Jatropha Genome Database
- JcCA0045831.20
BLASTP 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0045831.20 + phase: 1 /TE/partial
(63 letters)
Database: trembl
11,636,205 sequences; 3,746,823,912 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Q9FG26_ARATH (tr|Q9FG26) Non-LTR retroelement reverse transcript... 65 3e-09
Q9SJZ8_ARATH (tr|Q9SJZ8) Putative non-LTR retroelement reverse t... 62 2e-08
Q9FXC8_ARATH (tr|Q9FXC8) F12A21.24 OS=Arabidopsis thaliana PE=4 ... 61 4e-08
B9RU26_RICCO (tr|B9RU26) Putative uncharacterized protein OS=Ric... 60 9e-08
Q2HRR4_MEDTR (tr|Q2HRR4) Ribonuclease H OS=Medicago truncatula G... 59 1e-07
Q2HU20_MEDTR (tr|Q2HU20) Ribonuclease H OS=Medicago truncatula G... 59 2e-07
O82276_ARATH (tr|O82276) Putative non-LTR retroelement reverse t... 59 2e-07
B9HV70_POPTR (tr|B9HV70) Predicted protein OS=Populus trichocarp... 58 4e-07
B9HFN7_POPTR (tr|B9HFN7) Predicted protein OS=Populus trichocarp... 58 4e-07
Q9FMM8_ARATH (tr|Q9FMM8) Non-LTR retroelement reverse transcript... 57 6e-07
Q2HVE2_MEDTR (tr|Q2HVE2) RNA-directed DNA polymerase (Reverse tr... 57 7e-07
O80790_ARATH (tr|O80790) Putative non-LTR retroelement reverse t... 57 8e-07
Q9LQJ0_ARATH (tr|Q9LQJ0) F28G4.15 protein OS=Arabidopsis thalian... 57 9e-07
Q9LNS0_ARATH (tr|Q9LNS0) F1L3.4 OS=Arabidopsis thaliana PE=4 SV=1 57 1e-06
A0MEQ4_ARATH (tr|A0MEQ4) Putative uncharacterized protein (Fragm... 56 1e-06
Q1PEZ4_ARATH (tr|Q1PEZ4) Putative uncharacterized protein OS=Ara... 56 1e-06
Q9ZUY7_ARATH (tr|Q9ZUY7) Putative reverse transcriptase OS=Arabi... 56 1e-06
Q9SI81_ARATH (tr|Q9SI81) F23N19.5 OS=Arabidopsis thaliana PE=4 SV=1 56 1e-06
B9S5J7_RICCO (tr|B9S5J7) Putative uncharacterized protein OS=Ric... 56 1e-06
B9SX78_RICCO (tr|B9SX78) Nuclease, putative OS=Ricinus communis ... 55 2e-06
Q9LDL8_ARATH (tr|Q9LDL8) Putative uncharacterized protein AT4g08... 55 2e-06
Q1SN20_MEDTR (tr|Q1SN20) Polynucleotidyl transferase, Ribonuclea... 55 3e-06
B9IKN0_POPTR (tr|B9IKN0) Predicted protein OS=Populus trichocarp... 55 3e-06
A2Q568_MEDTR (tr|A2Q568) Polynucleotidyl transferase, Ribonuclea... 54 5e-06
>Q9FG26_ARATH (tr|Q9FG26) Non-LTR retroelement reverse transcriptase-like
OS=Arabidopsis thaliana PE=4 SV=1
Length = 676
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 40/62 (64%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ G WL+G +NIG C+A AE WGVY GL +AW GWR L++D ++V
Sbjct: 532 TAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVG 591
Query: 62 VL 63
L
Sbjct: 592 FL 593
>Q9SJZ8_ARATH (tr|Q9SJZ8) Putative non-LTR retroelement reverse transcriptase
OS=Arabidopsis thaliana GN=At2g22350 PE=2 SV=1
Length = 321
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ G W+ G +NIG C+A AE WGVY GL +AWG G R EL++D +++V
Sbjct: 177 TAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVG 236
Query: 62 VL 63
L
Sbjct: 237 FL 238
>Q9FXC8_ARATH (tr|Q9FXC8) F12A21.24 OS=Arabidopsis thaliana PE=4 SV=1
Length = 803
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ G W G +NIG C+A AE WGVY G LAW EL++D +++V
Sbjct: 659 TAGGVIRDGAGNWCGGFALNIGRCSAPLAELWGVYYGFYLAWTKALTRVELEVDSELVVG 718
Query: 62 VL 63
L
Sbjct: 719 FL 720
>B9RU26_RICCO (tr|B9RU26) Putative uncharacterized protein OS=Ricinus communis
GN=RCOM_1460820 PE=4 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
S G + R++EG WL G +G C+ F+A+ WGV GL LAW G++ +L IDP +
Sbjct: 58 SAGSLIRSAEGSWLSGFTHKLGSCSPFKAKLWGVLDGLRLAWDKGFKHVDLVIDPSEAIK 117
Query: 62 V 62
V
Sbjct: 118 V 118
>Q2HRR4_MEDTR (tr|Q2HRR4) Ribonuclease H OS=Medicago truncatula
GN=MtrDRAFT_AC157894g31v2 PE=4 SV=1
Length = 302
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
CGG+ R S+G W+ G IG C+A AE WG+Y GL +AW G ++ D +VL+D+
Sbjct: 227 CGGLLRQSDGTWIKGFSRKIGACDALHAEMWGLYLGLDMAWREGISHLIVESDSKVLIDM 286
Query: 63 L 63
+
Sbjct: 287 V 287
>Q2HU20_MEDTR (tr|Q2HU20) Ribonuclease H OS=Medicago truncatula
GN=MtrDRAFT_AC149491g26v2 PE=4 SV=2
Length = 220
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
CGG+FR+ +GRW+ G IG C+A AE WG+Y GL +AW + ++ D ++L+D+
Sbjct: 77 CGGLFRDLDGRWIKGYTKKIGACDALHAEMWGLYLGLDMAWREHYSHLIVESDSKILIDM 136
Query: 63 L 63
+
Sbjct: 137 I 137
>O82276_ARATH (tr|O82276) Putative non-LTR retroelement reverse transcriptase
OS=Arabidopsis thaliana GN=At2g31080 PE=2 SV=1
Length = 1231
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GG RN +G WL G +NIG C A AE WG Y GL +AW G+R EL +D +++V
Sbjct: 1087 AAGGAIRNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVG 1146
Query: 62 VL 63
L
Sbjct: 1147 FL 1148
>B9HV70_POPTR (tr|B9HV70) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_881256 PE=4 SV=1
Length = 245
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
GGV R+ G W+ G NIG C++ AE W VY GL LAW G+R +L+ D +V+V +
Sbjct: 101 AGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGL 160
Query: 63 L 63
+
Sbjct: 161 I 161
>B9HFN7_POPTR (tr|B9HFN7) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_871904 PE=4 SV=1
Length = 245
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
GGV R+ G W+ G NIG C++ AE W VY GL LAW G+R +L+ D +V+V +
Sbjct: 101 AGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVVGL 160
Query: 63 L 63
+
Sbjct: 161 I 161
>Q9FMM8_ARATH (tr|Q9FMM8) Non-LTR retroelement reverse transcriptase-like protein
OS=Arabidopsis thaliana GN=At5g42905 PE=4 SV=1
Length = 308
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 36/62 (58%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
S GGV R+ EG W G +NIG C+A AE WGVY GL AW EL++D + +V
Sbjct: 164 SAGGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVG 223
Query: 62 VL 63
L
Sbjct: 224 FL 225
>Q2HVE2_MEDTR (tr|Q2HVE2) RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
OS=Medicago truncatula GN=MtrDRAFT_AC148918g30v2 PE=4
SV=2
Length = 729
Score = 57.0 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAW 43
CGG+ R+S+GRW+ G IG C+AF AE WG+Y GL +AW
Sbjct: 653 CGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMAW 693
>O80790_ARATH (tr|O80790) Putative non-LTR retroelement reverse transcriptase
OS=Arabidopsis thaliana GN=At2g07730 PE=2 SV=1
Length = 970
Score = 56.6 bits (135), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ G N +G WL G +NIG C+A AE WG Y GL +AW G+R EL +D +++V
Sbjct: 826 AASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVG 885
Query: 62 VL 63
L
Sbjct: 886 FL 887
>Q9LQJ0_ARATH (tr|Q9LQJ0) F28G4.15 protein OS=Arabidopsis thaliana GN=At1g17390
PE=2 SV=1
Length = 272
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ +G W G +NIG C+A AE WG Y GL++AW G E++ID +++V
Sbjct: 128 TAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVG 187
Query: 62 VL 63
L
Sbjct: 188 FL 189
>Q9LNS0_ARATH (tr|Q9LNS0) F1L3.4 OS=Arabidopsis thaliana PE=4 SV=1
Length = 253
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ +G W G +NIG C+A AE WG Y GL++AW G E++ID +++V
Sbjct: 109 TAGGVVRDGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVG 168
Query: 62 VL 63
L
Sbjct: 169 FL 170
>A0MEQ4_ARATH (tr|A0MEQ4) Putative uncharacterized protein (Fragment)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 315
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
S GGV R+ EG W G +NIG C+A AE WGVY GL +AW E+++D +++V
Sbjct: 170 SAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVG 229
Query: 62 VL 63
L
Sbjct: 230 FL 231
>Q1PEZ4_ARATH (tr|Q1PEZ4) Putative uncharacterized protein OS=Arabidopsis
thaliana GN=At2g27870 PE=4 SV=1
Length = 314
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
S GGV R+ EG W G +NIG C+A AE WGVY GL +AW E+++D +++V
Sbjct: 170 SAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVG 229
Query: 62 VL 63
L
Sbjct: 230 FL 231
>Q9ZUY7_ARATH (tr|Q9ZUY7) Putative reverse transcriptase OS=Arabidopsis thaliana
GN=At2g27870 PE=2 SV=1
Length = 314
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
S GGV R+ EG W G +NIG C+A AE WGVY GL +AW E+++D +++V
Sbjct: 170 SAGGVLRDEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVG 229
Query: 62 VL 63
L
Sbjct: 230 FL 231
>Q9SI81_ARATH (tr|Q9SI81) F23N19.5 OS=Arabidopsis thaliana PE=4 SV=1
Length = 233
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GG RN G W G +NIG C A AE WGVY GL +AW G EL++D +++V
Sbjct: 89 TAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAWDRGITRLELEVDSEMVVG 148
Query: 62 VL 63
L
Sbjct: 149 FL 150
>B9S5J7_RICCO (tr|B9S5J7) Putative uncharacterized protein OS=Ricinus communis
GN=RCOM_0977440 PE=4 SV=1
Length = 149
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 4 GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQV 58
GGVFR+ GR ++G NIGYC+A AE W + GL++AW G R L +D +
Sbjct: 47 GGVFRDYRGRCVVGFMCNIGYCSAIGAELWAAFHGLTIAWNKGLRKLVLAMDSTL 101
>B9SX78_RICCO (tr|B9SX78) Nuclease, putative OS=Ricinus communis
GN=RCOM_0858970 PE=4 SV=1
Length = 113
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 4 GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
GG+FRN G W+ G ++IGYC A EAE W QGL +A G++ L++D Q+LV
Sbjct: 14 GGLFRNEFGDWIGGYVVHIGYCTAIEAELWAALQGLLIARRRGYQRLVLEVDSQLLV 70
>Q9LDL8_ARATH (tr|Q9LDL8) Putative uncharacterized protein AT4g08830
OS=Arabidopsis thaliana GN=AT4g08830 PE=2 SV=1
Length = 947
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 2 SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
+ GGV R+ G W G ++IG C+A AE WGVY GL +AW + EL++D +++V
Sbjct: 865 TTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGLYMAWERRFTRVELEVDSELVVG 924
Query: 62 VL 63
L
Sbjct: 925 FL 926
>Q1SN20_MEDTR (tr|Q1SN20) Polynucleotidyl transferase, Ribonuclease H fold
OS=Medicago truncatula GN=MtrDRAFT_AC139526g39v2 PE=4
SV=2
Length = 282
Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 30/41 (73%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAW 43
CGG+ R+S+GRW+ G IG C+AF AE WG+Y GL +AW
Sbjct: 206 CGGLLRDSDGRWIKGYFKKIGMCDAFHAEMWGMYLGLDMAW 246
>B9IKN0_POPTR (tr|B9IKN0) Predicted protein OS=Populus trichocarpa
GN=POPTRDRAFT_910909 PE=4 SV=1
Length = 245
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 3 CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
GGV R G W+ G NI C++ AE W VY GL LAW G+R +L+ D +V+V
Sbjct: 101 AGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAWDRGFRKVDLESDSKVVV 158
>A2Q568_MEDTR (tr|A2Q568) Polynucleotidyl transferase, Ribonuclease H fold
OS=Medicago truncatula GN=MtrDRAFT_AC160012g32v2 PE=4
SV=1
Length = 275
Score = 53.9 bits (128), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 4 GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
GG+FRN+EG+W+ G N+ CNA+ +E GV+ GL +A G+ EL +D V+V
Sbjct: 150 GGLFRNAEGKWISGFSHNLSRCNAYLSELCGVFDGLQIARERGFSKVELHVDSSVVV 206