Jatropha Genome Database

JcSR479173f.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR479173f.10 + phase: 0 /partial
         (64 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028079001 assembled CDS                                       111   7e-26
GSVIVT01035047001 assembled CDS                                       103   1e-23
GSVIVT01031205001 assembled CDS                                       102   5e-23
GSVIVT01031260001 assembled CDS                                       100   1e-22

>GSVIVT01028079001 assembled CDS
          Length = 529

 Score =  111 bits (277), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 57/62 (91%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LESLP MVAGVWSE+ N QLEATT+FRKLLSIERSPPINEV+Q+GVVPR +EFL R+DFP
Sbjct: 71  LESLPAMVAGVWSEDSNLQLEATTYFRKLLSIERSPPINEVIQSGVVPRLVEFLGRDDFP 130

Query: 61  QL 62
           QL
Sbjct: 131 QL 132


>GSVIVT01035047001 assembled CDS
          Length = 529

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 54/62 (87%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LESLP MVAGVWS+  + QLEATT FRKLLSIERSPPI EV+Q+GVVPRF+EFL R DFP
Sbjct: 71  LESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFP 130

Query: 61  QL 62
           QL
Sbjct: 131 QL 132


>GSVIVT01031205001 assembled CDS
          Length = 527

 Score =  102 bits (253), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LE LP MVAGVW+++ N QLEATT FRKLLSIER PPI EV+Q+GVVPRF+EFL R DFP
Sbjct: 71  LEFLPSMVAGVWTDDSNIQLEATTQFRKLLSIERCPPIEEVIQSGVVPRFVEFLVREDFP 130

Query: 61  QL 62
           QL
Sbjct: 131 QL 132


>GSVIVT01031260001 assembled CDS
          Length = 535

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 55/62 (88%)

Query: 1   LESLPVMVAGVWSEEQNSQLEATTHFRKLLSIERSPPINEVVQAGVVPRFIEFLARNDFP 60
           LES+ +MV GVWS++  SQLEATT FRKLLSIERSPPI+EV++AGVVPRF+EFL R+D P
Sbjct: 75  LESITLMVQGVWSDDPASQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLP 134

Query: 61  QL 62
           QL
Sbjct: 135 QL 136