Jatropha Genome Database

JcCA0022221.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.10 - phase: 0 /partial
         (201 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S0K0_RICCO (tr|B9S0K0) Putative uncharacterized protein OS=Ric...   141   4e-32
B9STU6_RICCO (tr|B9STU6) Mom(Plant), putative OS=Ricinus communi...    60   1e-07
B9I6P2_POPTR (tr|B9I6P2) Chromatin remodeling complex subunit OS...    57   9e-07
D7SL09_VITVI (tr|D7SL09) Whole genome shotgun sequence of line P...    55   4e-06

>B9S0K0_RICCO (tr|B9S0K0) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_1355460 PE=4 SV=1
          Length = 347

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 12/179 (6%)

Query: 34  STQEVQVSRQSLSKGPIEFANACVQGLPLPRPRSTQRIGNETRVHGPRTRTSMND----- 88
           S QEVQ SRQ + + P+   N  ++ LPLP+ RS Q  G+++    P +R ++ D     
Sbjct: 138 SAQEVQFSRQPMPENPLGLTNPSIEDLPLPQSRSVQMGGHDSLSQEPSSRANVQDYRSMV 197

Query: 89  -------PSFHTNYVIPDIPKLAGSDPLPIEIERILRDERHELRMHEDMVLHIISEREKE 141
                   +   N+V+P+I  LA SDPL IE+ERI +D+  +  MHE ++LHI SER++E
Sbjct: 198 NDVGSVESTLLANHVMPEIHHLAWSDPLHIEMERIRKDDEQDCEMHEQIILHIKSERDRE 257

Query: 142 MREIFKKYEVLLQDAERAVHQKMEDHRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTR 200
           + E+ KKY++LL DAERA+  K +DH T  + VY SK LAE LMLK  +   A   D+R
Sbjct: 258 IEEVHKKYDMLLLDAERALLHKRKDHGTKFEKVYASKFLAEPLMLKQSNLNAAETADSR 316


>B9STU6_RICCO (tr|B9STU6) Mom(Plant), putative OS=Ricinus communis GN=RCOM_0543920
            PE=4 SV=1
          Length = 1982

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query: 107  DPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFKKYEVLLQDAERAVHQKMED 166
            DPL +E+ER+ ++    +  HE+  L + S+ E+E+ +I KKYEV LQ+ E     K ++
Sbjct: 1663 DPLQVELERLRKEADQIVNAHENTKLQLKSDCEQEVAQIRKKYEVKLQELESEFLMKKKE 1722

Query: 167  HRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTRQ 201
               N + V ++K+LAE    K  D K +  P   Q
Sbjct: 1723 MDMNEKKVLMNKILAEAFRSKCMDVKASSAPGIHQ 1757


>B9I6P2_POPTR (tr|B9I6P2) Chromatin remodeling complex subunit OS=Populus
            trichocarpa GN=CHR945-1 PE=4 SV=1
          Length = 2283

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 100  IPKLAGSDPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFK----KYEVLLQD 155
            +P     DPL  E++RI R+    +++HED  L + S+ EKE++E+      K+++ LQ+
Sbjct: 1968 MPVSMSQDPLQNELDRICRETEQIIKIHEDTKLQLKSDCEKEIQEVVAQIRTKHDIKLQE 2027

Query: 156  AERAVHQKMEDHRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTRQ 201
             E    +K ++   N   V+L+K+LAE    K  D K +  P  +Q
Sbjct: 2028 IESEFLRKKKEMADNQNKVFLNKILAEAFRSKCMDNKASSTPVRQQ 2073


>D7SL09_VITVI (tr|D7SL09) Whole genome shotgun sequence of line PN40024,
           scaffold_4.assembly12x (Fragment) OS=Vitis vinifera
           GN=VIT_00025215001 PE=4 SV=1
          Length = 805

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 106 SDPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFK----KYEVLLQDAERAVH 161
           SDPL  E+ERI ++    +++HED    + S+ EKE+ E+      KY+  LQD E    
Sbjct: 477 SDPLQNELERIRKEIDQTIKIHEDTKQQLKSDCEKEIEEVVAQLRGKYDAKLQDVEATFV 536

Query: 162 QKMEDHRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTRQ 201
            K  +   N + V ++K+LA+    K  D K +  P  +Q
Sbjct: 537 LKKMELDINQKKVTMNKILADAFRSKCMDVKASGAPGVQQ 576