Jatropha Genome Database

JcPR14IO7F0.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR14IO7F0.10 + phase: 2 /pseudo/partial/short
         (39 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014465001 assembled CDS                                        52   5e-08

>GSVIVT01014465001 assembled CDS
          Length = 808

 Score = 52.0 bits (123), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/31 (74%), Positives = 26/31 (83%)

Query: 1   YYMNQSLKTAFEMAPADPTVDLNMQL*VILH 31
           YY++QSLK AFE APADPTVDLNMQL  + H
Sbjct: 336 YYLSQSLKAAFETAPADPTVDLNMQLTKLAH 366