Jatropha Genome Database

JcCA0000051.10
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000051.10 - phase: 0 /pseudo
         (114 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q3BAR3_PHAAO (tr|Q3BAR3) Putative uncharacterized protein OS=Pha...   170   5e-41

>Q3BAR3_PHAAO (tr|Q3BAR3) Putative uncharacterized protein OS=Phalaenopsis
           aphrodite subsp. formosana PE=4 SV=1
          Length = 114

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 98/114 (85%)

Query: 1   MSITFMHNFHTKVSTVNNISPGINYTTLTINYGLVEIETI*VESHSANT*SSEPNTYYRP 60
           M ITFMH FHTK+ST+ +ISP +N TTLTINYGLV+I+T+ VE HS NT SSEP+T+YRP
Sbjct: 1   MCITFMHYFHTKISTIYDISPSVNNTTLTINYGLVKIKTVQVERHSTNTQSSEPDTHYRP 60

Query: 61  SS*EEM*RTRIVETSILEDQSAKITMSGYDIISFFLLTESVTFISRFIFCGFPD 114
           SS EEM  T IVETSILEDQSAKITMSGY+II FFLLT+SVTFISR IF GFPD
Sbjct: 61  SSQEEMQGTGIVETSILEDQSAKITMSGYNIIGFFLLTKSVTFISRLIFSGFPD 114