Jatropha Genome Database

JcCA0038081.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0038081.10 - phase: 1 /pseudo/partial
         (198 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9RMC2_RICCO (tr|B9RMC2) Putative uncharacterized protein OS=Ric...   219   1e-55
A5BHV4_VITVI (tr|A5BHV4) Putative uncharacterized protein OS=Vit...   155   2e-36
D7TB06_VITVI (tr|D7TB06) Whole genome shotgun sequence of line P...   128   3e-28
B8Y9B2_PONTR (tr|B8Y9B2) Squamosa promoter-binding protein OS=Po...    81   5e-14
A5BME3_VITVI (tr|A5BME3) Putative uncharacterized protein OS=Vit...    80   1e-13
B9IFE1_POPTR (tr|B9IFE1) Putative uncharacterized protein OS=Pop...    77   1e-12

>B9RMC2_RICCO (tr|B9RMC2) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1079430 PE=4 SV=1
          Length = 404

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 140/200 (70%), Gaps = 5/200 (2%)

Query: 1   LQFGGSQIFFNXSSELCMDWSCQTXEXSDALHXSILAKLQ--QRKNLFPGSLSQGYRSGK 58
           LQFGGSQIF   ++     W+      +D +  +  + L     KNLFPGS+S  YR GK
Sbjct: 208 LQFGGSQIFS--TTGASSGWAGAVKPENDPMLYTNQSSLNFSSGKNLFPGSMSHSYRGGK 265

Query: 59  QFPFLQCTSSSAVPRESVCQTIXXXXXXXXXXXXXQKMFSDGANRVIDSNRALSLLSSPS 118
           QFPF  CTSS+ +P ESVCQTI             QKMFSDG N+VIDSN ALSLLSSP 
Sbjct: 266 QFPFSHCTSST-LPGESVCQTILDVRSTLGSSSGNQKMFSDGVNQVIDSNGALSLLSSPQ 324

Query: 119 AQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMGSGPVESVLVSDGSSNANLHGQDMFQ 178
           A+TREIGLSHMVQPDLNPPA+SL PSLNF+ LGM  GPVESVLVSDGS N NLH QDMFQ
Sbjct: 325 AETREIGLSHMVQPDLNPPAQSLIPSLNFSNLGMEGGPVESVLVSDGSHNGNLHSQDMFQ 384

Query: 179 IVPDGSSANGSLQTLSFSWE 198
             PD SSA+GS Q LSFSWE
Sbjct: 385 TGPDESSASGSHQRLSFSWE 404


>A5BHV4_VITVI (tr|A5BHV4) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_001644 PE=4 SV=1
          Length = 389

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/164 (57%), Positives = 109/164 (66%), Gaps = 10/164 (6%)

Query: 42  RKNLFPGSLSQGYRSGKQFPFLQCTSSSAVPRESVCQTIXXXXXXXXXXXXXQKMFSDGA 101
           R+N FP S S+ YR GKQFPFLQ   +  +P  SVCQ +             QKMFSDG 
Sbjct: 229 RQNSFPESFSRSYR-GKQFPFLQ-GPNPTLPGTSVCQPLLDPSSASGNGSGGQKMFSDGL 286

Query: 102 NRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNAL-------GMGS 154
           NRVI S+RALSLLSSP  +T+EIGLS MVQ +  PPA+SL PSL++  L       GMG 
Sbjct: 287 NRVISSDRALSLLSSPPPETQEIGLSRMVQQNPIPPAQSLIPSLHYTGLSQYASSQGMG- 345

Query: 155 GPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           G V SVLVSDGSSNANLH   +FQ+ PDGSS N   QTLSFSWE
Sbjct: 346 GSVGSVLVSDGSSNANLHCPAIFQLGPDGSSTNSPHQTLSFSWE 389


>D7TB06_VITVI (tr|D7TB06) Whole genome shotgun sequence of line PN40024,
           scaffold_10.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00010522001 PE=4 SV=1
          Length = 421

 Score =  128 bits (322), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/164 (51%), Positives = 102/164 (62%), Gaps = 30/164 (18%)

Query: 42  RKNLFPGSLSQGYRSGKQFPFLQCTSSSAVPRESVCQTIXXXXXXXXXXXXXQKMFSDGA 101
           R+N FP S S+ YR GKQFPFLQ  + + +P  SVCQ +                     
Sbjct: 229 RQNSFPESFSRSYR-GKQFPFLQGPNPT-LPGTSVCQPL--------------------L 266

Query: 102 NRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNAL-------GMGS 154
           + +I S+RALSLLSSP  +T+EIGLS MVQ +  PPA+SL PSL++  L       GMG 
Sbjct: 267 DPMISSDRALSLLSSPPPETQEIGLSRMVQQNPIPPAQSLIPSLHYTGLSQYASSQGMG- 325

Query: 155 GPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           G V SVLVSDGSSNANLH   +FQ+ PDGSS N   QTLSFSWE
Sbjct: 326 GSVGSVLVSDGSSNANLHCPAIFQLGPDGSSTNSPHQTLSFSWE 369


>B8Y9B2_PONTR (tr|B8Y9B2) Squamosa promoter-binding protein OS=Poncirus
           trifoliata GN=SPL13 PE=2 SV=1
          Length = 379

 Score = 81.3 bits (199), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 86/164 (52%), Gaps = 10/164 (6%)

Query: 39  LQQRKNLFPGSLSQGYRSGKQFPFLQCTSSS----AVPRESVCQTIXXXXXXXXXXXXXQ 94
           L   +NLF  S S  Y++GKQF FLQ  +S+      P  SV Q +              
Sbjct: 222 LPDERNLFLRSPSSSYKTGKQFTFLQGDNSTFNSQTSPEASVSQPLLGTANLSDRSGASH 281

Query: 95  KMFSDGANRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMGS 154
            +F D +    DS+ ALSLLSSP+ Q+  I LS M+ P   P  R L  SL+ +++    
Sbjct: 282 NVFHDRST-TQDSDCALSLLSSPTTQSSGISLSQMMPPSSMPLVRPLGTSLHNHSV---- 336

Query: 155 GPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
            P+ESVLVS    + N+H   +F +  DGS+A+ + QT+ F WE
Sbjct: 337 EPMESVLVS-SDQDDNVHCPGVFHLGYDGSAASDTPQTIPFHWE 379


>A5BME3_VITVI (tr|A5BME3) Putative uncharacterized protein OS=Vitis vinifera
           GN=VITISV_022138 PE=4 SV=1
          Length = 377

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 20/165 (12%)

Query: 39  LQQRKNLFPGSLSQGYRSGKQFPFLQCT----SSSAVPRESVCQTIXXXXXXXXXXXXXQ 94
           L ++++L  GS S  Y+ GKQ  FLQ      S+       VCQ +              
Sbjct: 228 LLEKQHLHLGSSSSFYKGGKQLTFLQADHPSLSNYTTSEAPVCQPLAGHGC--------- 278

Query: 95  KMFSDG-ANRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMG 153
           KMF D   N+V++S+ ALSLLSSP  Q+  I LS+MVQP+    A+   PSL++N     
Sbjct: 279 KMFYDRLTNQVLESDCALSLLSSPQTQSSGISLSNMVQPNSVSLAQPSAPSLHYN----- 333

Query: 154 SGPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           + PV+SVLVS+     ++H   +F I  DGSS N + Q L F W+
Sbjct: 334 NQPVDSVLVSNAGV-TDIHCPGIFHIGSDGSSGNEAPQKLPFFWD 377


>B9IFE1_POPTR (tr|B9IFE1) Putative uncharacterized protein OS=Populus trichocarpa
           GN=POPTRDRAFT_733659 PE=4 SV=1
          Length = 381

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 87/168 (51%), Gaps = 13/168 (7%)

Query: 36  LAKLQQRKNLFPGSLSQGYRSGKQFPFLQCTS----SSAVPRESVCQT-IXXXXXXXXXX 90
           L +L  ++NLF GS S  Y   KQFPFL   S    +   P  SVCQ  +          
Sbjct: 222 LHQLPDKQNLFFGSSSSSYHGVKQFPFLHWHSPGLNNQTSPEASVCQPLLRTIALPGSSG 281

Query: 91  XXXQKMFSDGANRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNAL 150
                MF D   ++ DS+ ALSLLS  S QT   G + MVQ +  P +  + P+++ + L
Sbjct: 282 ASSHSMFCDRLTQIQDSDCALSLLS--STQTHASG-NLMVQHNSVPLSHPIGPTVHDHGL 338

Query: 151 GMGSGPVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
               GP++SVLV + + +AN+H    FQ    GSS N + QTL F+WE
Sbjct: 339 ----GPIDSVLVFN-NRDANVHFPGTFQPQSGGSSGNKAPQTLPFNWE 381