Jatropha Genome Database

JcCA0004001.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0004001.10 + phase: 2 /TE/pseudo/partial
         (117 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9S5J7_RICCO (tr|B9S5J7) Putative uncharacterized protein OS=Ric...    71   5e-11
A2Q681_MEDTR (tr|A2Q681) Ribonuclease H OS=Medicago truncatula G...    63   1e-08
B9TAI7_RICCO (tr|B9TAI7) Putative uncharacterized protein (Fragm...    63   1e-08
Q2HRG4_MEDTR (tr|Q2HRG4) Ribonuclease H OS=Medicago truncatula G...    60   9e-08
B9HV70_POPTR (tr|B9HV70) Predicted protein OS=Populus trichocarp...    60   1e-07
B9HFN7_POPTR (tr|B9HFN7) Predicted protein OS=Populus trichocarp...    60   1e-07
Q9SJZ8_ARATH (tr|Q9SJZ8) Putative non-LTR retroelement reverse t...    59   2e-07
B9RKW4_RICCO (tr|B9RKW4) Nuclease, putative OS=Ricinus communis ...    58   3e-07
B9IKN0_POPTR (tr|B9IKN0) Predicted protein OS=Populus trichocarp...    56   1e-06
Q2HRR4_MEDTR (tr|Q2HRR4) Ribonuclease H OS=Medicago truncatula G...    54   4e-06
Q9FG26_ARATH (tr|Q9FG26) Non-LTR retroelement reverse transcript...    54   4e-06

>B9S5J7_RICCO (tr|B9S5J7) Putative uncharacterized protein OS=Ricinus communis
           GN=RCOM_0977440 PE=4 SV=1
          Length = 149

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 51/83 (61%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           KGN   A  GGV RD++G  V GFM  +GY + + AEL   FHGL+ AW+ G R++++ M
Sbjct: 38  KGNPGSAAGGGVFRDYRGRCVVGFMCNIGYCSAIGAELWAAFHGLTIAWNKGLRKLVLAM 97

Query: 64  DSKMALDLVMKRDCSNRRFVNVL 86
           DS +AL  + KR   N    N++
Sbjct: 98  DSTLALYWLSKRSICNSHLSNLV 120


>A2Q681_MEDTR (tr|A2Q681) Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC173289g22v1 PE=4 SV=1
          Length = 170

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%)

Query: 5   GNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMD 64
           GN   A  GG+IR+  GGW+ GF    G  + ++ EL  + +GL  AWD+G R + +E D
Sbjct: 22  GNPGRAGFGGLIRNDVGGWIHGFSESCGRVSNLLVELYAILNGLQLAWDLGFRIITLEPD 81

Query: 65  SKMALDLVMKRDCSNRRFVNVLSLIR 90
            K ALDL++  D +      VL  IR
Sbjct: 82  YKSALDLILDNDTTYHPHAIVLGRIR 107


>B9TAI7_RICCO (tr|B9TAI7) Putative uncharacterized protein (Fragment)
          OS=Ricinus communis GN=RCOM_2055410 PE=4 SV=1
          Length = 120

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)

Query: 10 ARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMAL 69
          A  GG+IRD  G W+ GFM  LG Y++M AELQ ++HGL  AW  G ++V++E    +++
Sbjct: 12 ASLGGLIRDHNGDWIRGFMANLGVYSVMFAELQGIYHGLCLAWSKGIKKVVLEA-YNLSI 70

Query: 70 DLVMKR 75
           +V+ R
Sbjct: 71 KMVLNR 76


>Q2HRG4_MEDTR (tr|Q2HRG4) Ribonuclease H OS=Medicago truncatula
            GN=MtrDRAFT_AC158502g18v2 PE=4 SV=1
          Length = 1378

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 6    NLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDS 65
            N   A  GG+ RD  G W+ GF   LG+ T M AEL  +  GL TAWD G R +LVE D 
Sbjct: 1194 NPRSAGYGGLFRDVDGNWLGGFYGSLGFTTKMKAELYAICQGLITAWDFGYRNILVETDY 1253

Query: 66   KMALDLV----MKRDCSNRRFVNVLSLIREFW 93
              A+  +    ++ D       ++ SL++  W
Sbjct: 1254 LEAIKHIEEANIEHDAYGSLVADIRSLMQRNW 1285


>B9HV70_POPTR (tr|B9HV70) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_881256 PE=4 SV=1
          Length = 245

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           KGN   A  GGVIRD  G W+ GF   +G  + + AEL  ++ GL  AWD G R+V +E 
Sbjct: 93  KGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLES 152

Query: 64  DSKMALDLVMKRDCSNRRFVNVLSLIR 90
           DSK+ + L+        R  N++  I+
Sbjct: 153 DSKVVVGLINGDSVRVDRNYNIIMQIK 179


>B9HFN7_POPTR (tr|B9HFN7) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_871904 PE=4 SV=1
          Length = 245

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 48/87 (55%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           KGN   A  GGVIRD  G W+ GF   +G  + + AEL  ++ GL  AWD G R+V +E 
Sbjct: 93  KGNPGVAGAGGVIRDHLGAWIGGFARNIGICSSVNAELWAVYVGLQLAWDRGFRKVDLES 152

Query: 64  DSKMALDLVMKRDCSNRRFVNVLSLIR 90
           DSK+ + L+        R  N++  I+
Sbjct: 153 DSKVVVGLINGDSVRVDRNYNIIMQIK 179


>Q9SJZ8_ARATH (tr|Q9SJZ8) Putative non-LTR retroelement reverse transcriptase
           OS=Arabidopsis thaliana GN=At2g22350 PE=2 SV=1
          Length = 321

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           +GN   A  GGV+RD  G W+ GF V +G  +  +AEL  +++GL  AW  G R V +E+
Sbjct: 170 RGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEV 229

Query: 64  DSKMALDLVMKRDCSNRRFVNVLSLIREF 92
           DSKM +  +      +     +L L  +F
Sbjct: 230 DSKMVVGFLTTGIADSHPLSFLLRLCYDF 258


>B9RKW4_RICCO (tr|B9RKW4) Nuclease, putative OS=Ricinus communis GN=RCOM_1563620
           PE=4 SV=1
          Length = 145

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 8   TPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKM 67
             AR GG+IRD  G WV GF++ +G    + AEL     G+S AW  G   ++VE+DS +
Sbjct: 17  AKARGGGIIRDSNGCWVGGFVIHIGACDPVGAELWAFLQGISLAWSKGIHNLIVEVDSSL 76

Query: 68  ALDLVMKRDCSNRRFVNVLS----LIREFW 93
             D + K+        N++S    L++ +W
Sbjct: 77  VADWMNKKSVCKSIHANLVSACLDLLQNWW 106


>B9IKN0_POPTR (tr|B9IKN0) Predicted protein OS=Populus trichocarpa
           GN=POPTRDRAFT_910909 PE=4 SV=1
          Length = 245

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           KGN   A  GGVIR+  G W+ GF   +   + + AEL  ++ GL  AWD G R+V +E 
Sbjct: 93  KGNPGVAGAGGVIREHLGAWIGGFARNIDICSSVNAELWAVYVGLQLAWDRGFRKVDLES 152

Query: 64  DSKMALDLVMKRDCSNRRFVNVLSLIRE 91
           DSK+ + L+        R  N++  I++
Sbjct: 153 DSKVVVGLINGDSVRVDRNYNIIMQIKD 180


>Q2HRR4_MEDTR (tr|Q2HRR4) Ribonuclease H OS=Medicago truncatula
           GN=MtrDRAFT_AC157894g31v2 PE=4 SV=1
          Length = 302

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
           KGN   A CGG++R   G W+ GF  ++G    + AE+  L+ GL  AW  G   ++VE 
Sbjct: 219 KGNGELAGCGGLLRQSDGTWIKGFSRKIGACDALHAEMWGLYLGLDMAWREGISHLIVES 278

Query: 64  DSKMALDLVMK 74
           DSK+ +D+V  
Sbjct: 279 DSKVLIDMVTP 289


>Q9FG26_ARATH (tr|Q9FG26) Non-LTR retroelement reverse transcriptase-like
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 676

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%)

Query: 4   KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
            GN   A  GGVIRD  G W+ GF + +G  +  +AEL  +++GL  AW+ G R V +E+
Sbjct: 525 HGNPGQATAGGVIRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEV 584

Query: 64  DSKMAL 69
           DS + +
Sbjct: 585 DSALVV 590