Jatropha Genome Database

JcCA0046101.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.20 - phase: 0 /pseudo/partial
         (61 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9SL62_RICCO (tr|B9SL62) Putative uncharacterized protein OS=Ric...    75   3e-12

>B9SL62_RICCO (tr|B9SL62) Putative uncharacterized protein OS=Ricinus communis
          GN=RCOM_0090170 PE=4 SV=1
          Length = 157

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 3  FAGATLAGVECSD*ENRIKTCMRTVTIASADADNAIPFHDEKSEDHWRNFQAPKISIH 60
           + AT AGVECS+ + RI   ++TV    AD DNAIPFHD++S++HWRNF+ PKIS H
Sbjct: 3  LSRATWAGVECSECKKRINMFIKTVMFERADTDNAIPFHDDESDEHWRNFKVPKISKH 60