Jatropha Genome Database

JcCA0020841.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020841.20 - phase: 0 /pseudo/partial
         (83 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C6TIB5_SOYBN (tr|C6TIB5) Putative uncharacterized protein OS=Gly...    60   1e-07

>C6TIB5_SOYBN (tr|C6TIB5) Putative uncharacterized protein OS=Glycine max PE=2
           SV=1
          Length = 183

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 44/67 (65%)

Query: 16  FSIMPFSPVITSPILAKNKIIRPKDFPKWTSSQAIHGPWLKVY*NSSGDVAATTGLVIVN 75
           F +M F P++T   LA+++++R +D      S A+HG   +++ + S +V +  GL++++
Sbjct: 73  FGVMTFGPIVTGAGLAEDEVVRAEDLAVGARSDAVHGSRFEIHKHGSRNVPSARGLIVID 132

Query: 76  INPLKLN 82
           I+PL+L+
Sbjct: 133 IDPLELD 139