Jatropha Genome Database

JcPR04JCLS5.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR04JCLS5.10 + phase: 1 /pseudo/partial
         (124 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009871001 assembled CDS                                       170   1e-43
GSVIVT01018797001 assembled CDS                                        48   1e-06

>GSVIVT01009871001 assembled CDS
          Length = 993

 Score =  170 bits (431), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 95/117 (81%), Gaps = 1/117 (0%)

Query: 1   EINSPDCIDKVALPENKVLQRDCSGERYQNGCAHISSPTSNPEVPDDGNLVSGYGSNTTL 60
           EINS DCIDKVALPENKV+Q+D SGERY NGCAHIS  TS+PEVP DGNLV G+ SN   
Sbjct: 667 EINSSDCIDKVALPENKVVQKDTSGERYPNGCAHISDSTSDPEVPHDGNLVPGFKSNAAS 726

Query: 61  CKVSLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLKLQLTSATEV 117
           C  SLEEFE+LK+EKD + M LARCTENLE TKSQL ETEQLLA + K QLTSA ++
Sbjct: 727 CNCSLEEFEQLKSEKDTLEMHLARCTENLESTKSQLQETEQLLAEA-KSQLTSAQKL 782


>GSVIVT01018797001 assembled CDS
          Length = 994

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 47/112 (41%), Gaps = 49/112 (43%)

Query: 1   EINSPDCIDKVALPENKVLQRDCSGERYQNGCAHISSPTSNPEVPDDGNLVSGYGSNTTL 60
           E  + DCIDKVAL ENKV                                          
Sbjct: 685 ETTTFDCIDKVALLENKV------------------------------------------ 702

Query: 61  CKVSLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLKLQLT 112
                 + E L++ KDNM MDLARCT++LE T+ QL E EQLL   LK QL 
Sbjct: 703 ------DLELLQSCKDNMEMDLARCTQDLESTRLQLKEMEQLLTE-LKSQLA 747