Jatropha Genome Database

JcPR13H21R2.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR13H21R2.10 + phase: 2 /pseudo/partial
         (108 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018382001 assembled CDS                                       104   1e-23
GSVIVT01013241001 assembled CDS                                        96   4e-21

>GSVIVT01018382001 assembled CDS
          Length = 403

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 49  QTQGRESIAAKLVANLITEAGVNRVLACDLHSGQSMGYFDIPVDHVYGQ 97
           +TQGRESIAAKLVANLITEAG NRVLACDLHSGQSMGYFDIPVDHVYGQ
Sbjct: 183 KTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQ 231


>GSVIVT01013241001 assembled CDS
          Length = 397

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 42/49 (85%), Positives = 47/49 (95%)

Query: 49  QTQGRESIAAKLVANLITEAGVNRVLACDLHSGQSMGYFDIPVDHVYGQ 97
           +TQGRESIAAKLVAN+IT+AG +RVLACDLHSGQSMGYFDIPVDH+Y Q
Sbjct: 183 KTQGRESIAAKLVANVITKAGADRVLACDLHSGQSMGYFDIPVDHIYCQ 231