Jatropha Genome Database

JcSR397681f.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR397681f.10 - phase: 1 /partial
         (122 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002259001 assembled CDS                                       218   5e-58
GSVIVT01006617001 assembled CDS                                        49   6e-07

>GSVIVT01002259001 assembled CDS
          Length = 687

 Score =  218 bits (555), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 103/114 (90%), Positives = 109/114 (95%), Gaps = 1/114 (0%)

Query: 1   EGEDHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKSLGSFGAWNRCLNHLLTLAESHVE 60
           EGE+HLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSK+LGSFGAWNRCLNHLLTLAESH+E
Sbjct: 524 EGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNHLLTLAESHIE 583

Query: 61  SVILAKFIEAVQNCPDASSRAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAK 114
           SVILAKFIEAVQ+CP+  +R  LKLVCDLYALDRIWNDIGTYR VDYVAPNKAK
Sbjct: 584 SVILAKFIEAVQSCPE-ETRVTLKLVCDLYALDRIWNDIGTYRIVDYVAPNKAK 636


>GSVIVT01006617001 assembled CDS
          Length = 773

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 5/114 (4%)

Query: 3   EDHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKSLGSFGAWNRCLNHLLTLAESHVESV 62
           ED L +P   L+AF  R++R+  + A  L K + S   F   +     L+  A +H + +
Sbjct: 584 EDWL-NPSVILEAFEARSARMSVACAQNLSKFANSEEGFAELS---ADLVEAAVAHCQLI 639

Query: 63  ILAKFIEAVQ-NCPDASSRAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAKV 115
           +++KFIE +Q + P    +  L+++C++YAL  +   +G + +   + P +A +
Sbjct: 640 VVSKFIEKLQEDIPGKGVKRQLEILCNIYALYLLHKYVGDFLSTSCITPKQASL 693