Jatropha Genome Database

JcCA0000015.20
Show Alignment:  
BLASTP 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0000015.20 + phase: 1 /partial
         (102 letters)

Database: trembl 
           11,636,205 sequences; 3,746,823,912 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B6SQP7_MAIZE (tr|B6SQP7) Putative uncharacterized protein OS=Zea...   135   1e-30
C6JSJ8_SORBI (tr|C6JSJ8) Putative uncharacterized protein Sb1138...   135   2e-30
C6JSN6_SORBI (tr|C6JSN6) Putative uncharacterized protein Sb1610...    80   8e-14
C5Y2D3_SORBI (tr|C5Y2D3) Putative uncharacterized protein Sb05g0...    71   4e-11
A6N073_ORYSI (tr|A6N073) Putative uncharacterized protein (Fragm...    56   1e-06

>B6SQP7_MAIZE (tr|B6SQP7) Putative uncharacterized protein OS=Zea mays PE=4 SV=1
          Length = 98

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 72/80 (90%)

Query: 23  QGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCSRGESGSPRAGRGTDWERPFRG 82
           QGKSAK IRN GKRIGSEGWARGS+ RTRRL A+CSSCSRGESG PRAGRGTD ERP RG
Sbjct: 6   QGKSAKRIRNFGKRIGSEGWARGSRPRTRRLLAECSSCSRGESGPPRAGRGTDRERPPRG 65

Query: 83  PSPGVEQSTQNWYGQGESDC 102
           PSPGVEQ TQNWYGQGESDC
Sbjct: 66  PSPGVEQPTQNWYGQGESDC 85


>C6JSJ8_SORBI (tr|C6JSJ8) Putative uncharacterized protein Sb1138s002030
           OS=Sorghum bicolor GN=Sb1138s002030 PE=4 SV=1
          Length = 98

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 71/80 (88%)

Query: 23  QGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCSRGESGSPRAGRGTDWERPFRG 82
           QGKSAK IRN GKRIGSEGWARGS+ RTRRL ADCSSCSRGESG PRAGRGTD ER  RG
Sbjct: 6   QGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPRAGRGTDRERFLRG 65

Query: 83  PSPGVEQSTQNWYGQGESDC 102
           PSPGVEQ TQNWYGQGESDC
Sbjct: 66  PSPGVEQPTQNWYGQGESDC 85


>C6JSN6_SORBI (tr|C6JSN6) Putative uncharacterized protein Sb1610s002010
          OS=Sorghum bicolor GN=Sb1610s002010 PE=4 SV=1
          Length = 86

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/47 (87%), Positives = 42/47 (89%)

Query: 23 QGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCSRGESGSPR 69
          QGKSAK IRN GKRIGSEGWARGS+ RTRRL ADCSSCSRGESG PR
Sbjct: 6  QGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPADCSSCSRGESGPPR 52


>C5Y2D3_SORBI (tr|C5Y2D3) Putative uncharacterized protein Sb05g016472
          (Fragment) OS=Sorghum bicolor GN=Sb05g016472 PE=4 SV=1
          Length = 45

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/42 (85%), Positives = 37/42 (88%)

Query: 23 QGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSADCSSCSRGE 64
          QGKSA WIRN  KRIGS+GWARGSQ RTRRL ADCSSCSRGE
Sbjct: 4  QGKSAIWIRNFEKRIGSDGWARGSQPRTRRLPADCSSCSRGE 45


>A6N073_ORYSI (tr|A6N073) Putative uncharacterized protein (Fragment) OS=Oryza
          sativa subsp. indica PE=2 SV=1
          Length = 39

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 23 QGKSAKWIRNLGKRIGSEGWARGSQSRTRRLSAD 56
          QGKSAK IRN GKRIGSEGWARGS+ RTRRL AD
Sbjct: 6  QGKSAKRIRNFGKRIGSEGWARGSRPRTRRLPAD 39