Jatropha Genome Database

JcPR11GR8GC.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR11GR8GC.10 - phase: 2 /pseudo/partial
         (171 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000461001 assembled CDS                                        55   1e-08
GSVIVT01000469001 assembled CDS                                        47   4e-06
GSVIVT01000468001 assembled CDS                                        46   8e-06

>GSVIVT01000461001 assembled CDS
          Length = 491

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 8/133 (6%)

Query: 6   GKSISMFLTLRAYLCKQSEIEKNPTLSPELTPFFDRTLIQDPSGLDMIFLNNWLESRLLC 65
           G + S F+ L A + K  E  +   L   + PF+DRT+++DP G++ IF N   + +   
Sbjct: 197 GNTFSQFVRLWASINKLGE--ETAMLQDRILPFYDRTVVKDPLGIESIFWNQVGKIKFEG 254

Query: 66  VNDKPRSLKLWQVPRDLSS-LVRSTFELCHEDIKKLRRKVLSQLEDQNKIKSMNLSTFVL 124
              +P +         LS+  VR+ F L   ++++L++ V+ Q+  Q+ +     S F +
Sbjct: 255 YRPRPPTNNFEGCQSQLSTNNVRAKFLLRRAEVQRLKKWVIPQIPKQSHV-----SAFTV 309

Query: 125 *FAYTLVCIVKAR 137
             AY   C++KAR
Sbjct: 310 ICAYVWSCMIKAR 322


>GSVIVT01000469001 assembled CDS
          Length = 393

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 17/115 (14%)

Query: 25  IEKNP-TLSPELTPFFDRTLIQDPSGLDMIFLNNWLESRLLCVNDKPRSLKLWQVPRDLS 83
           +++ P  L  E+ PF+DRT+++DP+ +  IF  +  +S+                P   +
Sbjct: 152 VQREPLMLEGEILPFYDRTMVKDPNKIGSIFWQHHQKSKFEGYR-----------PLLPT 200

Query: 84  SLVRSTFELCHEDIKKLRRKVLSQLEDQNKIKSMNLSTFVL*FAYTLVCIVKARM 138
           S + ++F L   D+++L+++V+ Q         +++S+F +  AYT  CIVKA++
Sbjct: 201 SNILASFLLSQADLQRLKKRVMVQCP-----TLLHVSSFTVTCAYTWTCIVKAQV 250


>GSVIVT01000468001 assembled CDS
          Length = 499

 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 18/102 (17%)

Query: 37  PFFDRTLIQDPSGLDMIFLNNWLESRLLCVNDKPRSLKLWQVPRDLSS-LVRSTFELCHE 95
           PF+DRT+++DP GL   F N +              +K  +    LS+  VR+TF L   
Sbjct: 182 PFYDRTVVKDPIGLRSTFWNYF------------GKVKFEECQSQLSTNSVRATFLLRRA 229

Query: 96  DIKKLRRKVLSQLEDQNKIKSMNLSTFVL*FAYTLVCIVKAR 137
           ++++L++ V+ Q+  Q+ +     S F +  AY   C++KAR
Sbjct: 230 EVQRLKKWVIPQIPKQSHV-----SAFTVVCAYVWSCMIKAR 266