCNGHSGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRVDIKSYACKMRLLQYG 129
Query: 125 DIVGAKRLDSV 135
I A +D +
Sbjct: 130 LIEEAAAIDGM 140
>Q8C2X2_MOUSE (tr|Q8C2X2) DNA-directed RNA polymerase OS=Mus musculus GN=Polr1a
PE=2 SV=1
Length = 1012
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G S ++ + + +K S IT+PR +D + P GLYD ALGP +C T
Sbjct: 29 GYRASYSTVPLNKVKKPCTKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCAT 88
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
C Q NC GH GHIDL VYNP LF+ L+ LL+ +C C R + + QL +
Sbjct: 89 CVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRV 148
Query: 121 IVKGDIVGAKRLDSVLPSETLYPEES 146
+ G + L+ +L +++ EE+
Sbjct: 149 LEVGALQAVYELERIL---SMFLEET 171
>B7S4C1_PHATR (tr|B7S4C1) DNA-directed RNA polymerase OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_bd955 PE=3 SV=1
Length = 1674
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 19/229 (8%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTI-CKTCGQR 64
I+ + F F D++VR S V+IT + D + P+ GLYD LGPL + C TC R
Sbjct: 19 IEKVQFGFYNDDDVRARSVVEITSSQAFDPTNSPLPNGLYDVRLGPLKDSEPPCPTCALR 78
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
++CPGH GHI+L PVY+PLLF L +LL+ CF C + + + L+ +
Sbjct: 79 ASHCPGHFGHIELAVPVYHPLLFPDLLQLLRIKCFACHKLKAPSRTLATLRAKFHLLYRH 138
Query: 125 DIVGAKRLDSVLPSETLYPEES--DGSHESCSTVHSGAQCHNG--EHMKQKEWTSLQFSE 180
D+ LD L S D + S + + S + + ++ + + S
Sbjct: 139 DLTRLTALDRELLVAIRLGRTSGEDRAENSTAKIRSAKDVADALDKVLRSHQPPTDSTSP 198
Query: 181 ATSVLNTFLM--------------PKFKKCKNCGAVNPNITKPMFGWFY 215
+T+ LN+F K+C +CGA NP I + F +
Sbjct: 199 STTKLNSFERNLRKELAKAVLTACKGVKRCAHCGAYNPKIRQDSFNKLF 247
>Q8SS15_ENCCU (tr|Q8SS15) DNA-directed RNA polymerase OS=Encephalitozoon cuniculi
GN=ECU04_1400 PE=3 SV=1
Length = 1395
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
+I+F +DEE+ ++S +++ P D P+ GGLYD +GPL + CKTC N
Sbjct: 9 NISFGSYSDEEIERNSCMEVVVPGCFDKFGHPIRGGLYDLRMGPLDLSSNCKTCNLSFLN 68
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK--QLELIVKGD 125
CPGH GHI L V NP+ F+ L +++ CF C HFRI D+ + + L++ G+
Sbjct: 69 CPGHFGHIKLSRIVLNPMFFDSLFSIVRCYCFQCKHFRI--TNYDRLILFCKFSLLLNGE 126
Query: 126 IV-GAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEATSV 184
RL V E LY S+ E+ K+ L S V
Sbjct: 127 EAEDLDRLYMVSEEEELYKIVSE----------------RIENAKKNRSEPLMESH-QEV 169
Query: 185 LNTFLMP--KFKKCKNCGAVNPNITK 208
++ FL +KC CG NP I K
Sbjct: 170 VHRFLQNAGSRRKCVRCGHSNPKIVK 195
>A6R8S3_AJECN (tr|A6R8S3) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain NAm1 / WU24) GN=HCAG_06714 PE=3 SV=1
Length = 1573
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI+ + F L++EE++ S I + LD ++ PV GGLYDPALG + IC TC
Sbjct: 9 SSSIEGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGD-HICTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + +L L+
Sbjct: 68 LNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQ 127
Query: 123 KGDIVGAKRLDSV 135
G + A +DS+
Sbjct: 128 YGLVEEAAAIDSM 140
>C0NL49_AJECG (tr|C0NL49) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain ATCC 26029 / G186AR / H82 / RMSCC 2432)
GN=HCBG_03879 PE=3 SV=1
Length = 1697
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI+ + F L++EE++ S I + LD ++ PV GGLYDPALG + IC TC
Sbjct: 9 SSSIEGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGD-HICTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + +L L+
Sbjct: 68 LNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQ 127
Query: 123 KGDIVGAKRLDSV 135
G + A +DS+
Sbjct: 128 YGLVEEAAAIDSM 140
>B0E6R8_ENTDI (tr|B0E6R8) DNA-directed RNA polymerase OS=Entamoeba dispar SAW760
GN=EDI_169920 PE=3 SV=1
Length = 1619
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
T+ + I F+ L+ E++RK KIT+ L++ +PVLGGL DP +GP +G C+TC
Sbjct: 8 TKRVKQIKFTLLSSEQIRKMGVCKITESTLVNSDGKPVLGGLADPRMGPFEKGEECQTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK 116
T CPGH G+I+L PVYN + ++ ++L+ C C H + K +K
Sbjct: 68 GTRTECPGHFGYIELTQPVYNAIYMKYILQVLKCVCPICKRIYCHGDERIKNIK 121
>C6HCI4_AJECH (tr|C6HCI4) DNA-directed RNA polymerase OS=Ajellomyces capsulata
(strain H143) GN=HCDG_03733 PE=3 SV=1
Length = 1676
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI+ + F L++EE++ S I + LD ++ PV GGLYDPALG + IC TC
Sbjct: 9 SSSIEGVDFRVLSNEEIKTISVKLIYNTPTLDSLNNPVPGGLYDPALGAWGD-HICTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + +L L+
Sbjct: 68 LNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFRMSRADIMSYTCKLRLLQ 127
Query: 123 KGDIVGAKRLDSV 135
G + A +DS+
Sbjct: 128 YGLVEEAAAIDSM 140
>B6YT16_THEON (tr|B6YT16) Subunit A' of DNA-dependent RNA polymerase
OS=Thermococcus onnurineus (strain NA1) GN=TON_0218 PE=4
SV=1
Length = 905
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P D P+ GGL D LG + G C+TCG R
Sbjct: 8 IGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+CPGH GH++L P+ + +H++L+ TC C ++ ++D+ +K+ E V GD
Sbjct: 68 GDCPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTDEEIDEYMKKFE--VMGD 125
Query: 126 IVGAK 130
AK
Sbjct: 126 RKKAK 130
>A1CP71_ASPCL (tr|A1CP71) DNA-directed RNA polymerase OS=Aspergillus clavatus
GN=ACLA_021560 PE=3 SV=1
Length = 1734
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F +DE+++ S +I + LD + PV GGLYDPALG + +C TC Q
Sbjct: 64 SIAGIDFGVYSDEDIKGISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HVCATCRQN 122
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L +LL+ C YC F++ R QV+ V +L L+ G
Sbjct: 123 AWSCTGHPGHIELPVHVYNVTFFDQLFRLLRAQCVYCHRFQMPRVQVNAYVCKLRLLQYG 182
Query: 125 --DIVG 128
D VG
Sbjct: 183 LVDEVG 188
>D0KRS2_SULS9 (tr|D0KRS2) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
solfataricus (strain 98/2) GN=Ssol_1203 PE=4 SV=1
Length = 880
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/131 (35%), Positives = 69/131 (52%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TC
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTC 61
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L NCPGH GHI+LV PV + L +++ L+ TC C +I +++K + I
Sbjct: 62 GNTLGNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 122 VKGDIVGAKRL 132
K A+RL
Sbjct: 122 KKRWPSAARRL 132
>C5PA97_COCP7 (tr|C5PA97) DNA-directed RNA polymerase OS=Coccidioides posadasii
(strain C735) GN=CPC735_008320 PE=3 SV=1
Length = 1690
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ +I + F L+D E++ S +I + LD + PV GGLYDPALG + IC TC
Sbjct: 9 SSTISGVDFEVLSDNEIKSVSVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HICTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ + Q++ V +L L+
Sbjct: 68 LNAWSCAGHSGHIELPVHVYNVTFFDQLFRLLKAQCIYCHRFRMSKIQINTYVCKLRLLQ 127
Query: 123 KG 124
G
Sbjct: 128 YG 129
>A1RWW5_THEPD (tr|A1RWW5) DNA-directed RNA polymerase, subunit A' OS=Thermofilum
pendens (strain Hrk 5) GN=Tpen_0285 PE=4 SV=1
Length = 888
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I F L+ E +RK + ++I L D P+ GGL D +G + G +C+TCG R
Sbjct: 10 VAGIKFGILSPEMIRKIAVLRIETSELYDEEGFPIPGGLMDRRMGSIEPGAVCQTCGNRF 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
TNCPGH G+I+L PV +P ++ LL+ TC C ++ +++K K++E+
Sbjct: 70 TNCPGHFGYIELARPVIHPSFAPYIAILLKATCNRCGRLKLPEEKINKAKKRMEV 124
>A9A460_NITMS (tr|A9A460) DNA-directed RNA polymerase subunit A'
OS=Nitrosopumilus maritimus (strain SCM1) GN=Nmar_0348
PE=4 SV=1
Length = 1263
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 58/105 (55%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
A ++ID I FS + E+RK+S +IT P D PV GGL D LG L G C TC
Sbjct: 5 AVKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQKCLTC 64
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
G CPGH GH++L PV + + ++KLLQ TC C ++
Sbjct: 65 GNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKV 109
>C5JKG0_AJEDS (tr|C5JKG0) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain SLH14081) GN=BDBG_03013 PE=3 SV=1
Length = 1645
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI + F L+++E++ S +I + LD ++ PV GGLYDPALG + +C TC
Sbjct: 9 SSSIGEVDFGVLSNDEIKSISVKRIYNTPTLDTLNNPVPGGLYDPALGAWGD-HVCTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + +L L+
Sbjct: 68 LNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCKLRLLQ 127
Query: 123 KGDIVGAKRLDSV 135
G + A +D++
Sbjct: 128 YGLVEEAAAIDNM 140
>C5G7Q4_AJEDR (tr|C5G7Q4) DNA-directed RNA polymerase OS=Ajellomyces dermatitidis
(strain ER-3) GN=BDCG_01010 PE=3 SV=1
Length = 1646
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ SI + F L+++E++ S +I + LD ++ PV GGLYDPALG + +C TC
Sbjct: 9 SSSIGEVDFGVLSNDEIKSISVKRIYNTPTLDTLNNPVPGGLYDPALGAWGD-HVCTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GHI+L VYN F+ L +LL+ C YC FR+ R + +L L+
Sbjct: 68 LNSWSCNGHAGHIELPVHVYNVTFFDQLFRLLRAQCAYCHRFRMSRADIKSYTCKLRLLQ 127
Query: 123 KGDIVGAKRLDSV 135
G + A +D++
Sbjct: 128 YGLVEEAAAIDNM 140
>B5IVZ9_9EURY (tr|B5IVZ9) DNA-directed RNA polymerase subunit A' OS=Thermococcus
barophilus MP GN=TERMP_16 PE=4 SV=1
Length = 906
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 67/116 (57%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P D P+ GGL D LG + G C+TCG R
Sbjct: 8 IGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARY 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
+CPGH GHI+L PV + ++++L+ TC C ++ ++++ +K+ ELI
Sbjct: 68 GDCPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKFELI 123
>A9UY22_MONBE (tr|A9UY22) DNA-directed RNA polymerase (Fragment) OS=Monosiga
brevicollis GN=16642 PE=3 SV=1
Length = 1592
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 21/217 (9%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ ++F D R+ S I+ D ++ P++GGLYDPALGP+ C TC
Sbjct: 2 VRGVSFGMFDDATTRRLSVKGISHADGFDELNNPMIGGLYDPALGPVDNSERCTTCHLLG 61
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
T+CPGH GHI+L VY+PL F L++LL+ C C F+ + QL+L+ +
Sbjct: 62 THCPGHMGHIELPVHVYHPLFFQQLYQLLRAKCRLCHKFKAGDVPLQLLQHQLDLLARDA 121
Query: 126 IVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEATSVL 185
+V A+ L+ L L +E E + + + M++ Q SE +
Sbjct: 122 LVEARNLEDALDLPRLPSDEGQDPSEGPEHLRAAFEASMARVMER------QASERPNPA 175
Query: 186 NTFLMPKFKK---------------CKNCGAVNPNIT 207
N+ + K+++ C +CGA + +T
Sbjct: 176 NSIHVAKYRRELIEAFLKNTVNIKSCAHCGAASRRLT 212
>Q5JE33_PYRKO (tr|Q5JE33) DNA-directed RNA polymerase, subunit A' OS=Pyrococcus
kodakaraensis GN=TK1082 PE=4 SV=1
Length = 906
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P D P+ GGL D LG + G C+TCG R
Sbjct: 8 IGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PV + +H++L+ TC C ++ ++++ +++ E V GD
Sbjct: 68 GECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFE--VMGD 125
Query: 126 IVGA 129
GA
Sbjct: 126 RKGA 129
>Q9V114_PYRAB (tr|Q9V114) RpoA1 DNA-directed RNA polymerase, subunit A'
OS=Pyrococcus abyssi GN=rpoA1 PE=4 SV=1
Length = 907
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 67/115 (58%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S V++T P D P+ GG+ D +G + G C+TCG +
Sbjct: 8 IGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CPGH GHI+L PV + +H++L+ TC C ++ ++++ +K+LEL
Sbjct: 68 GECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLEL 122
>O59227_PYRHO (tr|O59227) 907aa long hypothetical DNA-directed RNA polymerase
subunit A' OS=Pyrococcus horikoshii GN=PH1545 PE=4 SV=1
Length = 907
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/115 (36%), Positives = 67/115 (58%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S V++T P D P+ GG+ D +G + G C+TCG +
Sbjct: 8 IGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGAKA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CPGH GHI+L PV + +H++L+ TC C ++ ++++ +K+LEL
Sbjct: 68 GECPGHFGHIELARPVIHVGFAKTIHRILESTCRECGRIKLTDEEIEEYMKKLEL 122
>C4JYF5_UNCRE (tr|C4JYF5) DNA-directed RNA polymerase OS=Uncinocarpus reesii
(strain UAMH 1704) GN=UREG_07206 PE=3 SV=1
Length = 1666
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 73/135 (54%), Gaps = 6/135 (4%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ +I + F L+D +++ S +I + LD + PV GGLYDPALG + +C TC
Sbjct: 9 SSTISGVDFEVLSDSDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGD-HVCTTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
+C GH GH++L VYN F+ L +LL+ C YC FR+ R Q++ V +L L+
Sbjct: 68 LNAWSCAGHPGHVELPVHVYNVTFFDQLFRLLRAQCIYCHRFRLSRVQINAYVCKLRLLQ 127
Query: 123 KG-----DIVGAKRL 132
G IVG L
Sbjct: 128 YGLVEEASIVGTMEL 142
>B4HRE8_DROSE (tr|B4HRE8) DNA-directed RNA polymerase OS=Drosophila sechellia
GN=GM20204 PE=3 SV=1
Length = 1585
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + + GGLYD +G S G CG +L
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG--SYGRCMDPCGTCLKLQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L +PVYNP F+ +LL C +C+ ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQLRLIDAGYI 133
Query: 127 VGAKRLDSVLPSETL 141
+ A+ L+ + SET+
Sbjct: 134 IEAQELE-LFKSETV 147
>B4QFV8_DROSI (tr|B4QFV8) DNA-directed RNA polymerase OS=Drosophila simulans
GN=GD25674 PE=3 SV=1
Length = 1642
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + + GGLYD +G S G CG +L
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG--SYGRCMDPCGTCLKLQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L +PVYNP F+ +LL C +C+ ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHEREIIMLQLRLIDAGYI 133
Query: 127 VGAKRLDSVLPSETL 141
+ A+ L+ + SET+
Sbjct: 134 IEAQELE-LFKSETV 147
>B4MRK4_DROWI (tr|B4MRK4) DNA-directed RNA polymerase OS=Drosophila willistoni
GN=GK15841 PE=3 SV=1
Length = 1649
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TDEE+RK S VK+ D + P++GGLYD LG S G CG +
Sbjct: 16 LEFAVFTDEEIRKLSVVKVVTGLTFDALGHPIVGGLYDIRLG--SYGRCMDPCGTCLLMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L S VYNP + +LL C +CF ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCFKMQMKDHECEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>D2PDL6_SULID (tr|D2PDL6) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain L.D.8.5 / Lassen #2) GN=LD85_2133
PE=4 SV=1
Length = 880
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TCG
Sbjct: 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 124 GDIVGAKRL 132
AKRL
Sbjct: 124 RWPSAAKRL 132
>B7P2L8_IXOSC (tr|B7P2L8) DNA-directed RNA polymerase (Fragment) OS=Ixodes
scapularis GN=IscW_ISCW015926 PE=3 SV=1
Length = 1640
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 22/216 (10%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
S+D ++F+ + +E+ + S + +T D+V P GGL+D LGP +C TCG
Sbjct: 10 SVDGVSFNVFSTDELLRLSVLSVTCSETFDIVGHPTKGGLHDSLLGPSDRDEVCATCGLG 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
CPGH GHI L +NPL F L++LL+ +CF C + QL+++ G
Sbjct: 70 FVACPGHIGHISLPLLTFNPLFFRTLYQLLRGSCFGCARLLSPPAVCQLTLAQLQVLQYG 129
Query: 125 DIVGAKRLDSVLPSETLYPEESDGSH------------ESCSTVHSG-AQCHNGEHMKQK 171
+ + L L +E + E+ S E ++ G A N +Q+
Sbjct: 130 AVGAVQELQE-LAAEAITDEKGKASRSVMGLALKKRIDERVKSIMEGRANVKNVVECRQR 188
Query: 172 EWTSLQFSEATSVLNTFLMPKFKKCKNCGAVNPNIT 207
+ + LM +KC +CG V +T
Sbjct: 189 LIKTF--------VREHLMGAPRKCPHCGDVRRGMT 216
>B4P775_DROYA (tr|B4P775) DNA-directed RNA polymerase OS=Drosophila yakuba
GN=GE12306 PE=3 SV=1
Length = 1642
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + + GGLYD +G S G CG +L
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG--SYGKCMDPCGTCLKLQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L +PVYNP + +LL C +C+ ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTPVYNPFFIKIVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLDSVLPS-------ETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFS 179
+ A+ L+ E + + D H + ++S + +NG++ TS
Sbjct: 134 IEAQELELFKSEIVCQNSDELVALKNGDMVHPHIAAMYSLLE-NNGKNSSNSTKTSCSLR 192
Query: 180 EATSVLNTFLMPKFKKCKNC 199
T++ + L KKC++C
Sbjct: 193 --TAITHAALQRLGKKCRHC 210
>A0RXW9_CENSY (tr|A0RXW9) DNA-directed RNA polymerase, beta' subunit/160 kD
subunit OS=Cenarchaeum symbiosum GN=CENSYa_1566 PE=4
SV=1
Length = 1260
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 60/113 (53%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+SI +I FS + E+RK+S +IT P D PV GGL D LG L G C TCG
Sbjct: 7 KSISAIRFSVWSPHEIRKYSVAEITAPETYDEEGMPVQGGLMDGRLGTLEPGQKCLTCGN 66
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK 116
CPGH GHI+L P+ + + +HKLL C C ++ + ++D K
Sbjct: 67 TAARCPGHFGHIELAEPILHIAFIDNIHKLLLGMCRSCSRLKVPQEELDSLSK 119
>C4KIV8_SULIK (tr|C4KIV8) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain M.16.4 / Kamchatka #3) GN=M164_1919
PE=4 SV=1
Length = 880
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TC
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTC 61
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I
Sbjct: 62 GNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 122 VKGDIVGAKRL 132
K A+RL
Sbjct: 122 KKRWPSAARRL 132
>C3MZM8_SULIA (tr|C3MZM8) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain M.16.27) GN=M1627_1989 PE=4 SV=1
Length = 880
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TC
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTC 61
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I
Sbjct: 62 GNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 122 VKGDIVGAKRL 132
K A+RL
Sbjct: 122 KKRWPSAARRL 132
>C3MY99_SULIM (tr|C3MY99) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=M1425_1912
PE=4 SV=1
Length = 880
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TC
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTC 61
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I
Sbjct: 62 GNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 122 VKGDIVGAKRL 132
K A+RL
Sbjct: 122 KKRWPSAARRL 132
>B8YB53_SULSH (tr|B8YB53) RNA polymerase subunit 1N OS=Sulfolobus shibatae B12
GN=rpo1N PE=4 SV=1
Length = 880
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TC
Sbjct: 2 SEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTC 61
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I
Sbjct: 62 GNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAI 121
Query: 122 VKGDIVGAKRL 132
K A+RL
Sbjct: 122 KKRWPSAARRL 132
>B3NR27_DROER (tr|B3NR27) DNA-directed RNA polymerase OS=Drosophila erecta
GN=GG22417 PE=3 SV=1
Length = 1642
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + + GGLYD +G S G CG +L
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMG--SYGRCMDPCGTCLKLQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L +PVYNP F+ +LL C +C+ ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKLQMKDHECEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>C3NFS3_SULIN (tr|C3NFS3) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2)
GN=YN1551_0932 PE=4 SV=1
Length = 880
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TCG
Sbjct: 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 124 GDIVGAKRL 132
A+RL
Sbjct: 124 RWPSAARRL 132
>C3N7Q0_SULIY (tr|C3N7Q0) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1)
GN=YG5714_1988 PE=4 SV=1
Length = 880
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TCG
Sbjct: 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 124 GDIVGAKRL 132
A+RL
Sbjct: 124 RWPSAARRL 132
>C3MRK3_SULIL (tr|C3MRK3) DNA-directed RNA polymerase subunit A' OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=LS215_2021
PE=4 SV=1
Length = 880
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 67/129 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I I F L+ +E+RK S I P + D P+ G + DP LG + G C TCG
Sbjct: 4 KNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGN 63
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
L NCPGH GHI+LV PV + +++ L+ TC C +I +++K + I K
Sbjct: 64 TLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKK 123
Query: 124 GDIVGAKRL 132
A+RL
Sbjct: 124 RWPSAARRL 132
>C5A208_THEGJ (tr|C5A208) DNA-directed RNA polymerase subunit A' (RpoA1)
OS=Thermococcus gammatolerans (strain DSM 15229 / JCM
11827 / EJ3) GN=rpoA1 PE=4 SV=1
Length = 905
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P D P+ GGL D LG + G C+TCG R
Sbjct: 8 IGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
CPGH GHI+L PV + + ++L+ TC C ++ ++++ +K+ E+I
Sbjct: 68 GECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKKFEVI 123
>B7R289_9EURY (tr|B7R289) DNA-directed RNA polymerase subunit A' OS=Thermococcus
sp. AM4 GN=rpoA1 PE=4 SV=1
Length = 905
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 65/116 (56%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P D P+ GGL D LG + G C+TCG R
Sbjct: 8 IGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
CPGH GHI+L PV + + ++L+ TC C ++ ++++ +K+ E+I
Sbjct: 68 GECPGHFGHIELARPVVHVGFAKTIQRVLESTCRECGRIKLTDEEIEEYMKKFEVI 123
>Q2UCQ9_ASPOR (tr|Q2UCQ9) DNA-directed RNA polymerase OS=Aspergillus oryzae
GN=AO090012000486 PE=3 SV=1
Length = 1673
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I FS DE+++ S +I + LD + PV GGLYDPA+G + +C TC
Sbjct: 11 SISGIDFSVYNDEDIKATSVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGD-HVCTTCRMS 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ +++LL+ C YC ++ R QV+ +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVHVYNVTHFDQMYRLLRAQCVYCHRLQMSRTQVNAYTCKLRLLQYG 129
Query: 125 DIVGAKRLDSV 135
+ L+S+
Sbjct: 130 LVDEVAALESM 140
>B8N4P4_ASPFN (tr|B8N4P4) DNA-directed RNA polymerase OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=AFLA_017530 PE=3 SV=1
Length = 1673
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I FS DE+++ S +I + LD + PV GGLYDPA+G + +C TC
Sbjct: 11 SISGIDFSVYNDEDIKATSVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGD-HVCTTCRMS 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ +++LL+ C YC ++ R QV+ +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVHVYNVTHFDQMYRLLRAQCVYCHRLQMSRTQVNAYTCKLRLLQYG 129
Query: 125 DIVGAKRLDSV 135
+ L+S+
Sbjct: 130 LVDEVAALESM 140
>Q6IUR3_ENTHI (tr|Q6IUR3) DNA-directed RNA polymerase OS=Entamoeba histolytica
GN=RPB1 PE=3 SV=1
Length = 1636
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
T+ + I F+ L+ E++RK KIT+ + +PVLGGL DP +GP +G C+TC
Sbjct: 8 TKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSDGKPVLGGLADPRMGPFEKGEECQTCR 67
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK 116
T CPGH G+I+L PVYN + ++ +L+ C C H + K +K
Sbjct: 68 GTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYCHGDERVKNIK 121
>B8C4Z8_THAPS (tr|B8C4Z8) DNA-directed RNA polymerase OS=Thalassiosira pseudonana
GN=RPA1 PE=3 SV=1
Length = 1671
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGP-----LSEGTICKTCG 62
S+ F TD+EVR+ S +I+ D ++ P+ GLYDP LGP C TCG
Sbjct: 15 SVQFGVYTDDEVRQRSVCEISSSVAYDALNTPLPRGLYDPLLGPTAGGGGGASAYCITCG 74
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
CPGH GHI+L PVY+PL F L ++ C C HFR+ + +L L+
Sbjct: 75 NVQNLCPGHFGHIELCVPVYHPLFFPKLLLFMKMKCLACHHFRLSKRACRVFCTKLHLVD 134
Query: 123 KGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFSEAT 182
G + A LD E + + S A G+ K+ S A
Sbjct: 135 VGRMGEAMGLD-----------------EEMAALASKASVGGGDGKMSKQVKQEMMSSAA 177
Query: 183 SVLNTFLMPKF 193
+++ L K
Sbjct: 178 VLIDELLDQKM 188
>Q8U0M4_PYRFU (tr|Q8U0M4) DNA-directed RNA polymerase subunit a' OS=Pyrococcus
furiosus GN=PF1563 PE=4 SV=1
Length = 907
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S V++T P D P+ GG+ D +G + G C+TCG R
Sbjct: 5 IGSIEFGILSPQEIRKMSAVEVTVPDTYDDDGYPIEGGVMDKRMGVIDPGLRCETCGGRA 64
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CPGH GHI+L PV + ++++L+ TC C ++ ++++ +K++EL
Sbjct: 65 GECPGHFGHIELARPVIHVGFAKTIYRILESTCRECGRIKLTDEEIEEYMKKIEL 119
>Q4SFA8_TETNG (tr|Q4SFA8) DNA-directed RNA polymerase OS=Tetraodon nigroviridis
GN=GSTENG00019177001 PE=3 SV=1
Length = 1949
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 70/131 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
++ ++F + EE+RK S IT R LD V LYD ALGP +C TC Q
Sbjct: 12 LEGMSFGVYSAEELRKLSVKAITSARFLDAVGNVAPNSLYDLALGPADNKEVCSTCCQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+NCPGH G ++L PVYNPL F+ L+ LL +C C R + + QL+L+ G
Sbjct: 72 SNCPGHLGRVELPLPVYNPLFFDKLYLLLCGSCLSCHTLTCPRAAIHLLLNQLKLLDHGA 131
Query: 126 IVGAKRLDSVL 136
I +++ VL
Sbjct: 132 IQEVYQIEQVL 142
>Q5RAX8_PONAB (tr|Q5RAX8) DNA-directed RNA polymerase OS=Pongo abelii
GN=DKFZp469F0610 PE=2 SV=1
Length = 1659
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 2/144 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR LD + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGIYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+NC GH GHI+L VYNPLLF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 SNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGA 131
Query: 126 IVGAKRLDSVLPSETLYPEESDGS 149
+ L+ +L L E +D S
Sbjct: 132 LQAVYELERIL--NRLLEENADPS 153
>B4GAV6_DROPE (tr|B4GAV6) DNA-directed RNA polymerase OS=Drosophila persimilis
GN=GL11448 PE=3 SV=1
Length = 1647
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + P+ GGLYD +G S G CG ++
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGIAFDALGHPMPGGLYDIRMG--SYGRCIDPCGTCLKMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L + VYNP + +LL C +CF ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLDSVLPSET--------LYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQF 178
+ A+ L+ + SE + + D H + +H E + T
Sbjct: 134 IEAQELE-IFKSEIVCQNSEELIKLDNGDAVHPRIAAMHELLLKSGTEPTHSTKSTC--- 189
Query: 179 SEATSVLNTFLMPKFKKCKNC 199
S T+V ++ L KKC++C
Sbjct: 190 SLRTAVTHSALQRPGKKCRHC 210
>Q291D4_DROPS (tr|Q291D4) DNA-directed RNA polymerase OS=Drosophila pseudoobscura
pseudoobscura GN=GA10089 PE=3 SV=1
Length = 1647
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 16/201 (7%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TD+E+RK S VK+ D + P+ GGLYD +G S G CG ++
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGIAFDALGHPMPGGLYDIRMG--SYGRCIDPCGTCLKMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L + VYNP + +LL C +CF ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGTLVYNPFFIKLVQRLLCIFCLHCFKLQMKDHECEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLDSVLPSET--------LYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQF 178
+ A+ L+ + SE + + D H + +H E + T
Sbjct: 134 IEAQELE-IFKSEIVCQNSEELIKLDNGDAVHPRIAAMHELLLKSGTEPTHSTKSTC--- 189
Query: 179 SEATSVLNTFLMPKFKKCKNC 199
S T+V ++ L KKC++C
Sbjct: 190 SLRTAVTHSALQRPGKKCRHC 210
>B9ZVN9_HUMAN (tr|B9ZVN9) DNA-directed RNA polymerase OS=Homo sapiens GN=POLR1A
PE=3 SV=1
Length = 1659
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR LD + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+NC GH GHI+L VYNPLLF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 SNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>B7ZKR9_HUMAN (tr|B7ZKR9) DNA-directed RNA polymerase OS=Homo sapiens GN=POLR1A
PE=2 SV=1
Length = 1720
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR LD + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+NC GH GHI+L VYNPLLF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 SNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>D6W5M0_HUMAN (tr|D6W5M0) Polymerase (RNA) I polypeptide A, 194kDa, isoform CRA_a
OS=Homo sapiens GN=POLR1A PE=4 SV=1
Length = 1720
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I+F + EE++K S IT+PR LD + P GLYD ALGP +C TC Q
Sbjct: 12 LQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQDF 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
+NC GH GHI+L VYNPLLF+ L+ LL+ +C C R + + QL ++ G
Sbjct: 72 SNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGA 131
Query: 126 IVGAKRLDSVL 136
+ L+ +L
Sbjct: 132 LQAVYELERIL 142
>B6HAC6_PENCW (tr|B6HAC6) DNA-directed RNA polymerase OS=Penicillium chrysogenum
(strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255)
GN=Pc16g12350 PE=3 SV=1
Length = 1671
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+I+ + F+ ++EE++ S +I + LD + PV GGL DPA+G + +C TC Q
Sbjct: 11 TINGVDFNVYSEEEIKALSVKRIHNTPTLDSFNNPVPGGLQDPAMGAWGD-HVCTTCRQN 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
C GH GHI+L P YN F+ + +LL+ C YC ++ R QV+ +L L+ G
Sbjct: 70 SFTCTGHPGHIELPVPFYNVTFFDHIFRLLRAQCVYCLRLQMGRNQVNMYTCKLRLLQYG 129
>Q6MYA4_ASPFU (tr|Q6MYA4) DNA-directed RNA polymerase OS=Aspergillus fumigatus
GN=AfA19D12.055 PE=3 SV=1
Length = 1692
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSE---------- 54
SI I F +DE+++ S +I + LD + PV GGLYDPALG +
Sbjct: 11 SISGIEFGVYSDEDIKSISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDHLSLVIAYFG 70
Query: 55 -----GTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRG 109
C TC Q +C GH GHI+L VYN F+ L++LL+ C YC F++ R
Sbjct: 71 PFWLTAFSCTTCRQNSWSCTGHPGHIELPVRVYNVTFFDQLYRLLRAQCVYCHRFQMARV 130
Query: 110 QVDKCVKQLELIVKG 124
Q++ V +L L+ G
Sbjct: 131 QINAYVCKLRLLQYG 145
>B0XG16_CULQU (tr|B0XG16) DNA-directed RNA polymerase OS=Culex quinquefasciatus
GN=CpipJ_CPIJ018338 PE=3 SV=1
Length = 1692
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 70/126 (55%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
++ F+ +DE++++ S KI PR D + + GGLYD A+GP +C TC + +
Sbjct: 15 NLQFAVFSDEDIKRMSVTKIVTPRSFDDLGNSIPGGLYDAAMGPSGRSEVCATCVKDMAQ 74
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIV 127
C GH GHI++ PV+NP ++ LL+ +C C ++ + QL+L+ G IV
Sbjct: 75 CEGHFGHIEICLPVFNPFFIKTVYNLLRISCNACHRLQMSDPLKELLQLQLQLVDAGYIV 134
Query: 128 GAKRLD 133
A+ L+
Sbjct: 135 EAEELE 140
>A8Q5K0_BRUMA (tr|A8Q5K0) DNA-directed RNA polymerase OS=Brugia malayi
GN=Bm1_43180 PE=3 SV=1
Length = 1687
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%)
Query: 18 EVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDL 77
E+ + S ++IT+ + D + P+ GGLYD LGPL C+TC Q+ T CPGH GHI L
Sbjct: 27 EIERISVLRITETKAFDEIGHPISGGLYDLRLGPLETFDTCETCHQQGTYCPGHMGHIQL 86
Query: 78 VSPVYNPLLFNFLHKLLQRTCFYC 101
P +NPLLF F L+ TC C
Sbjct: 87 DIPAFNPLLFGFTFSLMNGTCVQC 110
>C9RDK8_METVM (tr|C9RDK8) DNA-directed RNA polymerase subunit A'
OS=Methanocaldococcus vulcanius (strain ATCC 700851 /
DSM 12094 / M7) GN=Metvu_1534 PE=4 SV=1
Length = 1343
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 63/116 (54%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I + F L+ + +R+ S KI P D P+ GGL DP LG + G +CKTCG
Sbjct: 10 KEIGEMMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDPRLGVIDPGLVCKTCGG 69
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
R+ CPGH GHI+L PV + ++K+L+ C +C I + + ++++E
Sbjct: 70 RIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILEKME 125
>C4Q0S7_SCHMA (tr|C4Q0S7) DNA-directed RNA polymerase OS=Schistosoma mansoni
GN=Smp_129500 PE=3 SV=1
Length = 1784
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
I + + F + +EVR+ S K+T+ D R V GGL+D G + C CG
Sbjct: 9 IVGLRYGFYSSDEVRRLSVRKVTNDLAFDKFTGRGVDGGLHDVNFGVIGYSETCAHCGMD 68
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHF 104
T+CPGHCGHI+ PV+NP +F+ L+K+++ CF CF
Sbjct: 69 FTDCPGHCGHIEFSKPVFNPFMFDVLYKIVKSFCFGCFRL 108
>D2RIB4_ARCPA (tr|D2RIB4) DNA-directed RNA polymerase subunit A' OS=Archaeoglobus
profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 /
Av18) GN=Arcpr_0978 PE=4 SV=1
Length = 871
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/114 (37%), Positives = 60/114 (52%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I +I F L+ +E+R+ S KI D P+ GGL DP LG + G C+TCG +
Sbjct: 6 ISAIRFEVLSPQEIRRMSVAKIVSAETYDDDGFPIEGGLMDPRLGVIDPGLRCRTCGGKA 65
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CPGH GHI+L +PV + + KLL TC C R+ DK + ++E
Sbjct: 66 GECPGHFGHIELAAPVIHVGYAKLIAKLLNATCRECGRLRLPDKVRDKFLDEIE 119
>B3T303_9ARCH (tr|B3T303) Putative RNA polymerase Rpb1, domain 2 OS=uncultured
marine crenarchaeote HF4000_ANIW93I24
GN=ALOHA_HF4000ANIW93I24ctg2g19 PE=4 SV=1
Length = 1264
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I I F + E+RK+S V++T P D V GGL D LG L G C TCG
Sbjct: 7 KAIAGIKFCVWSPNEIRKYSVVEVTAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCGN 66
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
CPGH GH++L PV + + +HKLLQ TC C ++ + +D+ K +
Sbjct: 67 TSARCPGHFGHVELSEPVLHIAFIDNIHKLLQATCRSCSRLKVPQEVLDEFSKLKKYRAS 126
Query: 124 GDIVGAKRL 132
+++ KR+
Sbjct: 127 FNVISQKRI 135
>B3T7L4_9ARCH (tr|B3T7L4) Putative RNA polymerase Rpb1, domain 2 OS=uncultured
marine crenarchaeote HF4000_APKG3E18
GN=ALOHA_HF4000APKG3E18ctg5g39 PE=4 SV=1
Length = 1273
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+SID I F + E+RK+S +IT P D V GGL D LG L G C TCG
Sbjct: 12 KSIDGIKFCVWSPNEIRKYSVAEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTCGN 71
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVK 116
CPGH GH++L PV + + +HKLL TC C ++ + +D+ K
Sbjct: 72 TSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRACSRLKVPQEVLDEFSK 124
>A2QRS4_ASPNC (tr|A2QRS4) DNA-directed RNA polymerase OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=An08g07050 PE=3 SV=1
Length = 1680
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
SI I F DE+++ S +I + LD + PV GGLYDPA+G + +C TC Q
Sbjct: 11 SIAGIEFGVYNDEDIKAISVKRIHNTPTLDSFNNPVPGGLYDPAMGAWGD-HVCTTCRQT 69
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKG 124
+C GH GHI+L VYN F+ L++LL+ C YC F++ R ++ +L L+ G
Sbjct: 70 SWSCTGHPGHIELPVHVYNVTHFDQLYRLLKGQCVYCHRFQMSRTNINSYSCKLRLLHYG 129
Query: 125 --------DIVGAKRLD 133
D +G K D
Sbjct: 130 LVDELAVIDTIGGKGSD 146
>B3MEH6_DROAN (tr|B3MEH6) DNA-directed RNA polymerase OS=Drosophila ananassae
GN=GF13529 PE=3 SV=1
Length = 1643
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ TDEE+RK S VK+ D + P+ GGLYD LG S G CG ++
Sbjct: 16 LEFAVFTDEEIRKLSVVKVITGITFDALGHPMPGGLYDIRLG--SYGKCMDPCGTCLKMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
C GH GHI+L +PVYNP + +LL C +C+ ++ + + QL LI G I
Sbjct: 74 ECSGHMGHIELGTPVYNPFFIKLVQRLLCIFCLHCYKLQMKDHEQQIIMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>B0EDI6_ENTDI (tr|B0EDI6) DNA-directed RNA polymerase OS=Entamoeba dispar SAW760
GN=EDI_337480 PE=3 SV=1
Length = 1568
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 72/145 (49%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S F F + +E+R S +IT DL+ L GLYDPALG + TIC TCG
Sbjct: 17 ITSTGFDFYSADEIRHMSVKEITKGTSFDLLGNQELEGLYDPALGVFGKNTICPTCGLTE 76
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GH +L P+Y PLL L KLL+ C C + + + +LE + K D
Sbjct: 77 EGCPGHFGHFELEEPLYQPLLLPELVKLLRSICMKCHSLKASKQVILGAAIELERLSKND 136
Query: 126 IVGAKRLDSVLPSETLYPEESDGSH 150
I GA + ++ +++ S
Sbjct: 137 IEGAMDIHGLVKEAQYIQRKANASR 161
>B4LLN1_DROVI (tr|B4LLN1) DNA-directed RNA polymerase OS=Drosophila virilis
GN=GJ20610 PE=3 SV=1
Length = 1648
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ T EE+RK S VK+ D + P+ GGLYD LG S G CG ++
Sbjct: 16 LEFAVFTPEEIRKLSVVKVITGLTFDALGHPIPGGLYDIRLG--SYGRCTDPCGTCLKMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L S VYNP + +LL C +C+ ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCYKLQMKDHESEIVMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>A2BN34_HYPBU (tr|A2BN34) DNA-directed RNA polymerase subunit A' OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_1574 PE=4
SV=1
Length = 881
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 53/96 (55%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I + F L+ +E+RK S I L D RP+ GGL DP LG ++ G IC TCG
Sbjct: 8 IREVKFGILSPDEIRKMSVTAIVTSELYDEDGRPIPGGLMDPRLGAIAPGQICPTCGNDA 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CPGH G I+LV PV + +++ +L+ TC C
Sbjct: 68 KGCPGHFGRIELVRPVIHVGFAKYIYDVLRATCRQC 103
>D5VRW3_METIM (tr|D5VRW3) DNA-directed RNA polymerase subunit A'
OS=Methanocaldococcus infernus (strain DSM 11812 / JCM
15783 / ME) GN=Metin_0647 PE=4 SV=1
Length = 886
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 62/116 (53%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ + I F L+ + +RK S KI P D P+ GGL DP LG + G CKTCG
Sbjct: 5 KELKEIMFGILSPDYIRKMSVAKIVTPDTYDEDGYPIEGGLMDPRLGVIDPGLRCKTCGG 64
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
R+ CPGH GHI+L P+ + ++K+L+ C +C I + + ++++E
Sbjct: 65 RIGECPGHFGHIELAKPIIHVGFAKTIYKILKAVCPHCGRILIPENKRREILEKME 120
>O28391_ARCFU (tr|O28391) DNA-directed RNA polymerase, subunit A' (RpoA1)
OS=Archaeoglobus fulgidus GN=AF_1888 PE=4 SV=1
Length = 867
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 61/114 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I +I F L+ +E+R+ S VKI P D P+ GGL D LG + G CKTCG +
Sbjct: 6 ISAIKFEVLSPQEIRRMSVVKIITPETYDDDGFPIDGGLMDTRLGVIDPGLRCKTCGGKA 65
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CPGH GH++L +PV + + +LL TC C + + DK + ++E
Sbjct: 66 GECPGHFGHVELAAPVIHVGYAKMIARLLNGTCSECGRILLKDERRDKFIAEIE 119
>D3S666_METSF (tr|D3S666) DNA-directed RNA polymerase subunit A'
OS=Methanocaldococcus sp. (strain FS406-22)
GN=MFS40622_1659 PE=4 SV=1
Length = 891
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F L+ + +RK S KI P D P+ GGL D LG + G +CKTCG
Sbjct: 10 KEIGEIMFGLLSPDYIRKMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGG 69
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI---HRGQVDKCVKQLE 119
R+ CPGH GHI+L PV + ++K+L+ C +C I R ++ + +K+LE
Sbjct: 70 RIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISEAKRREILEKMKKLE 128
>C4M3E6_ENTHI (tr|C4M3E6) DNA-directed RNA polymerase OS=Entamoeba histolytica
GN=EHI_095890 PE=3 SV=1
Length = 1570
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S F F + +E+R S +IT DL+ L GLYDPALG + TIC TCG
Sbjct: 17 ITSTGFDFYSADEIRHMSVKEITKGTSFDLLGNQELEGLYDPALGVFGKNTICPTCGLTE 76
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GH +L P+Y PLL L KLL+ C C + + + + E + K D
Sbjct: 77 EGCPGHFGHFELEEPMYQPLLLTELLKLLRSICMKCHSLKASKQVILGAAIEFERLAKND 136
Query: 126 IVGAKRLDSVLPSETLYPEESDGSH 150
I GA + ++ +++ S
Sbjct: 137 IEGAMDIHGLVKEAQYIQRKANASR 161
>A8N128_COPC7 (tr|A8N128) DNA-directed RNA polymerase OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_11229 PE=3
SV=2
Length = 1745
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+ + F L+ EE++ S VKI P ++D +P L GL DP +G + C+TCG+
Sbjct: 16 VKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTIDRNFKCQTCGEG 75
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++P FN + K+L+ C C
Sbjct: 76 MAECPGHFGHIELARPVFHPGFFNKVKKILECICVNC 112
>B4J684_DROGR (tr|B4J684) DNA-directed RNA polymerase OS=Drosophila grimshawi
GN=GH20790 PE=3 SV=1
Length = 724
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ + EE+RK S VKI D + P+ GGLYD LG S G CG R+
Sbjct: 16 LEFAVFSPEEIRKLSVVKIITGLTFDALGHPIPGGLYDIRLG--SYGRCMDPCGTCLRMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH G I+L S VYNP + +LL C +CF ++ + + + QL LI G I
Sbjct: 74 DCPGHMGRIELGSLVYNPFFIKMVQRLLCIFCLHCFKLQMKDHESEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>A8XYH3_CAEBR (tr|A8XYH3) DNA-directed RNA polymerase OS=Caenorhabditis briggsae
GN=CBG20734 PE=3 SV=2
Length = 1764
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 60/115 (52%)
Query: 18 EVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDL 77
E+ K S +K+ + D V P+ GGLYDP LGP + C+TC Q +CPGH GHI L
Sbjct: 27 EIDKLSVLKVIQTKTFDEVGHPIEGGLYDPVLGPDNIRDNCRTCNQYERHCPGHMGHIQL 86
Query: 78 VSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVGAKRL 132
PV+NPLLF F + + + I + CV L KGD V A+ L
Sbjct: 87 AVPVFNPLLFQFTYNVSFMKVISKSYISILQLLKGSCVHCHRLTCKGDGVNARML 141
>A8A925_IGNH4 (tr|A8A925) DNA-directed RNA polymerase, subunit A' OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=Igni_0243 PE=4 SV=1
Length = 889
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 71/133 (53%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
A + I I F L+ +E+RK + V + + D PV GG+ DP +G S G C TC
Sbjct: 11 ADKIIKEIKFGILSPDEIRKMAVVAVVTDQAYDEAGMPVEGGIMDPRMGVTSPGQRCPTC 70
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G L +CPGH G+I+LV PV + ++ L+ TC C ++ ++DK ++ E +
Sbjct: 71 GNTLHDCPGHFGYIELVKPVIHYEFVPHIYDALRATCRVCGRVKLSDEEIDKFLRLYEKL 130
Query: 122 VKGDIVGAKRLDS 134
K + A+R+ +
Sbjct: 131 EKKWPLLARRVTA 143
>B4KP10_DROMO (tr|B4KP10) DNA-directed RNA polymerase OS=Drosophila mojavensis
GN=GI20875 PE=3 SV=1
Length = 1649
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 9 ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ--RLT 66
+ F+ T EE+RK S VKI D + P+ GGLYD LG S G CG ++
Sbjct: 16 LEFAVFTPEEIRKLSVVKIITGLTFDALGHPIPGGLYDIRLG--SYGRCMDPCGTCLKMQ 73
Query: 67 NCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDI 126
+CPGH GHI+L S VYNP + +LL C +C ++ + + + QL LI G I
Sbjct: 74 DCPGHMGHIELGSLVYNPFFIKLVQRLLCIFCLHCHKLQMRDHESEIIMLQLRLIDAGYI 133
Query: 127 VGAKRLD 133
+ A+ L+
Sbjct: 134 IEAQELE 140
>C7P941_METFA (tr|C7P941) DNA-directed RNA polymerase subunit A'
OS=Methanocaldococcus fervens (strain DSM 4213 / JCM
157852 / AG86) GN=Mefer_1264 PE=4 SV=1
Length = 891
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 62/116 (53%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F L+ + +R+ S KI P D P+ GGL D LG + G +CKTCG
Sbjct: 10 KEIGEIMFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCKTCGG 69
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
R+ CPGH GHI+L PV + ++K+L+ C +C I + + ++++E
Sbjct: 70 RIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISETKRKEILEKME 125
>Q976A5_SULTO (tr|Q976A5) 884aa long hypothetical DNA-directed RNA polymerase
subunit A' OS=Sulfolobus tokodaii GN=ST0276 PE=4 SV=1
Length = 884
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 54/101 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I I F L+ +E+RK S I + D P+ GG+ DP LG + G C TCG L
Sbjct: 10 IKGIKFGILSPDEIRKMSVTAIITSEVYDEDGTPIEGGVMDPRLGVIEPGQKCPTCGNTL 69
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
CPGH GHI+LV PV + ++ +L+ TC +C +I
Sbjct: 70 NGCPGHFGHIELVRPVIHVGFVKHVYDILRATCRHCGRLKI 110
>Q4P7Q0_USTMA (tr|Q4P7Q0) DNA-directed RNA polymerase OS=Ustilago maydis
GN=UM03863.1 PE=3 SV=1
Length = 1774
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 55/100 (55%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ + F L+ EE+R S K+ P + D +P +GGL DP LG L C+TCG+
Sbjct: 19 VREVQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGH 78
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFR 105
CPGH GHIDL PV++ + K+L+ CF+C +
Sbjct: 79 QECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLK 118
>Q6CBQ3_YARLI (tr|Q6CBQ3) DNA-directed RNA polymerase OS=Yarrowia lipolytica
GN=YALI0C16566g PE=3 SV=2
Length = 1750
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 82/171 (47%), Gaps = 23/171 (13%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
+++ + F L+ EEV+ S KI P +D RP +GGL DP LG + C+TCG+
Sbjct: 15 TVEEVQFGLLSPEEVKAMSVAKIEFPETMDETRQRPRVGGLNDPRLGTIDRNFKCQTCGE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQV--DKCVKQLELI 121
+ CPGH GHI+L PV++ + K+ + CF+C G+V D+ KQ
Sbjct: 75 GMAECPGHFGHIELAKPVFHIGFIAKIKKICESVCFHC-------GKVLLDENNKQFAQA 127
Query: 122 VKGDIVGAKRLDSVLPS--------ETLYPEESDGSHESCSTVHSGAQCHN 164
++ I KR + + S ET P E DG S HS C N
Sbjct: 128 IR--IRDPKRRFNAVWSLCKTKMVCETDVPTEDDG---SGVVKHSHGGCGN 173
>A2FYC3_TRIVA (tr|A2FYC3) DNA-directed RNA polymerase OS=Trichomonas vaginalis
GN=TVAG_396440 PE=3 SV=1
Length = 387
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I SI F + EE+ S + +T + D +P+ G+YD LGP C CGQ
Sbjct: 7 QPITSIEFLPYSKEEIENFSVMPVTATGVFDRQGKPIAEGVYDSHLGPTEHDQTCPICGQ 66
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
NCPGH G+I L PVY+PL L + + C C RI + + V L+LI +
Sbjct: 67 HAWNCPGHFGNIKLAMPVYHPLYVKQLGRFMSGFCTECNCLRIPKEIMLNVVNALQLIER 126
Query: 124 GDIVG 128
G +V
Sbjct: 127 GQLVS 131
>B6QC93_PENMQ (tr|B6QC93) DNA-directed RNA polymerase OS=Penicillium marneffei
(strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=PMAA_066910 PE=3 SV=1
Length = 1689
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 1/128 (0%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
S+ FS + E+++K S +I + LD + P+ LYDPALG + +C TC +
Sbjct: 14 SVDFSVYSSEDIKKISVKRIFNTPSLDSLHNPIPHSLYDPALGAWGD-HVCTTCRASSWS 72
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIV 127
CPGH GHI+L PV+N F+ +++LL+ C YC R+ R +++ +L L+ G +
Sbjct: 73 CPGHPGHIELPVPVWNVTFFDQVYRLLRAKCDYCHRLRMPRIEINAFACKLRLLQYGLVD 132
Query: 128 GAKRLDSV 135
++D +
Sbjct: 133 QTAKIDMI 140
>B8M0T3_TALSN (tr|B8M0T3) DNA-directed RNA polymerase OS=Talaromyces stipitatus
(strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006)
GN=TSTA_086990 PE=3 SV=1
Length = 1689
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
++ FS + E+++K S +I + LD + P+ LYDPALG + +C TC +
Sbjct: 14 AVDFSVYSSEDIKKISVKRIFNTPSLDSLHNPIPNSLYDPALGAWGD-HVCTTCRASSWS 72
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIV 127
CPGH GHI+L P++N F+ +++LL+ C +C RI R +++ +L L+ G +
Sbjct: 73 CPGHPGHIELPVPIWNVTFFDQMYRLLRAKCDFCHRLRIARVEINAYACKLRLLQYGLVD 132
Query: 128 GAKRLDSV 135
+D +
Sbjct: 133 QTAEIDKI 140
>D3RWR8_FERPA (tr|D3RWR8) DNA-directed RNA polymerase subunit A' OS=Ferroglobus
placidus (strain DSM 10642 / AEDII12DO) GN=Ferp_0761
PE=4 SV=1
Length = 870
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 59/114 (51%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I +I F L+ +E+R+ S KI P P+ GL DP LG + G C+TCG +
Sbjct: 6 ISAIKFEVLSPQEIRRMSVAKIFTPETYSDDGYPIESGLMDPRLGVVDPGLRCRTCGGKA 65
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CPGH GHI+L +PV + + +LL TC C + + DK + Q+E
Sbjct: 66 GECPGHFGHIELAAPVIHVGYAKLIARLLNGTCRECGRILLKDERRDKYIAQIE 119
>B3T8B1_9ARCH (tr|B3T8B1) Putative RNA polymerase Rpb1, domain 2 OS=uncultured
marine crenarchaeote HF4000_APKG5C13
GN=ALOHA_HF4000APKG5C13ctg1g26 PE=4 SV=1
Length = 1268
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 66/131 (50%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ ++I I F + E+RK+S +IT P D V GGL D LG L G C TC
Sbjct: 5 SVKAIAGIKFCVWSPNEIRKYSVSEITAPETYDEDGMAVQGGLMDGRLGTLEPGQKCLTC 64
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G CPGH GH++L PV + + +HKLL TC C ++ + +D+ +K +
Sbjct: 65 GNTSARCPGHFGHVELAEPVLHIAFIDNIHKLLNATCRSCSRLKVPQEVLDEFLKFKKYS 124
Query: 122 VKGDIVGAKRL 132
++ KR+
Sbjct: 125 ASFAVISQKRI 135
>A4RMP1_MAGGR (tr|A4RMP1) DNA-directed RNA polymerase OS=Magnaporthe grisea
GN=MGG_04652 PE=3 SV=1
Length = 1757
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCG 62
++I+ I F L EE++ S V + P +D +P GGL DP LG CKTC
Sbjct: 14 KTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDRQYKCKTCN 73
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ NCPGH GHI+L PVY+P N K+L+ C C
Sbjct: 74 NDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQC 112
>Q8TXI8_METKA (tr|Q8TXI8) DNA-directed RNA polymerase largest subunit, the
C-terminal part OS=Methanopyrus kandleri GN=MK0685 PE=4
SV=1
Length = 953
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I F L +++RK S V++T P D P+ GG+ D +G + G C+TCGQ
Sbjct: 16 VKRILFGILPPDKIRKMSKVEVTSPETYDEDGYPIEGGVMDTRMGVIDPGLRCRTCGQPA 75
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PV +P + +L+ TC C ++ +++ ++++
Sbjct: 76 GRCPGHFGHIELARPVLHPRYAERIKDVLRATCPECGRVKLPEDEIESYLREVR------ 129
Query: 126 IVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQ 161
+ + P +++ E D + + S H GA+
Sbjct: 130 -------EGIRPVKSVAAEVIDRAEKRESCPHCGAE 158
>D6GWV8_9EURY (tr|D6GWV8) RNA polymerase Rpb1 domain 1 OS=Candidatus Parvarchaeum
acidophilus ARMAN-5 GN=BJBARM5_0984 PE=4 SV=1
Length = 840
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I ++ F L+ + ++K S V IT L D+ PV GGL D +G + G CKTCG +
Sbjct: 12 IAALEFGILSPKMIQKMSTVAITSSELYDIDGFPVDGGLSDLRMGVIDPGLTCKTCGNTI 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+CPGH GH++L PV+N +++ +L TC C
Sbjct: 72 RDCPGHFGHLELARPVFNIKTVPYIYNILNSTCVSC 107
>A2DXG8_TRIVA (tr|A2DXG8) DNA-directed RNA polymerase OS=Trichomonas vaginalis
GN=TVAG_380300 PE=3 SV=1
Length = 594
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I SI F + EE+ S + +T + D +P+ G+YD LGP C CGQ
Sbjct: 7 QPITSIEFLPYSKEEIENFSVMPVTATGVFDRQGKPIAEGVYDTHLGPTEHDQTCPICGQ 66
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
NCPGH G+I L PVY+PL L + + C C RI + + V L+LI +
Sbjct: 67 HAWNCPGHFGNIKLAMPVYHPLYVKQLGRFMGGFCTECNCLRIPKEIMLNVVNALQLIER 126
Query: 124 GDIVG 128
G +V
Sbjct: 127 GQLVS 131
>B0DB45_LACBS (tr|B0DB45) DNA-directed RNA polymerase OS=Laccaria bicolor (strain
S238N-H82) GN=LACBIDRAFT_327452 PE=3 SV=1
Length = 1742
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQR 64
+ + F L+ EE++ S KI P ++D +P +GGL DP +G + C+TCG+
Sbjct: 16 VKEVQFGILSPEEIKAISVAKIEHPEVMDEATHKPKMGGLMDPRMGTIDRNFKCQTCGEG 75
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
++ CPGH GHI+L PV++P + K+L+ C C
Sbjct: 76 MSECPGHFGHIELARPVFHPGFIIKVKKILESICVNC 112
>Q7SDN0_NEUCR (tr|Q7SDN0) DNA-directed RNA polymerase OS=Neurospora crassa
GN=NCU02103 PE=3 SV=1
Length = 1752
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
+I I F L+ EE++ S I P +D +P GGL DP LG + CKTCG+
Sbjct: 15 TIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTCGE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
++ CPGH GHI+L PVY+P + K+L+ C C
Sbjct: 75 NMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNC 112
>A3FQH3_CRYPV (tr|A3FQH3) DNA-directed RNA polymerase OS=Cryptosporidium parvum
Iowa II GN=cgd5_730 PE=3 SV=1
Length = 1805
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 1/128 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S +F L EV+K S +T + +GGL+D +GPLS C TCG R
Sbjct: 10 IHSASFDLLRASEVKKLSVCHVTSTTTFESTGESKVGGLHDLRMGPLSNRDFCGTCGSR- 68
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
CPGH GHI+L PV++PL L ++L+ C++C R+ + + VK+ E I K
Sbjct: 69 NECPGHIGHIELELPVFHPLFLGNLVRILKCCCWHCCCIRLSKKVCNGYVKRFESIGKNS 128
Query: 126 IVGAKRLD 133
VG+K L+
Sbjct: 129 NVGSKDLE 136
>C7DHC4_9EURY (tr|C7DHC4) RNA polymerase alpha subunit OS=Candidatus Micrarchaeum
acidiphilum ARMAN-2 GN=UNLARM2_0470 PE=4 SV=1
Length = 844
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 66/123 (53%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
E+I+ I F+ ++ E ++K S K+ P + P+ GGL D LG + G CKTCG
Sbjct: 3 AETIEYIKFTSISPEMIKKMSVAKLIVPDTYNEDGYPIDGGLVDQRLGVIDPGLKCKTCG 62
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
R +C GH GH++L+ PV +P ++ +LQ TC C + Q+ + + ++ +V
Sbjct: 63 GRAKSCTGHFGHLELIRPVIHPEFAKSIYFMLQSTCESCHRILLGEDQISEAKEAMKSLV 122
Query: 123 KGD 125
D
Sbjct: 123 VSD 125
>C6LRR9_GIALA (tr|C6LRR9) DNA-directed RNA polymerase OS=Giardia intestinalis
ATCC 50581 GN=GL50581_1452 PE=3 SV=1
Length = 2144
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ S+ +T S +++++R+ + ++ + LD V P+ GG YDPA+GP +C+TCG
Sbjct: 7 SASLSGLTLSTYSEDDIRRLATCRVVTEQGLDNVGLPIRGGYYDPAMGPRLFYDVCETCG 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
R +CPGH G+++L YN F + +L + C C+ F I Q L L+
Sbjct: 67 LRWKHCPGHVGYVELPVYCYNHFFFRYTLQLYKLVCHSCYRFIITDIQAITIETGLLLLD 126
Query: 123 KGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQK 171
G + + S+L + SH SC+ + S + +++ Q+
Sbjct: 127 AGLVCELHHIFSIL---------NGTSHTSCALLLSQLRQQAYDYLSQR 166
>D2I0I0_AILME (tr|D2I0I0) DNA-directed RNA polymerase (Fragment) OS=Ailuropoda
melanoleuca GN=PANDA_018669 PE=3 SV=1
Length = 1692
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 65/118 (55%)
Query: 19 VRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHIDLV 78
+RK S IT+PR LD + P + GLYD ALGP +C TC Q NC GH GHI+L
Sbjct: 1 LRKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIELP 60
Query: 79 SPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGDIVGAKRLDSVL 136
VYNPLLF+ L+ LL+ +C C R + V QL ++ G + L+ +L
Sbjct: 61 LTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLVCQLRVLEVGALQAVYELERIL 118
>B2AA31_PODAN (tr|B2AA31) DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 1748
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
+I I F L+ +E++ S I P +D +P GGL DP LG + CKTC +
Sbjct: 15 TIQEIQFGLLSPDEIKAMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTCTE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
++ CPGH GHI+L PVY+P KLL+ C C
Sbjct: 75 NMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNC 112
>B6JYP8_SCHJY (tr|B6JYP8) DNA-directed RNA polymerase OS=Schizosaccharomyces
japonicus (strain yFS275 / FY16936) GN=SJAG_01713 PE=3
SV=1
Length = 1748
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQR 64
++ + F L+ EE+R S KI P +D RP + GL DP LG + C+TCG+
Sbjct: 16 VEEVQFGILSPEEIRSMSVAKIEFPETMDETGLRPRVAGLLDPRLGTIDRQFKCQTCGET 75
Query: 65 LTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
+ CPGH GHI+L PV++ + K+L+ C+ C +I
Sbjct: 76 MAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLKI 117
>D1YXW8_METPS (tr|D1YXW8) DNA-directed RNA polymerase subunit A' OS=Methanocella
paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /
SANAE) GN=rpoA1 PE=4 SV=1
Length = 877
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
A + I I F L+ E+RK S K+ D P+ GL DP LG + G CKTC
Sbjct: 3 APKRIRKIKFGLLSPAEIRKMSVTKVITADTYDDDGYPIDMGLMDPRLGVIDPGLRCKTC 62
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
G R CPGH GHI+L SPV + L K+L TC C + ++Q++
Sbjct: 63 GGRPGECPGHFGHIELASPVIHVGFARLLRKILMTTCRRCGKLMLDDKAKADYIRQIKTN 122
Query: 122 VK 123
++
Sbjct: 123 IR 124
>A4YCQ9_METS5 (tr|A4YCQ9) DNA-directed RNA polymerase, subunit A'
OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
GN=Msed_0034 PE=4 SV=1
Length = 886
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 62/127 (48%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I + F L+ +E+RK S I + D P+ G + D LG + G C CG +
Sbjct: 12 IKGVRFGILSPDEIRKMSVTAIITADVYDEDGTPIEGSVMDSRLGIIEPGQKCPICGNVI 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVKGD 125
NCPGH GHI+LV PV + ++ LL+ TC C +I ++K K + I K
Sbjct: 72 GNCPGHFGHIELVRPVIHVGFVKHVYDLLRSTCRRCGRVKISENDIEKYRKIYDAIKKRW 131
Query: 126 IVGAKRL 132
AKRL
Sbjct: 132 PSAAKRL 138
>A9BKN5_9CRYP (tr|A9BKN5) DNA-directed RNA polymerase OS=Cryptophyta GN=HAN_2g213
PE=3 SV=1
Length = 1496
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 8 SITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTN 67
+I+FSF + +E+ S V+I P D +LGGL D +G S+ +C +C
Sbjct: 19 AISFSFYSKKEIHHLSLVEIICPIFFDKKGFSILGGLCDLRMGVTSKKDVCVSCRGNYLT 78
Query: 68 CPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
CPGH GH+DL+ P+ NP+L N +L+ C YC FRI
Sbjct: 79 CPGHFGHVDLIIPIKNPMLKNLFVNILKAKCNYCNLFRI 117
>Q0D0E1_ASPTN (tr|Q0D0E1) DNA-directed RNA polymerase OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=ATEG_00593 PE=3 SV=1
Length = 1691
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 20/151 (13%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGP----------LSE 54
SI + F TDE+V+ S +I + LD + PV GGLYDPALG + E
Sbjct: 11 SIAGVDFGVYTDEDVKAISVKRIHNTPTLDSFNNPVPGGLYDPALGAWGDHVALYAIVGE 70
Query: 55 G----------TICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHF 104
G C TC +C GH GHI+L VYN F+ +++LL+ C YC F
Sbjct: 71 GFQVRTRLLTSLSCTTCRLNAWSCTGHSGHIELPVHVYNLTHFDQMYRLLRAQCVYCHRF 130
Query: 105 RIHRGQVDKCVKQLELIVKGDIVGAKRLDSV 135
++ R Q++ +L L+ G + LD +
Sbjct: 131 QMSRTQINAYECKLRLLQYGLVDELVELDQI 161
>A5E6J4_LODEL (tr|A5E6J4) DNA-directed RNA polymerase OS=Lodderomyces
elongisporus GN=LELG_05233 PE=3 SV=1
Length = 1745
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCG 62
+SI + F ++ EE+R S KI P D R GGL DP LG + C+TCG
Sbjct: 13 KSIKEVQFGLMSPEEIRAISVAKIVYPETFDQATKRFKEGGLNDPRLGSIDRNYKCQTCG 72
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ ++ CPGH GHI+L PV++ + K+L+ CF+C
Sbjct: 73 EDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHC 111
>D7DU74_METVO (tr|D7DU74) DNA-directed RNA polymerase subunit A' OS=Methanococcus
voltae A3 GN=Mvol_1027 PE=4 SV=1
Length = 888
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 2/125 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I +ITF L+ E+ R S KI D P+ GGL D LG + G +CK+CG
Sbjct: 8 KEIGNITFGLLSPEQTRIMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCGG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
R+ CPGH GHI+L PV + ++K+L+ TC +C + + + ++++E +++
Sbjct: 68 RVGTCPGHFGHIELSKPVVHIGFAKDIYKILKATCPHCGKVTLSESRKAEYLEKMEKLLE 127
Query: 124 --GDI 126
GD+
Sbjct: 128 DGGDM 132
>Q2NEK4_METST (tr|Q2NEK4) RpoA1 OS=Methanosphaera stadtmanae (strain DSM 3091)
GN=rpoA1 PE=4 SV=1
Length = 873
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 17/140 (12%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G + + I F ++ E +RK S KI P D P+ GL DP LG + G C+T
Sbjct: 3 GIIKKVSEIDFGLMSPEVIRKMSVTKIVTPDTYDEDGYPIESGLMDPRLGVIDPGLKCRT 62
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC----------------FHF 104
CG + +C GH GHI+ PV + + +HK+L+ TC C
Sbjct: 63 CGSKGGDCQGHFGHINFARPVIHVGFADTIHKILRSTCRKCGRVLLTDTEKLEYKDKLEE 122
Query: 105 RIHRGQ-VDKCVKQLELIVK 123
RI G+ + K +KQ+ L K
Sbjct: 123 RIENGEDISKILKQIHLAAK 142
>D2EG07_9EURY (tr|D2EG07) RNA polymerase Rpb1 domain 1 OS=Candidatus Parvarchaeum
acidiphilum ARMAN-4 GN=BJBARM4_0690 PE=4 SV=1
Length = 317
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I S+ F ++ + ++K S V IT L D+ PV GGL D +G G CKTCG +
Sbjct: 12 IASLEFGIMSPKYIQKMSSVSITSSELYDIDGFPVDGGLSDLRMGVTDPGLTCKTCGNTI 71
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL-ELIVKG 124
+CPGH GH+DL PV+N +++ ++ TC C I D+ +K+L E I+
Sbjct: 72 RDCPGHFGHLDLARPVFNIKTVPYVYNIVNSTCNSCGRILIS----DEHLKKLSEDIISA 127
Query: 125 DI 126
DI
Sbjct: 128 DI 129
>B9WN64_CANDC (tr|B9WN64) DNA-directed RNA polymerase OS=Candida dubliniensis
(strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
GN=CD36_35480 PE=3 SV=1
Length = 1735
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EEVR S KI P +D RP GGL DP LG + C+TCG+
Sbjct: 14 SVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCGE 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + K + C +C
Sbjct: 74 DMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>Q8ZYQ8_PYRAE (tr|Q8ZYQ8) DNA-directed RNA polymerase subunit A' (RpoA1)
OS=Pyrobaculum aerophilum GN=PAE0666 PE=4 SV=1
Length = 884
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 63/113 (55%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ E +RK+S +++T + D PV GG+ D LG G+ C+TCGQ
Sbjct: 15 IKSIKFGVLSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPGSRCETCGQTH 74
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
CPGH GHI+LV PV + ++ +L+ TC C + ++++ ++L
Sbjct: 75 DVCPGHFGHIELVKPVIHVGFARIIYDVLRATCPNCGRIMLRDEEIERYRERL 127
>A8B7R7_GIALA (tr|A8B7R7) DNA-directed RNA polymerase OS=Giardia lamblia ATCC
50803 GN=GL50803_23496 PE=3 SV=1
Length = 2142
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 70/134 (52%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
+ S+ +T S +++++RK + ++ + LD V P+ GG YDPA+GP +C+TCG
Sbjct: 7 SASLSGLTLSAYSEDDIRKLATCRVVTEQGLDNVGLPIRGGYYDPAMGPRLFYDVCETCG 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIV 122
R +CPGH G+++L YN F + +L + C C F I Q L L+
Sbjct: 67 LRWKHCPGHAGYVELPVYCYNHFFFRYTLQLYKLVCHSCHRFLITELQALTIETGLLLLD 126
Query: 123 KGDIVGAKRLDSVL 136
G + ++ S+L
Sbjct: 127 AGLVCDMHQIFSIL 140
>C4YN85_CANAL (tr|C4YN85) DNA-directed RNA polymerase OS=Candida albicans
GN=CAWG_02325 PE=3 SV=1
Length = 1742
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EEVR S KI P +D RP GGL DP LG + C+TCG+
Sbjct: 14 SVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCGE 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + K + C +C
Sbjct: 74 DMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>Q5ACI7_CANAL (tr|Q5ACI7) DNA-directed RNA polymerase OS=Candida albicans
GN=RPO21 PE=3 SV=1
Length = 1728
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLD-LVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EEVR S KI P +D RP GGL DP LG + C+TCG+
Sbjct: 14 SVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLGSIDRNFRCQTCGE 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + K + C +C
Sbjct: 74 DMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHC 111
>Q9LVH0_ARATH (tr|Q9LVH0) DNA-directed RNA polymerase OS=Arabidopsis thaliana
GN=At5g60040 PE=3 SV=1
Length = 1383
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI FS L+D EV K + V++ + L D +P GL DP +GP ++ +IC TC
Sbjct: 23 IKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGNF 82
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
NCPGH G++ L PVYN FNF+ +L+ C C
Sbjct: 83 QNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRC 118
>D5EA57_METMS (tr|D5EA57) DNA-directed RNA polymerase, subunit A'
OS=Methanohalophilus mahii (strain ATCC 35705 / DSM 5219
/ SLP) GN=Mmah_0531 PE=4 SV=1
Length = 886
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 56/114 (49%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I +I F L+ E+RK S I D P+ GL D LG + G CKTCG
Sbjct: 15 QRIGAIRFGLLSPREIRKMSVTSIITADTYDDDGYPIDMGLMDLRLGVIDPGLKCKTCGG 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQ 117
R CPGH GHI+LV+PV + + K+L+ TC C H + Q + Q
Sbjct: 75 RAGECPGHFGHIELVAPVLHVGFNKIIRKILRSTCRNCSHLLLEDKQKKAYINQ 128
>Q6LXI8_METMP (tr|Q6LXI8) RNA polymerase, alpha subunit OS=Methanococcus
maripaludis GN=rpoA1 PE=4 SV=1
Length = 889
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I ITF L+ E++R S KI D P+ GGL D LG + G +CK+C
Sbjct: 8 KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
R+ CPGH GHI+L PV + ++K+L+ C +C I + D+ LE + K
Sbjct: 68 RVGTCPGHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEIKRDEY---LEKMAK 124
Query: 124 GDIVGAKRLDSVLPSETLYPEESDGSH-ESCSTVHSGAQ------CHNGEHMKQKEWTSL 176
+ G D + L E + GS SC V + + H + QK+ TS
Sbjct: 125 LEEDGG---DPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGKAQKQLTS- 180
Query: 177 QFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMF 211
SE +L + CK G +N + +P F
Sbjct: 181 --SEVREILEKI---PAEDCKLLG-INAKVARPEF 209
>A1RSE8_PYRIL (tr|A1RSE8) DNA-directed RNA polymerase, subunit A' OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=Pisl_0702
PE=4 SV=1
Length = 884
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ E +RK+S +++T + D PV GG+ D LG G C+TCGQ
Sbjct: 15 IKSIKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGVADRRLGVAEPGARCETCGQTH 74
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CPGH GHI+LV PV + ++ +L+ TC C
Sbjct: 75 DVCPGHFGHIELVKPVIHVGFARIIYDILRTTCPNC 110
>B6AA07_CRYMR (tr|B6AA07) DNA-directed RNA polymerase OS=Cryptosporidium muris
(strain RN66) GN=CMU_041180 PE=3 SV=1
Length = 1981
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 11 FSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPG 70
F L+ EV+K S I + GGL+DP++GPL C TCG R + CPG
Sbjct: 15 FELLSASEVKKISVCHIVSSITFESTGDAKRGGLHDPSMGPLDIRDFCTTCGGR-SECPG 73
Query: 71 HCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
H GHI+L PVY+PL L LL+ C++C RI + +K+L L+
Sbjct: 74 HIGHIELELPVYHPLYIRQLVNLLKSICWHCCTLRICQDTCKDYIKRLFLL 124
>B1YC25_THENV (tr|B1YC25) DNA-directed RNA polymerase subunit A' OS=Thermoproteus
neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)
GN=Tneu_1964 PE=4 SV=1
Length = 884
Score = 78.2 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
++I SI F L+ E +RK+S +++T + D PV GG+ D LG G C+TCGQ
Sbjct: 13 KAIKSIKFGILSPEMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVAEPGARCETCGQ 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CPGH GH++LV PV + ++ +L+ TC C
Sbjct: 73 THDVCPGHFGHVELVKPVIHVEYARIIYDVLRTTCPNC 110
>B9PNT4_TOXGO (tr|B9PNT4) DNA-directed RNA polymerase OS=Toxoplasma gondii
GN=TGGT1_044930 PE=3 SV=1
Length = 2626
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRL-LD------------LVDR-----PVLGGLYD 46
S+ S + + + +EVR S KI+D + LD R V GGL+D
Sbjct: 11 SVHSASLTLFSQDEVRALSSCKISDTNVFLDPHASSSSLSATFTAARGGGPVAVSGGLHD 70
Query: 47 PALGPLSEGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
LG L IC+TCG R ++CPGH GHIDL PV+ P+ L K+L+ +C +C R+
Sbjct: 71 SRLGSLDGREICETCGCR-SDCPGHLGHIDLALPVFQPIFLPSLVKVLKLSCLHCERLRV 129
Query: 107 HRGQVDKCVKQLELIVKG 124
VK EL+ G
Sbjct: 130 STPAASLFVKAFELLQLG 147
>B9QJU7_TOXGO (tr|B9QJU7) DNA-directed RNA polymerase OS=Toxoplasma gondii VEG
GN=TGVEG_104680 PE=3 SV=1
Length = 2676
Score = 77.8 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRL-LD------------LVDR-----PVLGGLYD 46
S+ S + + + +EVR S KI+D + LD R V GGL+D
Sbjct: 11 SVHSASLTLFSQDEVRALSSCKISDTNVFLDPHASSSSLSATFTAARGGGPVAVSGGLHD 70
Query: 47 PALGPLSEGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
LG L IC+TCG R ++CPGH GHIDL PV+ P+ L K+L+ +C +C R+
Sbjct: 71 SRLGSLDGREICETCGCR-SDCPGHLGHIDLALPVFQPIFLPSLVKVLKLSCLHCERLRV 129
Query: 107 HRGQVDKCVKQLELIVKG 124
VK EL+ G
Sbjct: 130 STPAASLFVKAFELLQLG 147
>B6KG86_TOXGO (tr|B6KG86) DNA-directed RNA polymerase OS=Toxoplasma gondii ME49
GN=TGME49_044880 PE=3 SV=1
Length = 2768
Score = 77.8 bits (190), Expect = 8e-13, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRL-LD------------LVDR-----PVLGGLYD 46
S+ S + + + +EVR S KI+D + LD R V GGL+D
Sbjct: 11 SVHSASLTLFSQDEVRALSSCKISDTNVFLDPHASSSSLSATFTAARGGGPVAVSGGLHD 70
Query: 47 PALGPLSEGTICKTCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
LG L IC+TCG R ++CPGH GHIDL PV+ P+ L K+L+ +C +C R+
Sbjct: 71 SRLGSLDGREICETCGCR-SDCPGHLGHIDLALPVFQPIFLPSLVKVLKLSCLHCERLRV 129
Query: 107 HRGQVDKCVKQLELIVKG 124
VK EL+ G
Sbjct: 130 STPAASLFVKAFELLQLG 147
>A2SSM4_METLZ (tr|A2SSM4) DNA-directed RNA polymerase, subunit A'
OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z) GN=Mlab_1161 PE=4 SV=1
Length = 889
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
+ + I I F L+ + +R S K+ P D P GL DP+LG + G CKTC
Sbjct: 3 SPKRIGKIEFGILSPKAIRDMSVCKVIWPDTYDDDGFPYPKGLMDPSLGVIDPGLRCKTC 62
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDK 113
GQ+ +CPGH GHIDL PV + + KLL+ TC C + + ++++
Sbjct: 63 GQKQGDCPGHFGHIDLAKPVIHVGYTRLIRKLLRVTCRDCGRLLLDKEEIER 114
>C7YI77_NECH7 (tr|C7YI77) DNA-directed RNA polymerase OS=Nectria haematococca
(strain 77-13-4 / FGSC 9596 / MPVI) GN=NECHADRAFT_103209
PE=3 SV=1
Length = 1750
Score = 77.4 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDL-VDRPVLGGLYDPALGPLSEGTICKTCG 62
++++ I F ++ EE++ S I P ++ +P GGL DP LG + CKTC
Sbjct: 14 KTVEEIQFGLMSPEEIKNMSVCHILYPETMEENKTKPRDGGLNDPLLGSIDRQFRCKTCT 73
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
Q + CPGH GHI+L PVY+P + K+L+ C C
Sbjct: 74 QAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNC 112
>B5IGJ6_ACIB4 (tr|B5IGJ6) DNA-directed RNA polymerase subunit A'
OS=Aciduliprofundum boonei (strain DSM 19572 / T469)
GN=ABOONEI_1368 PE=4 SV=1
Length = 895
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G T+ I+SI F+ L+ EE+R+ S VK+ D P+ GL D +G + G CKT
Sbjct: 7 GLTKRINSIKFALLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVIEPGLRCKT 66
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CG ++ CPGH GHI+L PV + + L TC C ++ +++ +++E
Sbjct: 67 CGGKVDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLKDDEIEIYKQKIE 125
>D3T9X0_ACIB4 (tr|D3T9X0) DNA-directed RNA polymerase subunit A'
OS=Aciduliprofundum boonei (strain DSM 19572 / T469)
GN=Aboo_1090 PE=4 SV=1
Length = 895
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G T+ I+SI F+ L+ EE+R+ S VK+ D P+ GL D +G + G CKT
Sbjct: 7 GLTKRINSIKFALLSPEEIRRMSAVKVITADTYDDDGFPIDKGLMDLHMGVIEPGLRCKT 66
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CG ++ CPGH GHI+L PV + + L TC C ++ +++ +++E
Sbjct: 67 CGGKVDECPGHFGHIELAMPVIHVGFVKNIKNYLDATCRECGRIKLKDDEIEIYKQKIE 125
>A0B558_METTP (tr|A0B558) DNA-directed RNA polymerase, subunit A' OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_0029 PE=4
SV=1
Length = 876
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 60/118 (50%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F ++ +E RK S VK+ D P+ GL DP LG + G C+TCG
Sbjct: 5 KRIGKIRFGLISPQEFRKMSVVKVITADTYDDDGFPIEMGLMDPRLGVIDPGLRCRTCGG 64
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
R CPGH GHIDLV+PV + + K+L+ C C + + + ++Q+ +
Sbjct: 65 RPGECPGHFGHIDLVAPVIHVGFAKLIRKILRAICRECSKLMLSELEKKEFLRQIRTL 122
>Q0W8G9_UNCMA (tr|Q0W8G9) DNA-directed RNA polymerase, subunit A1 OS=Uncultured
methanogenic archaeon RC-I GN=rpoA1 PE=4 SV=1
Length = 877
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 58/116 (50%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F L+ E+RK S KI D P+ GL DP LG + G C+TCG
Sbjct: 5 KRIKKIRFGLLSPAEIRKMSVTKIITADTYDDDGYPIDMGLMDPRLGVIDPGLRCRTCGG 64
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
R CPGH GHI+L +PV + L K+L+ TC C + + ++Q++
Sbjct: 65 RPGECPGHFGHIELAAPVIHVGFARLLRKVLRTTCRKCGRLLMDEKTKAEYLRQIQ 120
>D1Z499_SORMA (tr|D1Z499) DNA-directed RNA polymerase OS=Sordaria macrospora
GN=SMAC_05005 PE=3 SV=1
Length = 1761
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
++ I F L+ EE++ S I P +D +P GGL DP LG + CKTC +
Sbjct: 15 TVKEIQFGLLSPEEIKSMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDRQFKCKTCTE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
++ CPGH GHI+L PVY+P + K+L+ C C
Sbjct: 75 NMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNC 112
>A4FWF6_METM5 (tr|A4FWF6) DNA-directed RNA polymerase, subunit A'
OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333)
GN=MmarC5_0215 PE=4 SV=1
Length = 889
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I ITF L+ E++R S KI D P+ GGL D LG + G +CK+C
Sbjct: 8 KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
R+ CPGH GHI+L PV + ++K+L+ C +C I + D+ LE + K
Sbjct: 68 RVGTCPGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVAITELKRDEY---LEKMAK 124
Query: 124 GDIVGAKRLDSVLPSETLYPEESDGSH-ESCSTVHSGAQ------CHNGEHMKQKEWTSL 176
+ G D + L E + GS SC V + + H + QK+ TS
Sbjct: 125 LEEDGG---DPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYHQLDGKAQKQLTS- 180
Query: 177 QFSEATSVLNTFLMPKFKKCKNCGAVNPNITKPMF 211
SE +L + C+ G +N + +P F
Sbjct: 181 --SEVREILEKI---PAEDCRLLG-INAKVARPEF 209
>A7TPB9_VANPO (tr|A7TPB9) DNA-directed RNA polymerase OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294)
GN=Kpol_1019p27 PE=3 SV=1
Length = 364
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
+I + F + EEVR S KI P +D R +GGL DP LG + C+TC +
Sbjct: 13 TIKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNVKCQTCQE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI--HRGQVDKCVK 116
+ CPGH GHIDL PV++ + + K+ + C +C + H Q+++ +K
Sbjct: 73 GMNECPGHFGHIDLAKPVFHIGFISKIKKVCECVCMHCGKLLLDEHNEQMNQAIK 127
>Q9YAU1_AERPE (tr|Q9YAU1) DNA-directed RNA polymerase subunit A OS=Aeropyrum
pernix GN=rpoA1 PE=4 SV=2
Length = 891
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 51/99 (51%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
T +D I F L+ E+R+ + V + L + PV GGL DP G + G C CG
Sbjct: 11 TNLLDKILFGVLSPHEIRQLAKVTVVRGDLYEADGTPVSGGLRDPHFGAIEPGERCPVCG 70
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CPGH G I+L PV P ++++K+LQ TC C
Sbjct: 71 NSREECPGHFGKIELARPVLIPHYTDYVYKILQATCRVC 109
>A9A9V0_METM6 (tr|A9A9V0) DNA-directed RNA polymerase subunit A' OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=MmarC6_1310
PE=4 SV=1
Length = 889
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I ITF L+ E++R S KI D P+ GGL D LG + G +CK+C
Sbjct: 8 KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
R+ CPGH GHI+L PV + ++K+L+ C +C I + D+ ++++
Sbjct: 68 RVGTCPGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVTITEIKRDEYLEKM 122
>A6VGU9_METM7 (tr|A6VGU9) DNA-directed RNA polymerase subunit A' OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=MmarC7_0608
PE=4 SV=1
Length = 889
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I ITF L+ E++R S KI D P+ GGL D LG + G +CK+C
Sbjct: 8 KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
R+ CPGH GHI+L PV + ++K+L+ C +C I + D+ ++++
Sbjct: 68 RVGTCPGHFGHIELSKPVIHIGFAKDIYKILKAVCPHCGKVTITEIKRDEYLEKM 122
>D7E757_9EURY (tr|D7E757) DNA-directed RNA polymerase subunit A'
OS=Methanohalobium evestigatum Z-7303 GN=Metev_0781 PE=4
SV=1
Length = 881
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
+ I F L+ EVRK S I D P+ GL D LG + G ICKTCG R
Sbjct: 11 VGEIRFGLLSPREVRKMSVTPIITADTYDDDGYPIDMGLMDMRLGVIDPGLICKTCGSRA 70
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
+CPGH GHI+LV+PV + + K L+ C C +F + + ++ ++QL+
Sbjct: 71 GDCPGHFGHIELVAPVIHVGFNKLILKSLRSICRNCSNFLLEPQRKNEYLEQLQ 124
>A4WN99_PYRAR (tr|A4WN99) DNA-directed RNA polymerase, subunit A' OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_2322
PE=4 SV=1
Length = 884
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ E +RK+S +++T + D PV GG+ D LG G C+TCGQ
Sbjct: 15 IKSIKFGVLSPEVIRKYSVMEVTTSEVYDEGGLPVRGGISDRRLGVAEPGARCETCGQTH 74
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
CPGH GHI+LV PV + ++ +L+ TC C + ++ + ++L + K
Sbjct: 75 DVCPGHFGHIELVKPVVHVGFARVIYDILRTTCPNCGRIMLRDEEIARYRERLTRLSK 132
>A6UV50_META3 (tr|A6UV50) DNA-directed RNA polymerase subunit A' OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0789
PE=4 SV=1
Length = 888
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F L+ E +RK S KI D P+ GGL D LG + G +CKTCG
Sbjct: 8 KEIGGIVFGLLSPEYIRKISVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKTCGG 67
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
R+ CPGH GHI+L P + ++K+L+ C +C + + + +K++E +
Sbjct: 68 RVGTCPGHFGHIELSKPAVHIGYAKDIYKILKAVCPHCGKVALSETRRMEYLKKMETL 125
>Q2HDK0_CHAGB (tr|Q2HDK0) DNA-directed RNA polymerase OS=Chaetomium globosum
GN=CHGG_01704 PE=3 SV=1
Length = 1756
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
+I I F L+ EE++ S I P +D +P GGL DP LG + CKTC +
Sbjct: 15 TIKEIQFGLLSPEEIKGMSVCHIVYPETMDESRTKPRDGGLNDPLLGSVDRQFKCKTCTE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+T CPGH GHI+L PV++P + KLL+ C C
Sbjct: 75 NMTECPGHFGHIELSRPVFHPGFIRRVKKLLEMVCHNC 112
>A3GID7_PICST (tr|A3GID7) DNA-directed RNA polymerase OS=Pichia stipitis GN=RPO21
PE=3 SV=2
Length = 1739
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDR-PVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EEVR S KI P +D + P GGL DP LG + C+TCG+
Sbjct: 14 SVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLGSIDRNFRCQTCGE 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + K+ + C +C
Sbjct: 74 DMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHC 111
>A7EKT1_SCLS1 (tr|A7EKT1) DNA-directed RNA polymerase OS=Sclerotinia sclerotiorum
(strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_05928 PE=3
SV=1
Length = 1746
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
+I I F + EE++ S I P +D +P GL DP LG + C TC Q
Sbjct: 15 TIQEIQFGLFSPEEIKNMSVAHILYPETMDESKMKPREQGLNDPRLGSIDRQFKCATCDQ 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHR 108
++ CPGH GHI+L PVY+P KLL+ C C ++ R
Sbjct: 75 NMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDR 119
>C4R4Y0_PICPG (tr|C4R4Y0) DNA-directed RNA polymerase OS=Pichia pastoris (strain
GS115) GN=PAS_chr3_0568 PE=3 SV=1
Length = 1743
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLV-DRPVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EE+R S VKI P ++D RP GGL DP LG + C+TCG+
Sbjct: 13 SVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSIDRNFKCQTCGE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GH++L PV++ + K+ + C C
Sbjct: 73 GMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNC 110
>A3DMP4_STAMF (tr|A3DMP4) DNA-directed RNA polymerase, subunit A'
OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1) GN=Smar_0803 PE=4 SV=1
Length = 886
Score = 75.5 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I +I F L+ EE+RK S I + D P+ GG+ D LG + +C CG
Sbjct: 9 ISAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPVCGNTR 68
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
+CPGH GHI+L PV + +H L+ TC C +I D+ + LEL+
Sbjct: 69 ESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKE---DERKRYLELL 121
>A3MXZ0_PYRCJ (tr|A3MXZ0) DNA-directed RNA polymerase, subunit A' OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=Pcal_2092 PE=4
SV=1
Length = 884
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 62/114 (54%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ + +RK+S +++T + D PV GG+ D LG G C+TCGQ
Sbjct: 15 IKSIRFGILSPDMIRKYSVMEVTTSEVYDEGGLPVRGGIADRRLGVSEPGARCETCGQTH 74
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
CPGH GHI+LV PV + ++ +L+ TC C + ++ + ++L+
Sbjct: 75 DVCPGHFGHIELVKPVIHVGYARIIYDVLRATCPNCGRIMLKDEEIKRYKERLD 128
>Q5KGG3_CRYNE (tr|Q5KGG3) DNA-directed RNA polymerase OS=Cryptococcus neoformans
GN=CNBE3710 PE=3 SV=1
Length = 1786
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 56/103 (54%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ + I F ++ EE++ S KI +LD + +GGL DP +G + C+TC +
Sbjct: 13 KQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGTIDRNFKCQTCLE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI 106
++ CPGH GHI+L PV++ + K+L+ C+ C ++
Sbjct: 73 GMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKV 115
>Q4N7L1_THEPA (tr|Q4N7L1) DNA-directed RNA polymerase OS=Theileria parva
GN=TP01_0809 PE=3 SV=1
Length = 1996
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGG--LYDPALGPLSEGTICKTCGQ 63
++ ++FSFL+ E++ S +I + +D G +YDP++G +C TC +
Sbjct: 12 VNGLSFSFLSSAEIKSLSCSEIKNA---GRIDHESAGKSCIYDPSMGSTEIYRLCSTCNE 68
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+TNC GH GHI+ P+++P++ N L KLL+ CFYC + R+ ++K E
Sbjct: 69 -MTNCDGHLGHINFAIPLFHPMMINSLCKLLKAVCFYCGNLRLKHRTLEKFTVLFEASQS 127
Query: 124 GDIVGAKRLDSVL 136
++ LD +L
Sbjct: 128 ENMRDMIILDKIL 140
>D7DAF3_9CREN (tr|D7DAF3) DNA-directed RNA polymerase subunit A'
OS=Staphylothermus hellenicus DSM 12710 GN=Shell_1664
PE=4 SV=1
Length = 886
Score = 75.1 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 55/113 (48%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I +I F L+ EE+RK S I + D P+ GG+ D LG + +C CG
Sbjct: 9 ISAIKFGILSPEEIRKMSVTTIITSEVYDNDGAPIDGGVMDRRLGAIEPREVCPVCGNTR 68
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
+CPGH GHI+L PV + +H L+ TC C +I + K ++ L
Sbjct: 69 ESCPGHFGHIELARPVIHVSFVKHIHMYLKTTCRVCGRIKIKEEERKKYLELL 121
>Q8PUR1_METMA (tr|Q8PUR1) DNA-directed RNA polymerase subunit A'
OS=Methanosarcina mazei GN=MM_2271 PE=4 SV=1
Length = 880
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 58/118 (49%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I SI F ++ +E+RK S I D P+ GL D LG + G CKTC
Sbjct: 9 KRISSIKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSG 68
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELI 121
R CPGH GHI+LV+PV + + KLL+ TC C + Q + + QL +
Sbjct: 69 RAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSKILLEPAQKQQFLDQLTAV 126
>A4ZQ02_BEABA (tr|A4ZQ02) DNA-directed RNA polymerase (Fragment) OS=Beauveria
bassiana PE=3 SV=1
Length = 119
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDR-PVLGGLYDPALGPLSEGTICKTCG 62
++++ I F L+ EE++ S I P ++ P GGL DP LG + CKTC
Sbjct: 14 KTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDRQFKCKTCS 73
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
Q ++ CPGH GHI+L PVY+P + K+L+ C C
Sbjct: 74 QPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNC 112
>Q6L2F9_PICTO (tr|Q6L2F9) DNA-directed RNA polymerase subunit A' OS=Picrophilus
torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 /
NBRC 100828) GN=PTO0258 PE=4 SV=1
Length = 886
Score = 74.7 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 3 TESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCG 62
++ I I F+ L+ +E+RK S VK+ P D P+ GL D +G + G C TCG
Sbjct: 7 SKRIKDIKFALLSPDEIRKMSQVKVITPDTYDDDGYPIDKGLMDLHMGVIEPGLRCATCG 66
Query: 63 QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
++ CPGH GHI+L PV + + +L +C C ++ +++ K +E
Sbjct: 67 GKVDECPGHFGHIELAMPVVHVGFVKEIKTMLDSSCKVCGRIKLTDEEIENYKKSIE 123
>A6SI63_BOTFB (tr|A6SI63) DNA-directed RNA polymerase OS=Botryotinia fuckeliana
(strain B05.10) GN=BC1G_12445 PE=3 SV=1
Length = 1742
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
+I I F + EE++ S I P +D +P GL DP LG + C TC Q
Sbjct: 15 TIQEIQFGLFSPEEIKNMSVCHILYPETMDESKMKPREQGLNDPRLGSIDRQFKCATCDQ 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHR 108
++ CPGH GHI+L PVY+P KLL+ C C ++ R
Sbjct: 75 NMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDR 119
>Q8TRB7_METAC (tr|Q8TRB7) DNA-directed RNA polymerase, subunit A
OS=Methanosarcina acetivorans GN=rpoA1 PE=4 SV=1
Length = 880
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 56/113 (49%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F ++ +E+RK S I D P+ GL D LG + G CKTC R
Sbjct: 11 IASIKFGLMSPKEIRKMSATPIITADTYDDDGFPIDMGLMDTKLGVIDPGLRCKTCSGRA 70
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
CPGH GHI+LV+PV + + KLL+ TC C + Q + + QL
Sbjct: 71 GECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLEPAQKQQFLDQL 123
>B0R8D4_HALS3 (tr|B0R8D4) DNA-directed RNA polymerase subunit A' (Subunit A)
OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671
/ R1) GN=rpoA1 PE=4 SV=1
Length = 971
Score = 74.3 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 58/118 (49%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
A + I I+F + EE R S K+ D P+ GL DP LG + G CKTC
Sbjct: 6 APKEIGEISFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLECKTC 65
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
GQR C GH GHI+L +PV + + +LL+ TC C + + D+ + L+
Sbjct: 66 GQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENLD 123
>B8GDV8_METPE (tr|B8GDV8) DNA-directed RNA polymerase subunit A'
OS=Methanosphaerula palustris (strain ATCC BAA-1556 /
DSM 19958 / E1-9c) GN=Mpal_2161 PE=4 SV=1
Length = 880
Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I I F L+ +E+R S KI D P GL D +LG + G CKTC Q
Sbjct: 5 KRIGKIEFGLLSPKEIRTMSVRKIIWADTYDDDGFPYPQGLMDLSLGVIDPGLRCKTCDQ 64
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+ +CPGH GHI+L PV + + KLL+ TC C + +++K E +
Sbjct: 65 KAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRECGRLLLSSSEIEKVTITSEEDLT 124
Query: 124 GDIVGAK 130
GD++ K
Sbjct: 125 GDVLSEK 131
>A5ULN6_METS3 (tr|A5ULN6) DNA-dependent RNA polymerase, subunit A', RpoA
OS=Methanobrevibacter smithii (strain PS / ATCC 35061 /
DSM 861) GN=Msm_0909 PE=4 SV=1
Length = 894
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G + I I F ++ E++R+ S VKI P D P+ GL DP LG + C++
Sbjct: 3 GFIKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKCRS 62
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CG R C GH G I+L PV + + +HK+L+ TC C
Sbjct: 63 CGYRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNEC 103
>D2ZPW9_METSM (tr|D2ZPW9) DNA-directed RNA polymerase subunit A
OS=Methanobrevibacter smithii DSM 2374 GN=METSMIF1_02892
PE=4 SV=1
Length = 894
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G + I I F ++ E++R+ S VKI P D P+ GL DP LG + C++
Sbjct: 3 GFIKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKCRS 62
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CG R C GH G I+L PV + + +HK+L+ TC C
Sbjct: 63 CGYRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNEC 103
>B9AEP6_METSM (tr|B9AEP6) Putative uncharacterized protein OS=Methanobrevibacter
smithii DSM 2375 GN=METSMIALI_00829 PE=4 SV=1
Length = 894
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 53/101 (52%)
Query: 1 GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKT 60
G + I I F ++ E++R+ S VKI P D P+ GL DP LG + C++
Sbjct: 3 GFIKKIKQINFGLMSPEDIREMSVVKIETPDTYDEDGYPIENGLMDPHLGVIDPSLKCRS 62
Query: 61 CGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
CG R C GH G I+L PV + + +HK+L+ TC C
Sbjct: 63 CGYRGGECQGHFGSIELARPVIHVGFGDIIHKILRSTCNEC 103
>A1CNZ4_ASPCL (tr|A1CNZ4) DNA-directed RNA polymerase OS=Aspergillus clavatus
GN=ACLA_020720 PE=3 SV=1
Length = 1765
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
++ I F + EE+++ S V + P +D RP GL DP LG + C+TC +
Sbjct: 15 TVKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDRQWNCETCEE 74
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
CPGH GHI+L +PV++ + KLL+ C C + Q D K LE +
Sbjct: 75 GQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTNQSDS--KFLEALRM 132
Query: 124 GDIVGAKRLD-------SVLPSETLYPEESDG--SHESCSTVHSGAQCHNGEHMKQKEWT 174
D +R D VL E P + D S ES V C N + +KE
Sbjct: 133 RD--PKRRFDHIWRLSKDVLICEADPPADEDEPFSKESSKPVRRHGGCGNAQPTIRKEGI 190
Query: 175 SL 176
+L
Sbjct: 191 TL 192
>Q6CL79_KLULA (tr|Q6CL79) DNA-directed RNA polymerase OS=Kluyveromyces lactis
GN=KLLA0F05071g PE=3 SV=1
Length = 1720
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
+I + F + EEVR S KI P +D + +GGL DP LG + C+TCG+
Sbjct: 13 TIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDRNYKCQTCGE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + + K+ + C +C
Sbjct: 73 GMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHC 110
>B5RSM9_DEBHA (tr|B5RSM9) DNA-directed RNA polymerase OS=Debaryomyces hansenii
GN=DEHA2A13618g PE=3 SV=1
Length = 1749
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDL-VDRPVLGGLYDPALGPLSEGTICKTCGQ 63
S+ + F L+ EEVR S KI P +D +P GL DP LG + C+TCG+
Sbjct: 14 SVKEVQFGLLSPEEVRAISVAKIEYPETIDQSTKKPREAGLNDPRLGSIDRNFKCQTCGE 73
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ CPGH GHI+L PV++ + K+ + C +C
Sbjct: 74 DMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHC 111
>Q464Y7_METBF (tr|Q464Y7) DNA-directed RNA polymerase, subunit A'
OS=Methanosarcina barkeri (strain Fusaro / DSM 804)
GN=Mbar_A3692 PE=4 SV=1
Length = 880
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 56/115 (48%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ I SI F L+ +E+RK S I D P+ GL D LG + G CKTC
Sbjct: 9 KRISSIKFGLLSPKEIRKMSSTPIITADTYDDDGFPIDMGLMDTRLGVIDPGLRCKTCSG 68
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQL 118
R CPGH GHI+LV+PV + + KLL+ TC C + Q + QL
Sbjct: 69 RAGECPGHFGHIELVAPVVHVGFNKVIRKLLRATCRKCSRLLLDPAQKQHFLDQL 123
>Q84KP6_CYAME (tr|Q84KP6) DNA-directed RNA polymerase OS=Cyanidioschyzon merolae
GN=RPB1 PE=3 SV=1
Length = 1819
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+++ ++ F L+ +E+R+ S V++ + P GG+ DP LG + C TC
Sbjct: 14 KAVGAVQFGLLSPDELRRLSVVRVEYDVAFER-GVPKAGGVLDPRLGAIDRNFPCATCEG 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+CPGH GHI+LV PV+N L+ + + K L+ C+YC
Sbjct: 73 SSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYC 110
>C5E245_LACTC (tr|C5E245) DNA-directed RNA polymerase OS=Lachancea thermotolerans
(strain CBS 6340) GN=KLTH0H02046g PE=3 SV=1
Length = 1740
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
++ + F + EEVR S KI P +D R +GGL DP LG + C+TCG+
Sbjct: 13 TVKEVQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDRNYKCQTCGE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
+ +CPGH GHI+L PV++ + + K+ + C +C
Sbjct: 73 GMNDCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHC 110
>Q6FQS9_CANGA (tr|Q6FQS9) DNA-directed RNA polymerase OS=Candida glabrata
GN=CAGL0I03828g PE=3 SV=1
Length = 1715
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 5 SIDSITFSFLTDEEVRKHSFVKITDPRLLDLVD-RPVLGGLYDPALGPLSEGTICKTCGQ 63
++ + F + EE+R S KI P +D R +GGL DP LG + C+TC +
Sbjct: 13 TVKEVQFGLFSPEEIRAISVAKIRLPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQE 72
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRI--HRGQVDKCVK 116
+ CPGH GHIDL PV++ + K+ + C +C + H Q+ + ++
Sbjct: 73 GMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNEQMRQAIQ 127
>A7S9X0_NEMVE (tr|A7S9X0) DNA-directed RNA polymerase (Fragment)
OS=Nematostella vectensis GN=v1g110478 PE=3 SV=1
Length = 71
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 43/67 (64%)
Query: 17 EEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNCPGHCGHID 76
EEVRK S +IT+P D + P GGLYDP LGP +C TCGQ +CPGH GHI+
Sbjct: 5 EEVRKLSVKRITNPETFDALLHPNHGGLYDPVLGPTDRDDLCGTCGQNNFSCPGHFGHIE 64
Query: 77 LVSPVYN 83
L PVY+
Sbjct: 65 LPLPVYH 71
>A5J2B6_9MICR (tr|A5J2B6) DNA-directed RNA polymerase (Fragment) OS=Vairimorpha
necatrix GN=RPB1 PE=3 SV=1
Length = 1255
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
T+ I SI F + EE+RK S V+I P ++ P GGL D +G +C +C
Sbjct: 6 VTKRISSIQFGLFSPEEIRKSSVVQIIHPETME-NGFPKSGGLIDLKMGTTERAFLCSSC 64
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDK 113
+ +CPGH GHI+L P+++ + K+L+ CFYC +I + K
Sbjct: 65 EKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKK 116
>O96446_9MICR (tr|O96446) DNA-directed RNA polymerase OS=Vairimorpha necatrix
GN=RPB1 PE=3 SV=1
Length = 1605
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 2 ATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTC 61
T+ I SI F + EE+RK S V+I P ++ P GGL D +G +C +C
Sbjct: 6 VTKRISSIQFGLFSPEEIRKSSVVQIIHPETME-NGFPKSGGLIDLKMGTTERAFLCSSC 64
Query: 62 GQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDK 113
+ +CPGH GHI+L P+++ + K+L+ CFYC +I + K
Sbjct: 65 EKDNFSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRLKISTKNLKK 116
>C6A1G0_THESM (tr|C6A1G0) DNA-directed RNA polymerase subunit alpha
OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
GN=TSIB_0389 PE=4 SV=1
Length = 905
Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 58/115 (50%)
Query: 6 IDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRL 65
I SI F L+ +E+RK S +IT P P+ GGL D LG + C+TCG
Sbjct: 8 IGSIEFGVLSPQEIRKMSAAEITVPDTYSEDGYPIDGGLMDRRLGVIDPNLRCETCGANY 67
Query: 66 TNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLEL 120
CPGH GHI+L PV + +++ L+ TC C ++ +++ +L +
Sbjct: 68 KECPGHFGHIELARPVIHVGFAKTIYRTLESTCRECGRIKLTDEEIEDYFGKLNI 122
>A3CS84_METMJ (tr|A3CS84) DNA-directed RNA polymerase subunit A'
OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1) GN=Memar_0300 PE=4 SV=1
Length = 882
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%)
Query: 4 ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQ 63
+ + I F + +E+RK S KI D P GL D LG + G CKTC Q
Sbjct: 5 KRVGRIEFGLFSPKEIRKMSVRKIIWADTYDDDGFPYPQGLMDLNLGVIDPGLRCKTCDQ 64
Query: 64 RLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLELIVK 123
+ +CPGH GHI+L PV + + KLL+ TC C + +V+K + + +
Sbjct: 65 KAADCPGHFGHIELAKPVIHVGYTRLIRKLLRVTCRSCSRLLMTSEEVEKIIGPEDSELA 124
Query: 124 GDIVGAK 130
G+IV K
Sbjct: 125 GEIVSEK 131